Trachemys scripta elegans (red-eared slider): 117882410
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Entry
117882410 CDS
T07347
Symbol
COL4A4
Name
(RefSeq) collagen alpha-4(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst04510
Focal adhesion
tst04512
ECM-receptor interaction
tst04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117882410 (COL4A4)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
117882410 (COL4A4)
09142 Cell motility
04820 Cytoskeleton in muscle cells
117882410 (COL4A4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
tst04147
]
117882410 (COL4A4)
00536 Glycosaminoglycan binding proteins [BR:
tst00536
]
117882410 (COL4A4)
Exosome [BR:
tst04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
117882410 (COL4A4)
Glycosaminoglycan binding proteins [BR:
tst00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117882410 (COL4A4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
117882410
NCBI-ProteinID:
XP_034636460
LinkDB
All DBs
Position
9:complement(69578533..69657434)
Genome browser
AA seq
1481 aa
AA seq
DB search
MGRHGLPGQPGLQGATGLPGLPGEQGNPGIGVDGQKGEPGDVGPPGSPGQPLLVWPPGSF
LVKGEKGVKGMPGLVGPKGSPGPKGAPGNGEKSEKGIPGVPGMQGSPGSCGARGFPGIKG
ESGVPGVPGQAGYAGIKGDRGERGQPGLPGVFGTPPVAMKGPRGDPGSPGPSGEEGLIGL
TGPPGPSGRPGEDGASLPGLPGACGEQGPKGSQGDPGLPGTAESTPGRPGSPGAPGLPGA
PGRQGLPGPPGIVCHGRGLRGQQGIKGQMGPLGRRGEKGEKGNHGHCSCDLGPAGPPGRR
GPLGHQGRKGQMGFPGSYGEKGDPGFSGTVGPTGLPGKPGSSGITGEKGEKGDLARVKIK
GIKGKRGPLGAPGLPGQKGTAGRDGDPGLPGERGIQGDGGSALPGDKGFLGAPGLPGSRG
PMGPSGLGFPGPPGIGGHPGDPGSTGVSGLPGLKGQKGDIHCYVPPYPGSPGPPGFQGAQ
GPKGLRGHPGPPGPNGFDGQKGQRGKPGTSGDIGPNGFRGNAGDPGDEGERGSSPDGAPG
FPGTPGLAGQKGVPGDTSYGLPGIPGHRGLPGLSGSQGIRGESGAPGPQGQSGRPGFPGA
KGLRGRKGEIGAPGSPGQPCDKGLQGPPGQPGVLGQRGPPGLPGFKGQKGDMGPPGPAGM
KGLPGTPGVPGSPGPPGPRGYPGLPGNDGLPGLPGQRGSKGIQGIQGFPGIPGKEGKTGI
PGGNGEQGEMGSRGPYGECGDGGQKGERGAQGDSGFITLWLEKGQKGEQGLPGEAGFPGE
TGEKGSPGIRGISGFPGKDGLPGIQKGEPGDSGQIGFPGLPGFPGSAGLGGISGFQGQPG
DQGERGLPGIPGCPGHDGTKGLKGNRGDSGSQRGPPGQRGPPGDHGSPGPCGFPGEQGLP
GFQGEPGRQGPKGMPGSPGANGFPGAICDSGLPGVPGEQGNTGPSGAAGLPGLPGPPGRK
GLSGLPGLDGLNGLQGQKGSPGVPGQSEIGPSGSTGAPGPKGDKGEPGQPGVSLPGPPGD
MGLPGHPGRTGGPGPAGPVGRSPETAASGPPGDQGPPGLHGIRGLPGLPGPPGKTIFVKG
DPGEFGVPGAPGIPGQPGQQGAKGFPGNQGREGLKGPMGNPGPQGLPGPFGPSGDRGFQG
QPGPRGPKGCRGDPGEPGKTEHSPCPKTPGPRGVIGQRGAEGPIGFPGPIGYPGPPGSKG
EEGLFGLPGQDGLPGPPGPSGDQGVIGERGYTGPEGPPGQAGIPGPPAPETRAASGFLLI
LHSQSDKEPFCPEGMPRLWTGYSLLYLEGQEKAHNQDLGLAGSCLPVFNTMPFVYCNINQ
VCYYASRNDKSYWLSTAAPLPMMPLSEDEIQPYISRCAVCEASAQAVAVHSQDQSIPPCP
LNWRSLWIGYSFLMHTGSGDQGGGQSLMSPGSCLEDFRSAPFIECQGQRGTCHFFANEYS
FWLTIVRPELQFVSAPLSETLKEGQEQRKKISRCQVCMKHG
NT seq
4446 nt
NT seq
+upstream
nt +downstream
nt
atgggccgacatggattgccaggccaaccaggcttgcagggagctacaggccttcctggt
ttgccaggtgaacagggcaatccaggtattggagtggatggacaaaagggggagccgggt
gatgttggacctcctggatctccaggacagccattgttggtttggccgcccggttctttc
ctggttaaaggagaaaagggtgtaaaaggaatgcctgggttggtaggacccaaaggatca
cctgggcccaaaggtgcacctggaaatggagagaagagtgaaaaaggtattcctggagtc
cctggaatgcagggtagccctggttcttgtggagctcgcggttttccaggaataaagggg
gaaagtggagttcctggtgttcctggtcaggctggttatgcaggtataaagggggatcgt
ggagaacgagggcaaccaggcctgcctggagtttttggaacaccacctgttgctatgaaa
ggtcctcgaggggatcctggatcaccaggtccttctggagaggaggggttgattggacta
actggtcctccaggcccatcaggaagacctggtgaagatggagcaagcctccctggtctg
ccaggagcatgtggggaacaaggtcctaaaggttctcaaggggaccctggtctccctgga
acagctgaatcaactccaggaagaccagggtctccaggagcaccaggattaccaggagca
ccgggaagacagggtttgcctggaccacctggtatagtttgtcatggcagaggacttcgt
ggacagcaaggaataaaaggccaaatggggcccctgggaagaagaggtgaaaaaggagaa
aaagggaatcacggccactgttcatgtgaccttggtcctgctggcccacctggtagacga
gggccacttggtcatcaaggaaggaaaggacagatgggatttcctggaagctatggagaa
aagggtgatccaggtttctctggcacagtaggaccaacaggactcccaggcaaacctggt
tcttctggaataactggtgaaaaaggagaaaagggtgacctggccagagtgaaaatcaaa
ggaataaaaggaaaaagaggacctctgggggctccagggcttccaggccaaaaaggtact
gctggcagagatggagatccaggattgcctggagagagaggaattcaaggtgatggtgga
tcagcactgccaggtgataaaggttttcttggggcaccaggacttcctggttcaagaggg
cctatgggaccatcaggtttgggatttcctggcccaccgggaatcgggggtcatcctgga
gacccaggaagtactggtgtaagtgggctacctggtctaaagggtcaaaaaggtgacatc
cactgttatgttccaccatatcctggaagtccaggccctccaggttttcaaggggctcaa
ggaccaaagggattaagaggacacccgggtcctcctgggccaaatggctttgatgggcaa
aagggtcaacgaggcaaaccagggacatcaggtgatatagggccaaacggctttcgaggc
aatgctggtgatccaggtgatgaaggtgaaagaggttcttctcctgacggtgccccaggt
tttcctggcactcctggacttgcaggccagaaaggtgttccaggtgatactagttacggt
cttccaggaattccaggccacagaggattgccaggattatctggttcacaaggaatacga
ggtgaatcaggtgctcctgggccacaaggacagtctggcagaccaggatttccaggtgct
aaaggtctgagaggcagaaaaggtgaaataggcgctccaggctcacccggtcagccatgt
gataaaggcttacaagggccaccaggacagccaggagttcttggacagcgaggccctcca
ggcttaccaggttttaaaggtcagaaaggagacatgggcccaccagggccagctggaatg
aaaggcctaccaggaactcctggtgtaccagggtcccctggtcctccaggccctcgagga
tatccaggacttcctgggaatgatggattacctggactcccaggccaacgaggtagcaaa
ggcatccaaggcatccaaggtttcccaggaatcccaggaaaagaaggaaagacaggaatc
ccgggtggaaatggtgaacaaggagaaatgggttcaagggggccttatggagaatgtggg
gatggagggcaaaaaggtgaaagaggtgctcaaggagacagtggcttcattaccttatgg
ctggaaaaaggacaaaagggagaacaagggcttcctggtgaggctgggtttccaggggaa
acaggtgaaaaaggcagtcctggaatcagagggatctcaggatttccaggcaaagatgga
ctcccaggaattcagaagggtgaacctggtgatagtggacagattggttttccagggctg
ccaggcttcccaggatcggcaggtttaggaggaattagtggttttcaagggcaaccgggt
gaccagggtgaacgaggtttaccgggaattcctggatgtccagggcatgatggtacaaaa
ggacttaaaggtaacagaggtgactcgggcagtcaacgtggtccacctggtcaaagaggg
cctccaggagatcatggatcaccaggaccctgtggattcccaggagagcagggtttacca
ggtttccaaggggaacctggaagacaaggacccaaggggatgcctggatccccaggagca
aatggctttccaggtgccatatgtgattcaggattgccaggagttccaggtgaacaaggt
aataccgggccttcaggagctgcaggattgccaggattacctggtcccccaggcaggaaa
ggtttatcagggttgcctggattagatggcttgaatggactgcaaggtcaaaagggctca
ccaggagttccaggtcaaagtgaaatagggccttcaggatccacaggagcacctggacca
aaaggagacaagggtgaacctggacagccaggagtttctcttccaggacctcctggagac
atgggtttgccaggacacccaggtagaacaggaggtcctgggcctgcgggacctgtggga
agatctcctgaaactgccgcttctggtcctccaggtgatcaggggccacctggcttacat
ggcatcagaggcctgcctggcctgcctggccctcccggaaagactatctttgtgaaaggc
gatccaggggaatttggtgttccaggtgcacccggtattcctggccagccagggcagcaa
ggagccaaaggctttccaggaaatcaaggaagagaaggcctgaaaggtccgatgggaaac
cctggcccccagggtctccctggcccttttgggccatctggggatcgaggttttcaagga
caacctggccctcgaggtcctaaaggttgcagaggtgaccctggtgaaccaggaaaaaca
gaacactccccatgtcccaagacaccgggtcctcgtggagtaataggacaaagaggagct
gaagggcctataggatttccagggccaataggttaccctggacccccaggaagtaaaggt
gaagaagggttgtttggcttgccaggtcaagatggtttacctggtccaccaggaccctca
ggtgaccaaggtgtcataggagaacgaggatacactggtccagaaggtccacctggccaa
gctgggatcccaggaccaccagcgcctgaaactagagctgcaagtggattcctgctcatt
cttcacagtcagtcagataaagaaccgttttgtcctgagggaatgccaagattgtggaca
ggatatagtctgctgtatctggaaggacaggagaaagctcataatcaagatcttggtctg
gctggatcctgtcttcctgtattcaacaccatgccatttgtctactgcaacatcaaccaa
gtttgttactatgccagtcgaaatgataagtcctactggctgtcaactgctgctccttta
ccaatgatgccgctctctgaagatgaaatacaaccctacattagcagatgtgctgtatgt
gaggcctctgcccaagctgtagcagttcatagccaagatcagtccattcccccctgccca
ttgaactggagaagtctttggataggctattcttttttaatgcacactgggtctggagat
cagggaggtggacagtcccttatgtcacctggaagttgccttgaagactttagatcagca
ccattcatcgaatgccagggtcagcggggaacatgccatttttttgctaatgaatatagc
ttctggttaacaatcgtcaggccagaattgcagtttgtgtctgctcctctgtcagaaacc
cttaaagaagggcaggaacagcgcaaaaaaatcagcagatgtcaggtctgcatgaagcat
ggctaa
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integrated database retrieval system
