Trachemys scripta elegans (red-eared slider): 117882218
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Entry
117882218 CDS
T07347
Symbol
CAPRIN2
Name
(RefSeq) caprin-2 isoform X1
KO
K18744
caprin-2
Organism
tst
Trachemys scripta elegans (red-eared slider)
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tst03019
]
117882218 (CAPRIN2)
Messenger RNA biogenesis [BR:
tst03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Other mRNA localization factors
117882218 (CAPRIN2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Caprin-1_C
Caprin-1_dimer
C1q
Motif
Other DBs
NCBI-GeneID:
117882218
NCBI-ProteinID:
XP_034636185
LinkDB
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Position
1:105641909..105704061
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AA seq
1276 aa
AA seq
DB search
MGPSVSMVQLSQSPFRCPSPSGHSEGGEDKSMKPAKQQATPGQPGENQPPLSPLQSSLNP
AATPSQAYETYIDNGLICLKHKIRNIEKKKLKLEDYRDRLKKGEALNQDQLEAVEKYDEV
LHNLEFAKELQKTFSGLSQDLLRAQRKAQRRDTIMKLEAEKKKLRTILQVQYVLQNFTQE
HVQKDFKGGLNGAIYLPSKELDYLIRFAKLTCPERSENLSVEDQMEQSSLYFWDLLEGSE
KAVVGTTYKHMKELLSKLLNSGYFENIPVPRNMQIKEELEEEVIRKSQRTRQLPKGESVK
EPEPLMKLLQSEIQPQEFLNRRYLPEAEGSIKKPEECKPWEAEYTRKQEPPKSWEMLVDL
EEQEQKKQKQESLKPWESCGRHQEQKKQESPKLWEACVREEEGQKQESSKPWETSVRGEE
PKKQETPKPWVTNVREEQDSPKPWITKVKEEQEQRKQESPRLWATKVREEQEQRKQESPR
PWATKVQEEPDQKQESPRPWITQTREEPEQKKQEPVKPWGTRGREEPEQKKQEPVKPWGT
RGREEPEQKKQEPVKPWGMRVREEPEQKKQEPVKSWETRVREESEQKKQDPPKAWETSDR
QQPVSSQQLQNTPKSWGAASLVPKEQIGPKKFDVEPKDRRDRRQKHESEVKRDGKTDGLS
GGHGFDAVRKKEVLQSVGESFKLPRSLQSNVQVPKPGHQSAAEFCCTSTLPKDPILRREK
LQDLMTQIQGTYNFMQESILDVDKASPSAICSSQPPSVTPAGSPVASKEQKLPSQNDFLQ
QPPQAAASPITLHGSNTSLASADHTLSGSETDDLMTPQTPQTSELLSQETENYTSSQPPY
QTSPCISEPVISKKIEIAQATIPLPRDPQSPLPTSSTSMSSVSQGQTFQSPPASSSSVTI
NAAPFQAMQTVFKVNAPLPPRKEQEIKDDSSYSAGYNQSFSTASTQTPPQCQLQSTHVAE
QNSLSQETLPTVNYQPDGAVPVSNGSLAFYPAQTVFTRPTQPYLNNRGSVRGSARGGRSL
TNSYRSPGGYKGFDAYRGSPSIPNGNYGQLQFAGRDYPGIPYSQRDVNYQQCYKRGGVTG
GPRSNSRAGWSDSSQVSSPERDNETFNSGDSGQGDSRSITPVDMPVTSQAATILPVHVYP
LPQQMRVAFSAARTSNLAPGTLDQPIAFDLLLNNLGETFDIQLGRFNCPVNGTYVFIFHM
LKLAVNVPLYVNLMKNEEVLVSAYANDGAPDHETASNHAVLQLFQGDQIWLRLHRGAIYG
SSWKYSTFSGYLLYQD
NT seq
3831 nt
NT seq
+upstream
nt +downstream
nt
atgggcccatctgtttcaatggtgcagctttcccaatcccctttccgttgcccgtcgcct
tcaggccactcggaagggggggaggacaaaagcatgaagccggccaagcagcaggcaacc
cctggccaacctggggagaaccagcctcccctgagccccctgcagtcttctctgaaccct
gctgccactccttcccaggcatatgagacttacattgataatggacttatctgtctcaaa
cacaagatcaggaatattgagaaaaagaagctcaaacttgaagactacagggatcgcctg
aagaagggagaagccctcaatcaggaccagttggaggcagtggagaaatacgatgaagtg
ctacacaacttggagtttgccaaggagcttcaaaagactttttctggacttagccaagat
ctgctgagagcacagaggaaggctcagagacgggatactataatgaagcttgaagcagag
aagaaaaagctgcgtacaatactgcaagtccagtatgtgctgcagaacttcactcaagag
catgttcagaaagacttcaaaggtggcttgaacggtgcaatatatttgccttctaaggaa
ctagactacctcattagatttgcaaaactgacatgcccagaaagaagtgagaacctgagt
gttgaagaccagatggagcaatcatcactctacttttgggatcttctagaaggcagtgag
aaagctgtggttggaacaacatataaacatatgaaggaactgttatccaaactcttaaac
tctggatattttgaaaatattcctgtgcctcgcaacatgcaaataaaagaggaattggaa
gaggaagtaataagaaaatctcagagaacaagacagttgccaaaaggagagtctgtcaaa
gagccagaaccccttatgaagcttttgcagtctgagatacagccacaagagtttctcaac
aggcgctatttgcctgaagcagaaggctctatcaagaagcctgaagaatgcaaaccttgg
gaagcagaatacaccagaaagcaagaacctccaaaatcctgggaaatgcttgttgatcta
gaagaacaagaacagaagaagcagaagcaggaatctctaaagccttgggaatcttgtggt
aggcatcaggaacagaagaagcaggaatctccaaagctctgggaagcttgtgttcgggaa
gaggagggacagaagcaggagtcttccaagccctgggaaactagtgttaggggggaagaa
ccgaaaaagcaggagactccaaagccttgggtaacaaatgttagggaggaacaggattcc
ccaaaaccttggataacaaaagttaaggaagagcaagaacagaggaagcaggaatctccc
agactttgggccacaaaagttcgggaagagcaggaacaaaggaagcaggaatctccaaga
ccttgggcaacaaaagttcaggaagagccagaccaaaagcaagaatctccaagaccttgg
ataacccaaactagggaggaaccagaacaaaagaagcaggaacctgtgaagccttgggga
acacgtggtagggaggaaccagaacaaaagaagcaggaacctgtgaagccttggggaaca
cgtggtagggaggaaccagaacaaaagaagcaggaacctgtgaagccttggggaatgcgt
gttagggaggaaccagaacaaaagaagcaggaacctgtgaagtcctgggaaacacgtgtt
agggaggaatcagaacaaaagaagcaggaccctccaaaagcttgggaaacatctgaccgg
cagcagccagtatcatcgcagcagttacagaatactccaaagtcctggggagctgcaagc
cttgtgccaaaggagcagattgggccaaagaagtttgatgtggaacccaaagatagacgg
gatcgcagacagaagcatgaatctgaagtgaaacgagatggaaaaacagatggattaagt
ggtggacatggctttgatgcagtaagaaaaaaggaggtactccaatcagtcggggagagt
tttaagctacctaggagtctccaaagcaatgtacaggtgcctaaacctggacatcagtca
gctgcagaattttgctgtacttctactcttccaaaggatcctatactaagaagggaaaaa
ctgcaggatttgatgactcagatacaagggacttacaacttcatgcaggagtctatcctg
gatgttgataaagcttcaccaagtgctatttgttcatcacaaccaccgtcagtaactccg
gcaggtagtcctgtagcttctaaagaacagaaactgccaagtcaaaatgactttcttcaa
cagccaccacaggctgctgcttctcccattaccctgcatggctcaaatacttccttagca
tctgctgatcacactctttctggttccgaaactgatgatcttatgacaccacagacacca
cagacatcagaactactttctcaagagactgagaattatacttcatctcagccaccttat
cagacaagcccatgcatctctgagccagtaatatccaaaaagattgaaattgcccaggca
actattcccctgccaagagacccgcagtcaccactgcctacttcaagtacctccatgtca
tcagtgtcacaggggcaaacctttcaatctcctccagcaagcagcagttctgttaccata
aatgcagctccctttcaggctatgcagactgtatttaaggtgaatgcacccctgcctcca
cgtaaagagcaggaaataaaagatgactcctcatactctgcgggatataaccagagtttt
tctacagcaagtacacaaactcctcctcagtgccagttacagtccactcatgttgcagag
caaaactctctttcacaagaaactttgccaacagttaattaccaacccgacggagctgtt
cctgtaagcaatggtagccttgccttttatccagcacagactgttttcaccagacccact
cagccttatctcaataatcgtggatctgttaggggatctgccagaggtgggagatcactg
accaattcatatcgttcccctggtggatacaaaggttttgatgcttatagaggatccccg
tcaatacctaatggcaactacggccagctgcagtttgctggtagagattatcctggaatt
ccatattctcaaagggatgttaattaccagcagtgctataaacgaggaggagtaactggc
ggtcctcgatcaaactcaagagcaggatggagtgattcttctcaggtgagcagtccagaa
agagacaatgaaacctttaatagtggggactctgggcagggagactcccgcagcatcacc
cctgttgacatgccagtgacaagccaagctgctaccatactaccagtgcacgtttatccc
cttccgcagcagatgagagttgctttttctgctgcaagaacatctaacttggcccctgga
actctagatcagcccattgcatttgaccttctgctgaataaccttggagaaacttttgat
attcagcttggtaggtttaattgtccagtgaatggcacctatgtcttcatcttccacatg
ctgaaactggctgtgaatgttccattgtatgtaaaccttatgaagaatgaagaagtccta
gtgtctgcatatgccaatgatggggctccagaccatgaaacagctagcaatcatgctgtc
ctacagctttttcaaggggaccagatctggttacgtctgcatcggggcgctatctatgga
agtagctggaaatattctaccttttcagggtatctcctgtatcaagactga
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