Trachemys scripta elegans (red-eared slider): 117882409
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Entry
117882409 CDS
T07347
Name
(RefSeq) collagen alpha-3(IV) chain-like isoform X1
KO
K06237
collagen type IV alpha
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst04510
Focal adhesion
tst04512
ECM-receptor interaction
tst04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117882409
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
117882409
09142 Cell motility
04820 Cytoskeleton in muscle cells
117882409
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
tst04147
]
117882409
00536 Glycosaminoglycan binding proteins [BR:
tst00536
]
117882409
Exosome [BR:
tst04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
117882409
Glycosaminoglycan binding proteins [BR:
tst00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117882409
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
117882409
NCBI-ProteinID:
XP_034636458
LinkDB
All DBs
Position
9:69713066..69847216
Genome browser
AA seq
1669 aa
AA seq
DB search
MRRHPGLDPSKPPAAAAPRPGFYGTHQSCVCKGKSHCYCDGMKGNKGEKGFSGAQGVPGQ
TGFCGPEGPPGPQGPTGFPGQIGLVGPKGERGMLGLPGFSGLPGLPGEPGNIGPPGGPGI
PGCNGPKGEQGFPGPPGPGGAPGKPGIDGLKGDKGCPASGYDPGYDGRGDPGLPGIRGRQ
GEPGPRGLQGLVGPQGPLGSSGVSGRMGLPGRKGVMGIKIIGTKGIQGDPGSAGPPGLPG
TVIVTLSGPDNMKGLKGDKGEKGSRGLPGPVGSLGFPGDFQSEKGDPGEPGPQGKPGKDG
TPGPHGFLGEKGERGYPGSPGVAGTKGRKGDIGPPGFPGPTKYYDEVAGEKGDEGYPGPP
GLKGQPGIPGPRGPLGVTGRPGVSRPGINGPQGYPGLKGNKGEKGQPGMNAVGSPGLHGF
PGRPGSVGSPGPAGQPGKVTFETHPPGVPGNPGCVGPPGLPGDSGVKGEEASPCNQCSYI
PGGPGLPGAPGQDGQEGVTGRQGISGPKGSRGSPGAQGPSGPQGLPGFPGDQGLKGPNGE
PGYVYPEGQKGNRGDPGIRGNPGRKGSDGLHKKHGSKGSKGPKGERGLDGSKGDRGLSGL
PGNPGLPGEMGLTGPPGYGPQGMTGPKGAKGMSGLPGLPGAIGPKGELGTVNPIPGPPGP
RGPEGLPGPPGAMGNVGSRGQHGDLGLPGSDGAPGFSGTGFPGDPGPKGDKGLRGSKGLP
GLPGKAGEPGSPGQPGYPGEKGDPGLIIPGQQGGLGSPGQGGFPGVKGDRGIPGLPGFPG
HNGADGPRGEPGCPGAPGEKGLPGKLGDCLIGPPGLPGAHGLTGQQGERGVLGSKGDPSI
PGLGVPGFPGQFGLPGLPGHQGDTGSPGLKGQPGRPGIPGAPGQRGERGIMGNLGIPGPP
GVFGHPGIPGNRGSPGLPGLKGRKGFLGAKGEPGDKGFPGPSETRGNPGDKGEPGSKGFP
GRIGLKGERGDKGIQGSAGLDGTSGVSGLPGPKGFVGLQGIPGRQGLPGPPGDRGDMGVP
GSKGERGSQGLPGPSGAQGPPGLLGFPGDKGEPASSASGPPGKPGPKGDPGPPGEMGRKG
ERGSPGQPGLVGEPGLPGNRGDCGKPGAPGPSKCAGDTGAKGCKGVAGPRGTEGPPGAIG
APGANGAVGERGNQGRDGIPGSPGEKGERGAPGWQIKGPQGISGPKGIKGDVGIPGCPGP
EGIKGLMGDPGPIGPPGLNGKPGFPGAPGIMIPGQKGNRGLAGVDGRLGIPGRPGSSGTP
VYSIKGNKGVRGIDGIPGPPGLVGNIGPPGLTGVEGTPGNSGPRGEPGFPGLPGVTGEKG
NRGPPGPMGAAGSIGPKGPPGQPGAPRKATYIPGNQGPAGSPGSPGLPGDPGPRGPPGLH
GRQGVKGLPGHCGNPGIVGPVGPKGDKGFQGQRGSPGLIGFPGVRGLPGSPGISIPGPTR
RGFIFTRHSQSTKIPSCPSGTAQIYSGYSLLFVQGNEQAHGQDLGTVGSCLQRFTTMPFL
FCNTNDVCSFASRNDYSYWLSTAAPMPEDMAPISGRALQPYISRCIVCEGPAVVIAVHSQ
TTAIPLCPQGWISLWKGFSFVMYTSAGSEASGQALASPGSCLEEFRAIPFIECHGRGTCN
YYTNSYSFWLASLDPRRMFRKPLPQILKAGELENVISRCQVCMKRDRNS
NT seq
5010 nt
NT seq
+upstream
nt +downstream
nt
atgagaagacacccagggctggatcccagcaaacccccagcagcggcggcgccacgccct
gggttctacggtacccaccagagttgtgtctgcaaaggtaaaagccactgctactgtgat
ggaatgaaaggtaataagggtgaaaaaggattttctggtgctcaaggtgtacctggccag
acaggtttctgtggccctgagggacctccagggccacagggacccacgggttttccaggg
cagataggtttagtcggacccaaaggtgaaaggggaatgctaggattacctggtttttca
ggtctcccaggtcttccaggtgaaccaggaaacattggtcctcctggaggtccaggaatt
ccaggatgcaatggcccaaagggtgaacaaggatttccagggcctccagggccaggaggt
gctccaggcaaaccaggtattgatggcctcaaaggagataaggggtgccctgcaagtgga
tatgacccgggatatgatggaagaggtgaccctggattaccaggaatacgtggacgccag
ggtgaaccaggtcctcgaggactccaagggctagttggaccacaaggccctctgggatct
tcaggtgtttcagggagaatgggacttccaggacgtaagggtgtcatggggattaagatc
ataggaaccaaaggaatacagggtgatcctggatcagcaggaccccctgggctcccagga
acagttattgtgacattaagcggaccagataatatgaagggcttgaaaggagataaagga
gagaaaggatcaaggggtctcccaggaccagttgggtcattgggttttcctggagatttt
caaagtgaaaaaggtgacccaggagagcctggcccgcagggtaaacctggaaaagatggt
acccccggtccacatggctttctgggagagaagggtgaacgcggctacccaggatcacct
ggcgtagcaggcactaaggggaggaaaggagacattggcccaccaggatttcctggtccc
acaaagtattatgatgaggtggctggtgaaaaaggagatgaaggatatccaggaccccca
ggacttaaaggtcaacctggcatacctgggccaagaggtcccctaggtgtgacaggaaga
ccaggtgtatcgagacctggcataaatggtccacaaggatatccaggactgaaaggaaat
aagggagagaaaggacagcctggcatgaatgctgtgggatctccaggacttcatgggttt
ccaggcagacctggttctgtaggatcaccaggtcctgcaggacagccaggtaaagtaacg
tttgaaacgcacccaccaggagttccaggaaaccccggatgtgtgggacctccaggactt
ccaggagacagtggagtgaaaggtgaagaagcaagtccttgtaatcaatgcagttatata
ccaggaggacctggacttcctggtgctcctgggcaagatggtcaagaaggagttactggt
agacaaggaataagtggtcccaaaggatctcgaggttctccaggggcacaagggccttca
ggtcctcaaggacttccaggttttccaggagatcaaggactgaaagggccaaacggtgaa
ccaggatatgtgtatccagaagggcaaaaaggaaacagaggagatccagggatcagagga
aatccagggaggaaaggttcagatggattgcacaaaaaacatggttcaaaaggctcaaaa
ggtcctaaaggcgaaaggggactggatggttcgaaaggggacagagggttatcaggattg
cctggtaacccaggtcttcctggagaaatggggctcactggaccaccaggatatggacca
caaggaatgacaggtcccaaaggcgctaagggaatgtctggattgcctggattgcctgga
gcaattggtccgaaaggagaacttggtacagtaaatccaatacctggaccaccaggacct
cgggggccagagggtttaccaggacccccaggagcaatgggtaatgttggatctagagga
caacacggtgatttgggattacctgggtctgatggtgctccaggattttcagggactgga
tttcctggagatcctggtccaaaaggggataaaggtcttcgagggtctaaaggattacca
ggtttgccaggaaaggcaggagaaccaggctcgcctggacagcctggatacccaggagaa
aagggagaccctggattaattattcctggccaacagggtggattaggttccccaggacaa
ggcggctttccaggggtaaaaggtgacagaggaattccaggtctaccaggattcccagga
cataatggtgctgatgggccaagaggagaacctggctgtcccggagctcccggagaaaag
ggacttccagggaagcttggtgattgtcttattggtccaccaggtctcccaggtgcacat
ggtttaacaggtcaacaaggagaaagaggtgtactaggatcaaaaggagaccccagtatt
ccaggcttgggtgtcccaggattccctggacaatttgggctgcctggattgccaggtcac
caaggagacacaggatcacctggtctcaagggtcagcctggcagaccaggaataccaggt
gcaccaggccaaagaggagaacgaggtataatgggcaatttaggaattcctggacctcct
ggtgtctttggacacccaggcattccaggaaacagaggttctcctggccttccaggactg
aagggaagaaaagggtttttaggggcaaagggtgaaccaggtgataaaggatttcctgga
ccatcagagaccagagggaatcctggggataaaggagaaccaggatcaaaaggatttcca
ggaagaataggtctgaaaggagaaagaggagataaaggtatacaaggatcagcagggctt
gatgggacatcaggagtatcaggtctgccaggtcccaaaggatttgtaggtctacaagga
attcctggaagacaaggattaccaggacctccaggagacagaggtgatatgggagtgcca
ggttctaaaggggagagaggatctcaaggtttaccaggaccatccggtgcacaaggccct
ccaggccttcttggttttccaggtgataaaggagaaccagctagttcagcatctgggcct
ccaggaaaaccaggaccaaagggtgatccaggtcccccaggagaaatgggaagaaaaggg
gaaagaggatcaccaggtcagccaggacttgtaggagaacctggactacctggaaacagg
ggggattgtggaaaaccaggagctccagggccatctaaatgtgccggagatactggcgct
aaagggtgcaagggggtggcaggaccgagaggcactgaaggccctccaggtgcaatagga
gctcctggagccaacggagctgttggggaaagggggaatcaaggacgggatggtattcct
ggctccccaggggaaaagggagaacgaggtgcaccaggatggcagattaaaggtccgcaa
ggtatttctggtcctaaaggaatcaaaggtgatgtggggattcctggttgtccaggacca
gaaggtattaaaggtctaatgggggatccaggaccaattggacctcctggattgaatgga
aagccaggattcccaggtgcaccaggcataatgattcctggccagaaaggaaatagaggt
cttgccggagtggatggacgactgggtattcctggtagaccaggatcttctggaacccct
gtgtacagcataaaaggaaacaaaggtgttagaggtatagatggcataccaggaccacca
ggattggtaggcaatattggtcctccaggtttaacaggagttgaaggcaccccaggcaat
tcaggccctagaggtgaacctggctttccaggacttccaggtgtaaccggagaaaagggt
aatcgaggaccccctggaccaatgggtgcagcaggatctatcggaccaaagggcccccct
ggtcagcctggagcacctaggaaagcaacatatatcccaggaaaccaaggacctgctgga
tcacctggaagcccaggactaccaggagatccaggacctcgagggccaccaggattacat
ggacgtcaaggtgtaaaaggcctaccaggccattgtggaaatccaggcatagttggacca
gttggtccaaaaggagacaaaggatttcaaggacaaagaggatctcctgggcttattggc
tttccaggagtacggggcctacctggttccccgggtatttcaatacctggtccaacaaga
agaggcttcatctttacccggcacagccagtcaacaaagattccttcatgcccatctggg
acagctcagatctacagtggttattctcttctctttgtacaaggaaatgagcaagcacat
ggccaagaccttgggacagttggtagctgcctgcagcgatttaccaccatgccattttta
ttctgtaacaccaatgacgtttgcagttttgcttctcgcaatgactattcatactggctg
tcaactgcagcaccaatgccagaagacatggcaccaatctctggcagagccttacagccc
tatattagcagatgtattgtttgtgaaggaccagcagtggtaatagcagttcacagccaa
acaactgcaattcctttatgtcctcaaggctggatatctctctggaagggtttttccttt
gttatgtacacaagtgccggttcagaagcctctggccaagcattggcatcacctggatcc
tgcttggaagaattccgtgccattccattcatagaatgtcatggtagagggacatgcaac
tactacacaaattcctacagcttctggctggcttcactagatccaagaagaatgttcagg
aagcctttaccacagattttaaaagcaggggaattggaaaacgtcatcagccgctgtcag
gtctgcatgaagagagacagaaattcttga
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integrated database retrieval system
