Trachemys scripta elegans (red-eared slider): 117882670
Help
Entry
117882670 CDS
T07347
Symbol
UPF3B
Name
(RefSeq) regulator of nonsense transcripts 3B
KO
K14328
regulator of nonsense transcripts 3
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst03013
Nucleocytoplasmic transport
tst03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
117882670 (UPF3B)
03015 mRNA surveillance pathway
117882670 (UPF3B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tst03019
]
117882670 (UPF3B)
Messenger RNA biogenesis [BR:
tst03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
117882670 (UPF3B)
mRNA cycle factors
P-body specific factors
117882670 (UPF3B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
Motif
Other DBs
NCBI-GeneID:
117882670
NCBI-ProteinID:
XP_034637150
LinkDB
All DBs
Position
9:complement(13163480..13173147)
Genome browser
AA seq
467 aa
AA seq
DB search
MKEDKENTRPKEKRAPGGPLDLRGGGEPERLERPKDKKETLSKVVIRRLPPSLTKEQLEE
HLQPLPEHDYFEFFANDSSLYPHMFSRAYINFKNQEDIVLFRDRFDGYVFVDHKGQEYAA
IVEFAPFQKSAKKKNKKKDAKTGTIDDDPEYKKFLESYSADDEKLTSTPETLLEEIEARN
KELIAKKTTPLLNFLKNKQRLREEKREERRRRELERKRQREEERRKWKEEERRKRKEAEK
LKKVDKCPEKERDKSKDEPKIKLLKKPEKDERDLEKKEKFKKLEKEIVREEKAAGALISV
SAKRSDGENKEEKAKKPEDEYGKDYRERERDFEREREYERLQREKQRRQDEERRRQKERF
EKEKVFRKREEEVKKEINSFREKGRKSELPDFTGNIEKAEKITKDDKKEDAAKRDRIRNK
DRPAMQLYQPGVRSRSRLCPYEDMATKSVDQGADKQESETSNTKEEE
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaggataaggagaacactaggccgaaagagaagcgggcgcccgggggccccctg
gatctcagggggggcggggagcccgagcggctcgagcggccgaaggacaagaaggagacg
ctcagcaaggtggtaattcgacgcttgcctcctagcttgactaaggaacaacttgaagaa
catcttcagcctttgcctgaacatgactattttgaattctttgctaatgattccagtttg
tatcctcacatgttttccagagcatacatcaactttaaaaaccaagaagacatagtactg
ttcagggatcgctttgatggttatgtttttgttgatcacaaaggtcaggagtatgctgcc
atagtagaatttgcacctttccaaaaatctgcaaaaaagaagaataagaaaaaggatgcc
aaaactgggactattgatgatgacccagagtataagaagtttttggaaagttacagtgca
gatgatgaaaagttaacatcgactcctgaaacactactagaggaaatagaggcaagaaac
aaagagttaatagctaaaaagacaactccccttctgaacttcttgaaaaacaaacagaga
ctgagagaagaaaaaagagaggagaggagaagaagggaactggaaagaaaaagacaaaga
gaagaagaaaggaggaaatggaaagaagaagaaagaaggaagagaaaagaagcagaaaaa
ctgaagaaagttgataaatgcccagaaaaagaaagggataaatcaaaggacgaaccaaag
attaagctacttaagaaaccagagaaagatgaaagagacttggagaaaaaggaaaagttc
aagaaactggaaaaagaaatcgtgagggaagaaaaggctgctggtgctctaatcagcgtg
tcagccaaacgatccgatggggagaataaagaggagaaggcaaaaaaacctgaagatgaa
tatggaaaagattacagggagcgggagagagacttcgaaagagagagagaatatgagaga
ctgcagcgggagaaacaaagacgccaagatgaagagcgtcgtaggcagaaggaacgcttt
gagaaagaaaaagtttttagaaaaagagaggaagaggtgaaaaaggagataaactcattc
agagagaaaggaaggaaaagtgagcttccagactttacaggcaacatagaaaaagctgag
aaaataaccaaagatgacaaaaaagaggatgcagctaagagagatcgcatcagaaataag
gatcgtccagcaatgcagctataccagccaggagttcgaagtcgaagtagactgtgtcct
tatgaagatatggctacaaagtctgtggaccaaggagcagataaacaggaaagtgagacc
agtaatacaaaagaagaggagtga
DBGET
integrated database retrieval system
