Trachemys scripta elegans (red-eared slider): 117882419
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Entry
117882419 CDS
T07347
Symbol
U2SURP
Name
(RefSeq) U2 snRNP-associated SURP motif-containing protein isoform X1
KO
K12842
U2-associated protein SR140
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117882419 (U2SURP)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tst03041
]
117882419 (U2SURP)
Spliceosome [BR:
tst03041
]
Complex A
U2 snRNP components
U2 related factors
117882419 (U2SURP)
Complex B
117882419 (U2SURP)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Surp
RRM_1
cwf21
CID
CTK3
SET_assoc
RRM_7
Motif
Other DBs
NCBI-GeneID:
117882419
NCBI-ProteinID:
XP_034636483
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All DBs
Position
9:72690350..72758206
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AA seq
996 aa
AA seq
DB search
MADKTPGGSQKASAKVRLPDTVQTTGSADSHPLLENKLKAFSIGKMSAAKRTLSKKEQEE
LKKKVMEDEKAAAEIYEEFLAAFEGSDGNKVKTFVRGGIVNASKDEHETDEKRGKIYKPS
ARFSDQKNQPNQPSSNEKPPSLLMIETKKPPLKKGEKEKKKSNLELFKEELKQIQEERDE
RHKTKGRLSRFEPPQSDSDGQRRSMDAPSRRNRSSGVLDDYAPGSHDVGDPSTTNLYLGN
INPQMNEEMLCQEFGRFGPLASVKIMWPRTDEERARERNCGFVAFMNRRDAERALKNLNG
KMIMSFEMKLGWGKAVPIPPHPIYIPPSMMEHTLPPPPSGLPFNAQPRERLKNPNAPMLP
PPKNKEDFEKTLSQAIVKVVIPTERNLLALIHRMIEFVVREGPMFEAMIMNREINNPMFR
FLFENQTPAHVYYRWKLYSILQGDAPTKWRTEDFRMFKNGSFWRPPPLNPYLHGMSEEQE
TEAFVEEPNKKGALKEEQRDKLEEILRGLTPRKNDIGDAMVFCLNNAEAAEEIVDCITES
LSILKTPLPKKIARLYLVSDVLYNSSAKVANASYYRKFFETKLCQIFSDLNATYRTIQGH
LQSENFKQRVMTCFRAWEDWAIYPEPFLIKLQNIFLGLVNIIEEKEIEEVPDDLDGAPIE
EELDGAPLEDVDGIPIDAAPIDDLDGIPIKSLDDDLDGVPLDTSEESKKNEPIFKVAPSK
WEAVDEAELEAQAVTTSKWELFDQHEESEEEENQNQEEESEDEEDTQSSKSEEQHMYSNP
IKEEMPESKSSIKYSEMSEEKRAKLREIELKVMKFQDELESGKRPKKPGQSFQEQVEHYR
DKLLQRLFLITQEKEKELERERERDKKDKEKFESRSKDKKEKEECTPTRKERKRRHSTSP
SPSRSSGSRRAKSPSPKSERSERSERSHKETSRSRSSHKDSPRDVSKKAKRSPSGSRTPK
RSRRSRSRSPKKSGKKSRSQSRSPHRSHKKSKKSKH
NT seq
2991 nt
NT seq
+upstream
nt +downstream
nt
atggcggacaaaacgccaggcgggtcgcagaaagccagtgcgaaggtcagactgccagat
acggtacaaacgactggatctgccgatagtcaccctcttttggaaaacaaacttaaagca
ttcagtattggcaaaatgagtgctgccaagaggactttaagtaagaaggaacaagaggag
ttaaaaaagaaggtaatggaggatgagaaggcagctgcagaaatttatgaagaattcctt
gctgcctttgaaggaagtgatggtaataaagtgaaaacatttgtaagaggaggaattgtt
aatgcatctaaagatgaacatgaaacagatgaaaaacgaggtaaaatctacaaaccttca
gcacgattttcagatcaaaaaaatcagccaaatcagccatcctctaatgagaagcctcca
tcccttctaatgatagaaaccaaaaagcctcctttgaagaagggggagaaagaaaagaaa
aagagcaatttagaactcttcaaagaagaactaaaacaaattcaagaggagcgtgatgaa
aggcataaaacaaaaggtagattaagtcgttttgagccacctcagtcagattcagatggc
cagcgccgttccatggatgctccttcaagaagaaacagatcttctggtgtactggatgat
tacgcaccaggttcacatgatgttggagatccaagcacaacgaatttataccttggaaac
attaatcctcagatgaatgaagagatgttatgtcaagaatttgggcgctttggaccatta
gctagtgttaaaattatgtggccaagaaccgatgaggaaagagcaagagagaggaactgt
ggttttgttgcctttatgaacaggagagatgctgaacgagcattaaagaatttaaatggc
aagatgattatgtcctttgaaatgaagctaggttggggcaaagctgtaccgattccacca
cacccaatatacattccaccttctatgatggaacacaccctcccaccacctccatcagga
ctgccttttaacgctcagcctagagagagattgaagaaccctaatgctccaatgttacca
ccaccaaaaaacaaggaggattttgagaagactctgtcgcaagccatagtcaaagtggtt
atcccaacagaaaggaatttgctcgcattgatacatcgaatgatagagtttgtggtacgt
gaagggcctatgtttgaagccatgatcatgaaccgagaaatcaacaatccaatgttcagg
tttttgtttgaaaaccagactccagcccatgtatattacagatggaagctttattcaatt
ttacagggagacgctccaaccaagtggaggacagaagactttcgtatgttcaaaaatgga
tcattttggaggccaccaccattaaatccatacctgcatgggatgtccgaagagcaagaa
actgaagcatttgtagaggaacctaacaagaagggggcacttaaggaggagcagagagac
aaattagaggaaatcctgcgtggattaacgcctcgtaagaacgatattggcgatgcaatg
gttttctgtcttaataatgctgaagctgctgaagaaattgtagactgcattacggagtca
ttgtctattctgaagactcctcttcctaaaaagattgcaagattatatttggtgtcggat
gtgttatacaactcttcagctaaagttgccaatgcttcatattatagaaaattttttgaa
acaaaattatgtcagatattttctgatctcaatgctacctaccgtacaatacaaggccat
ttacagtcggaaaatttcaagcaacgggtaatgacatgcttcagagcatgggaagactgg
gcaatttatccagaaccctttttgatcaaactgcagaatattttcttggggcttgtaaat
attatagaagaaaaagaaatagaggaagtaccagatgatcttgatggcgctcccattgag
gaagaacttgatggtgcaccactggaagatgttgatggaattcctattgatgctgctccg
atagatgatcttgatggaatccctattaaatcgcttgatgatgatcttgatggtgtacct
ttggatacttctgaagagtctaaaaagaatgagcctatattcaaagttgctccttcaaaa
tgggaagcagtggatgaagcagaattggaagctcaggctgttacaacttctaaatgggag
ttgtttgaccagcatgaagaatcagaagaggaagaaaatcaaaatcaggaagaagaaagc
gaagatgaggaggatactcagagttctaaatcagaagagcagcatatgtactccaatccc
atcaaagaagaaatgcctgaatccaagtcatcaatcaagtactctgaaatgagcgaagaa
aagcgcgccaaactcagagaaattgagcttaaggtcatgaaatttcaagatgagttggag
tctggaaaaaggcccaagaaaccaggccagagttttcaggaacaggttgaacactataga
gacaaacttcttcagaggttgtttttaataacccaggaaaaagaaaaggagctggaaaga
gaacgagagagagacaagaaagacaaggaaaaatttgaatccagatccaaagacaagaag
gaaaaagaagaatgtacaccaacaagaaaagaaaggaaaagacgacacagtacatctccc
agtccatctcgcagcagtggcagtagacgagcaaaatccccatcaccaaaatcagagcgc
tcagagcgatctgaaagatcccacaaagagacctcgcgttccaggtcatctcacaaagat
tctcctagagatgtcagtaaaaaagccaaaaggtcaccatctggctcaaggacacccaaa
agatcaagaaggtcacgatccaggtcccctaaaaagtcagggaaaaaatccaggtcgcag
tcccgttctccacacagatctcacaagaagtcaaagaaaagcaaacactga
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