Trachemys scripta elegans (red-eared slider): 117882605
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Entry
117882605 CDS
T07347
Symbol
DCP1B
Name
(RefSeq) mRNA-decapping enzyme 1B isoform X1
KO
K12611
mRNA-decapping enzyme 1B [EC:3.-.-.-]
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117882605 (DCP1B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tst03019
]
117882605 (DCP1B)
Messenger RNA biogenesis [BR:
tst03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
117882605 (DCP1B)
mRNA degradation factors
5'-3' decay
Decapping complex
117882605 (DCP1B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DCP1
mRNA_decap_C
WH1
DUF6589
Motif
Other DBs
NCBI-GeneID:
117882605
NCBI-ProteinID:
XP_034637001
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All DBs
Position
1:complement(108192483..108248191)
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AA seq
610 aa
AA seq
DB search
MAAVVAGAALLGKGLDISLAALQRHDPYISSIVDVASQVALYTFGHRANEWEKTDVEGTL
FVYTRSASPRHGFTIMNRLSMENRTEPITKDLDFQLQDPFLLYRNARLSIYGIWFYDKEE
CQRIAELMKNLTQQEQFKARHGAGAGASPMIQSSGDSKEVDILRMLTKAKDEYTKCKTCS
EPKQMTSSSAIYDNPNLIKPIPVKPSETQHQQIPQQGKNMDSEPQHLSLTALFGKQENPT
IYQDVPEQSQKKHQLNLSVRQKVVRSLSYEEPSRHSPSAEKQLCPAIQKLMVRGTDLHPL
SELPENRLCENGNVRSVGEVFTGLFQPVTSHGIVTSHPAQDTTGTQSLLQKLQGQSGSVT
KMDPSATGTVSSTASIFSRTSAATASAAQINNMTQPHLVYFNGSLPTQTLGPQTVGKEQS
KLPRQPLSLSGNQSTSSGVISPQELLKKLQIVQQEQQLHVSSRPTLAAKFPVVTQNTNTL
KPLDAWIDKTSGAQKQSPLFQVISPQRIPATVTPALLMSPMLFTQSTPAPPKASESGCLP
PANQESASNSASLLLPMQNPEPSVVNSNSLTKMQLQETLLHLIQNDDNFLNIIYEAYLFS
VRKAAIKKSM
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggtggtggccggggccgccctgctgggcaaggggctggacatcagcctggcg
gcgctgcagcggcacgacccctacatcagcagcatcgtggacgtggccagccaggtggcg
ctctacacctttgggcaccgcgccaacgagtgggagaaaactgatgtggaaggaacactc
tttgtttacacaagatcagcttctcccaggcatggcttcaccattatgaacaggctgagc
atggaaaatcgaacagaacccatcactaaagacctagatttccagctgcaggaccctttt
ctgctttacagaaatgccagattgtccatttatggaatttggttttatgataaggaagaa
tgccaaagaattgcagagctcatgaaaaatctaactcagcaggagcaattcaaagcacgg
cacggggctggagcaggagcctctccaatgatccagagctctggtgatagcaaggaagtg
gatatcttacggatgcttactaaggccaaagatgaatataccaagtgtaagacctgttca
gagccaaaacaaatgaccagttcctctgctatctatgacaaccccaacctgatcaaacca
ataccagtgaagcccagtgaaactcagcaccaacaaatacctcagcaaggcaagaacatg
gactccgaaccacaacacttatctttgacagcactgtttggaaaacaagaaaatcctacc
atataccaagatgtcccagaacaatcacagaaaaagcaccaacttaatctttctgtcagg
cagaaggtagtgcgttcgctgtcctatgaggaacctagcagacattcaccctcagcagag
aagcagctttgcccagctattcaaaaacttatggtgcgtgggacagaccttcatccactc
tctgagcttcctgagaatcgactgtgtgaaaacggcaatgtccgctccgtaggggaggtt
ttcactggactcttccaaccggtgacttctcatggtattgtaacatctcatccagcccag
gacacaactggcactcaaagcttgttacagaaactgcagggacaatcaggatcagtgacc
aaaatggacccaagtgcaacaggtactgtaagttcaacagcttcaatcttcagcaggact
tctgctgctacagcatcagcagcacagataaataacatgacccagccacatctggtatat
ttcaatggctctcttccaacccagactttagggcctcagactgttggtaaagaacagtcc
aaacttcctagacagccactttccctctcgggcaaccaatcaaccagttctggagtgatt
tcaccccaagagttactgaaaaaactccagatagtgcaacaggagcaacagttacatgtg
tccagcagacctaccttggcagctaagtttcctgtagttactcagaacaccaacactcta
aaacccttggacgcctggatagacaagacatcaggtgcacaaaagcagagccctctcttt
caggtcatctcacctcagcgcattcctgctactgtgactcctgcactgctgatgtccccc
atgctgttcacacagtccacacctgctccaccaaaggcaagtgaaagtgggtgcttacca
ccagcaaatcaagaatctgcttctaattcagctagccttctccttcctatgcagaatcca
gagccatctgtcgtaaacagcaactcattgaccaagatgcagcttcaggaaacactttta
cacctgatccagaatgacgacaacttcttaaacattatctatgaagcttatctcttcagt
gtgagaaaggcagcaatcaaaaagtctatgtaa
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