Trachemys scripta elegans (red-eared slider): 117882409
Help
Entry
117882409 CDS
T07347
Name
(RefSeq) collagen alpha-3(IV) chain-like isoform X1
KO
K06237
collagen type IV alpha
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst04382
Cornified envelope formation
tst04510
Focal adhesion
tst04512
ECM-receptor interaction
tst04518
Integrin signaling
tst04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117882409
04518 Integrin signaling
117882409
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
117882409
09142 Cell motility
04820 Cytoskeleton in muscle cells
117882409
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
117882409
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
tst04147
]
117882409
00536 Glycosaminoglycan binding proteins [BR:
tst00536
]
117882409
Exosome [BR:
tst04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
117882409
Glycosaminoglycan binding proteins [BR:
tst00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117882409
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
117882409
NCBI-ProteinID:
XP_034636458
LinkDB
All DBs
Position
9:69713066..69847216
Genome browser
AA seq
1669 aa
AA seq
DB search
MRRHPGLDPSKPPAAAAPRPGFYGTHQSCVCKGKSHCYCDGMKGNKGEKGFSGAQGVPGQ
TGFCGPEGPPGPQGPTGFPGQIGLVGPKGERGMLGLPGFSGLPGLPGEPGNIGPPGGPGI
PGCNGPKGEQGFPGPPGPGGAPGKPGIDGLKGDKGCPASGYDPGYDGRGDPGLPGIRGRQ
GEPGPRGLQGLVGPQGPLGSSGVSGRMGLPGRKGVMGIKIIGTKGIQGDPGSAGPPGLPG
TVIVTLSGPDNMKGLKGDKGEKGSRGLPGPVGSLGFPGDFQSEKGDPGEPGPQGKPGKDG
TPGPHGFLGEKGERGYPGSPGVAGTKGRKGDIGPPGFPGPTKYYDEVAGEKGDEGYPGPP
GLKGQPGIPGPRGPLGVTGRPGVSRPGINGPQGYPGLKGNKGEKGQPGMNAVGSPGLHGF
PGRPGSVGSPGPAGQPGKVTFETHPPGVPGNPGCVGPPGLPGDSGVKGEEASPCNQCSYI
PGGPGLPGAPGQDGQEGVTGRQGISGPKGSRGSPGAQGPSGPQGLPGFPGDQGLKGPNGE
PGYVYPEGQKGNRGDPGIRGNPGRKGSDGLHKKHGSKGSKGPKGERGLDGSKGDRGLSGL
PGNPGLPGEMGLTGPPGYGPQGMTGPKGAKGMSGLPGLPGAIGPKGELGTVNPIPGPPGP
RGPEGLPGPPGAMGNVGSRGQHGDLGLPGSDGAPGFSGTGFPGDPGPKGDKGLRGSKGLP
GLPGKAGEPGSPGQPGYPGEKGDPGLIIPGQQGGLGSPGQGGFPGVKGDRGIPGLPGFPG
HNGADGPRGEPGCPGAPGEKGLPGKLGDCLIGPPGLPGAHGLTGQQGERGVLGSKGDPSI
PGLGVPGFPGQFGLPGLPGHQGDTGSPGLKGQPGRPGIPGAPGQRGERGIMGNLGIPGPP
GVFGHPGIPGNRGSPGLPGLKGRKGFLGAKGEPGDKGFPGPSETRGNPGDKGEPGSKGFP
GRIGLKGERGDKGIQGSAGLDGTSGVSGLPGPKGFVGLQGIPGRQGLPGPPGDRGDMGVP
GSKGERGSQGLPGPSGAQGPPGLLGFPGDKGEPASSASGPPGKPGPKGDPGPPGEMGRKG
ERGSPGQPGLVGEPGLPGNRGDCGKPGAPGPSKCAGDTGAKGCKGVAGPRGTEGPPGAIG
APGANGAVGERGNQGRDGIPGSPGEKGERGAPGWQIKGPQGISGPKGIKGDVGIPGCPGP
EGIKGLMGDPGPIGPPGLNGKPGFPGAPGIMIPGQKGNRGLAGVDGRLGIPGRPGSSGTP
VYSIKGNKGVRGIDGIPGPPGLVGNIGPPGLTGVEGTPGNSGPRGEPGFPGLPGVTGEKG
NRGPPGPMGAAGSIGPKGPPGQPGAPRKATYIPGNQGPAGSPGSPGLPGDPGPRGPPGLH
GRQGVKGLPGHCGNPGIVGPVGPKGDKGFQGQRGSPGLIGFPGVRGLPGSPGISIPGPTR
RGFIFTRHSQSTKIPSCPSGTAQIYSGYSLLFVQGNEQAHGQDLGTVGSCLQRFTTMPFL
FCNTNDVCSFASRNDYSYWLSTAAPMPEDMAPISGRALQPYISRCIVCEGPAVVIAVHSQ
TTAIPLCPQGWISLWKGFSFVMYTSAGSEASGQALASPGSCLEEFRAIPFIECHGRGTCN
YYTNSYSFWLASLDPRRMFRKPLPQILKAGELENVISRCQVCMKRDRNS
NT seq
5010 nt
NT seq
+upstream
nt +downstream
nt
atgagaagacacccagggctggatcccagcaaacccccagcagcggcggcgccacgccct
gggttctacggtacccaccagagttgtgtctgcaaaggtaaaagccactgctactgtgat
ggaatgaaaggtaataagggtgaaaaaggattttctggtgctcaaggtgtacctggccag
acaggtttctgtggccctgagggacctccagggccacagggacccacgggttttccaggg
cagataggtttagtcggacccaaaggtgaaaggggaatgctaggattacctggtttttca
ggtctcccaggtcttccaggtgaaccaggaaacattggtcctcctggaggtccaggaatt
ccaggatgcaatggcccaaagggtgaacaaggatttccagggcctccagggccaggaggt
gctccaggcaaaccaggtattgatggcctcaaaggagataaggggtgccctgcaagtgga
tatgacccgggatatgatggaagaggtgaccctggattaccaggaatacgtggacgccag
ggtgaaccaggtcctcgaggactccaagggctagttggaccacaaggccctctgggatct
tcaggtgtttcagggagaatgggacttccaggacgtaagggtgtcatggggattaagatc
ataggaaccaaaggaatacagggtgatcctggatcagcaggaccccctgggctcccagga
acagttattgtgacattaagcggaccagataatatgaagggcttgaaaggagataaagga
gagaaaggatcaaggggtctcccaggaccagttgggtcattgggttttcctggagatttt
caaagtgaaaaaggtgacccaggagagcctggcccgcagggtaaacctggaaaagatggt
acccccggtccacatggctttctgggagagaagggtgaacgcggctacccaggatcacct
ggcgtagcaggcactaaggggaggaaaggagacattggcccaccaggatttcctggtccc
acaaagtattatgatgaggtggctggtgaaaaaggagatgaaggatatccaggaccccca
ggacttaaaggtcaacctggcatacctgggccaagaggtcccctaggtgtgacaggaaga
ccaggtgtatcgagacctggcataaatggtccacaaggatatccaggactgaaaggaaat
aagggagagaaaggacagcctggcatgaatgctgtgggatctccaggacttcatgggttt
ccaggcagacctggttctgtaggatcaccaggtcctgcaggacagccaggtaaagtaacg
tttgaaacgcacccaccaggagttccaggaaaccccggatgtgtgggacctccaggactt
ccaggagacagtggagtgaaaggtgaagaagcaagtccttgtaatcaatgcagttatata
ccaggaggacctggacttcctggtgctcctgggcaagatggtcaagaaggagttactggt
agacaaggaataagtggtcccaaaggatctcgaggttctccaggggcacaagggccttca
ggtcctcaaggacttccaggttttccaggagatcaaggactgaaagggccaaacggtgaa
ccaggatatgtgtatccagaagggcaaaaaggaaacagaggagatccagggatcagagga
aatccagggaggaaaggttcagatggattgcacaaaaaacatggttcaaaaggctcaaaa
ggtcctaaaggcgaaaggggactggatggttcgaaaggggacagagggttatcaggattg
cctggtaacccaggtcttcctggagaaatggggctcactggaccaccaggatatggacca
caaggaatgacaggtcccaaaggcgctaagggaatgtctggattgcctggattgcctgga
gcaattggtccgaaaggagaacttggtacagtaaatccaatacctggaccaccaggacct
cgggggccagagggtttaccaggacccccaggagcaatgggtaatgttggatctagagga
caacacggtgatttgggattacctgggtctgatggtgctccaggattttcagggactgga
tttcctggagatcctggtccaaaaggggataaaggtcttcgagggtctaaaggattacca
ggtttgccaggaaaggcaggagaaccaggctcgcctggacagcctggatacccaggagaa
aagggagaccctggattaattattcctggccaacagggtggattaggttccccaggacaa
ggcggctttccaggggtaaaaggtgacagaggaattccaggtctaccaggattcccagga
cataatggtgctgatgggccaagaggagaacctggctgtcccggagctcccggagaaaag
ggacttccagggaagcttggtgattgtcttattggtccaccaggtctcccaggtgcacat
ggtttaacaggtcaacaaggagaaagaggtgtactaggatcaaaaggagaccccagtatt
ccaggcttgggtgtcccaggattccctggacaatttgggctgcctggattgccaggtcac
caaggagacacaggatcacctggtctcaagggtcagcctggcagaccaggaataccaggt
gcaccaggccaaagaggagaacgaggtataatgggcaatttaggaattcctggacctcct
ggtgtctttggacacccaggcattccaggaaacagaggttctcctggccttccaggactg
aagggaagaaaagggtttttaggggcaaagggtgaaccaggtgataaaggatttcctgga
ccatcagagaccagagggaatcctggggataaaggagaaccaggatcaaaaggatttcca
ggaagaataggtctgaaaggagaaagaggagataaaggtatacaaggatcagcagggctt
gatgggacatcaggagtatcaggtctgccaggtcccaaaggatttgtaggtctacaagga
attcctggaagacaaggattaccaggacctccaggagacagaggtgatatgggagtgcca
ggttctaaaggggagagaggatctcaaggtttaccaggaccatccggtgcacaaggccct
ccaggccttcttggttttccaggtgataaaggagaaccagctagttcagcatctgggcct
ccaggaaaaccaggaccaaagggtgatccaggtcccccaggagaaatgggaagaaaaggg
gaaagaggatcaccaggtcagccaggacttgtaggagaacctggactacctggaaacagg
ggggattgtggaaaaccaggagctccagggccatctaaatgtgccggagatactggcgct
aaagggtgcaagggggtggcaggaccgagaggcactgaaggccctccaggtgcaatagga
gctcctggagccaacggagctgttggggaaagggggaatcaaggacgggatggtattcct
ggctccccaggggaaaagggagaacgaggtgcaccaggatggcagattaaaggtccgcaa
ggtatttctggtcctaaaggaatcaaaggtgatgtggggattcctggttgtccaggacca
gaaggtattaaaggtctaatgggggatccaggaccaattggacctcctggattgaatgga
aagccaggattcccaggtgcaccaggcataatgattcctggccagaaaggaaatagaggt
cttgccggagtggatggacgactgggtattcctggtagaccaggatcttctggaacccct
gtgtacagcataaaaggaaacaaaggtgttagaggtatagatggcataccaggaccacca
ggattggtaggcaatattggtcctccaggtttaacaggagttgaaggcaccccaggcaat
tcaggccctagaggtgaacctggctttccaggacttccaggtgtaaccggagaaaagggt
aatcgaggaccccctggaccaatgggtgcagcaggatctatcggaccaaagggcccccct
ggtcagcctggagcacctaggaaagcaacatatatcccaggaaaccaaggacctgctgga
tcacctggaagcccaggactaccaggagatccaggacctcgagggccaccaggattacat
ggacgtcaaggtgtaaaaggcctaccaggccattgtggaaatccaggcatagttggacca
gttggtccaaaaggagacaaaggatttcaaggacaaagaggatctcctgggcttattggc
tttccaggagtacggggcctacctggttccccgggtatttcaatacctggtccaacaaga
agaggcttcatctttacccggcacagccagtcaacaaagattccttcatgcccatctggg
acagctcagatctacagtggttattctcttctctttgtacaaggaaatgagcaagcacat
ggccaagaccttgggacagttggtagctgcctgcagcgatttaccaccatgccattttta
ttctgtaacaccaatgacgtttgcagttttgcttctcgcaatgactattcatactggctg
tcaactgcagcaccaatgccagaagacatggcaccaatctctggcagagccttacagccc
tatattagcagatgtattgtttgtgaaggaccagcagtggtaatagcagttcacagccaa
acaactgcaattcctttatgtcctcaaggctggatatctctctggaagggtttttccttt
gttatgtacacaagtgccggttcagaagcctctggccaagcattggcatcacctggatcc
tgcttggaagaattccgtgccattccattcatagaatgtcatggtagagggacatgcaac
tactacacaaattcctacagcttctggctggcttcactagatccaagaagaatgttcagg
aagcctttaccacagattttaaaagcaggggaattggaaaacgtcatcagccgctgtcag
gtctgcatgaagagagacagaaattcttga
DBGET
integrated database retrieval system
