Trachemys scripta elegans (red-eared slider): 117882769
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Entry
117882769 CDS
T07347
Symbol
ATG16L1
Name
(RefSeq) autophagy-related protein 16-1 isoform X1
KO
K17890
autophagy-related protein 16-1
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst04136
Autophagy - other
tst04140
Autophagy - animal
tst04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
117882769 (ATG16L1)
04136 Autophagy - other
117882769 (ATG16L1)
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
117882769 (ATG16L1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tst04131
]
117882769 (ATG16L1)
03029 Mitochondrial biogenesis [BR:
tst03029
]
117882769 (ATG16L1)
Membrane trafficking [BR:
tst04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
117882769 (ATG16L1)
Others
Specific organelles associated proteins
Auto phagosome
117882769 (ATG16L1)
Mitochondrial biogenesis [BR:
tst03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
117882769 (ATG16L1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG16
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
WDR55
EIF3I
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR75_1st
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
Beta-prop_SCAP
Beta-prop_DCAF4
Beta-prop_RIG_2nd
WDR90_beta-prop_4th
Beta-prop_EIPR1
ANAPC4_WD40
eIF2A
NBCH_WD40
Beta-prop_IFT122_1st
Beta-prop_DCAF12
Beta-prop_IFT140_1st
WD40_RFWD3
Beta-prop_NWD2_C
Beta-prop_HPS5
Beta-prop_WDR19_1st
INO80F
DUF7310
AP5B1_middle
Peptidase_M15_4
HEF_HK
HTH_6
V_ATPase_I
Lipoprotein_6
WH_CYT4
Synaptobrevin
CCDC93_CC
Motif
Other DBs
NCBI-GeneID:
117882769
NCBI-ProteinID:
XP_034637428
LinkDB
All DBs
Position
9:56187135..56213430
Genome browser
AA seq
623 aa
AA seq
DB search
MTSGLRAASFPTWKRHIAEELRRRDRLQRQAFEEIILQYNKLLEKTDLHAVLADKLQAEK
YDLQSRHEISPGHDGTRNEAQLQEMAQLRIKHQEELTELHKKRGELAQSVIDLNNQMQQK
DKEMQMNEAKIAEYMQKISELETECQELRSKLQELERANQTLKDEYDALQITFTALEEKL
RKTTEDNQELVTRWMAEKAQEANRLNAENEKDSRRRQAKLQKELAEAAKEPLPVEQDDDI
EVLVDETSDPAEETSPVRAVSRTSSKRLSQPAGGLLDSITNIFGLSESSLLGHHSSDAAR
RRSLSSFPAPQENVDVHPGSSKEVRVPTTAVYVFDAHDGEVNAVQFSPASRLLATGGMDR
RVKLWEVFGDRCELKSSLSGSNAGITSIEFDSAGSYLLAASNDFASRIWTVDDYRLRHTL
TGHSGKVLSAKFLLDNARIVSGSHDRTLKLWDLRSKVCIKTVFAGSSCNDIVCTEQCVMS
GHFDKKIRFWDIRTESIVQELELFGRITALDLNPERTELLTCSRDDLLKIIDLRVNAVKQ
TFSAQGFKCGSDWTRVVFSPDGSYVAGGSADGVLYIWNVLTGKVERTLAKHHSSSINAVA
WSPAGAHVVSVDKGNKAVLWSEF
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atgacttctgggctcagagctgcgagtttccccacgtggaaacgtcacattgcagaggag
ctgaggcgccgggaccggctgcagagacaggcctttgaagagatcatcctccagtataac
aagctgctagagaagactgatctccatgccgtgctggctgataagctgcaagcagaaaag
tatgacttacaaagcagacatgagatcagtccagggcatgatggcacaaggaatgaagct
caattgcaggaaatggcccagctgaggattaaacatcaagaggagctgacagagctgcat
aagaagcgtggcgagttggcccagtcagtgattgatttgaataaccaaatgcagcagaaa
gacaaggagatgcagatgaatgaagcaaagattgcagaatacatgcaaaagatctctgag
ctggaaacagagtgccaggaattgcgcagcaagctgcaagaacttgagcgagccaatcaa
acactgaaggatgagtatgatgctctccagatcaccttcactgccctagaagagaaactg
aggaaaactactgaagacaaccaagagctggtcacacgttggatggcagagaaggctcag
gaagctaatcggctcaatgcagagaatgagaaggactcgaggaggcgacaagccaagttg
cagaaagagctagcagaagctgccaaggaaccactgccagttgaacaggatgatgatatt
gaagtgcttgtggatgaaacttctgacccagctgaagagacttccccagtgcgagctgtc
agccggacatccagtaagcgactgtcccagccagctggaggccttctggactctatcact
aatatttttggtctgtctgagtcttcccttttgggacatcactcttctgatgctgccagg
agacgctctctgtcctcatttcccgctccccaggaaaatgtagatgtgcatccaggttcc
agtaaagaagtgagagtgcccactactgcagtgtatgtctttgatgcacatgatggagaa
gtgaacgcagtgcagttcagtcctgcttcccggttactagcaacaggaggcatggatcgg
agagttaaactctgggaagtctttggagacaggtgcgagctgaaaagttctctctctggc
agtaacgcagggattacgagtatcgaatttgacagtgctggctcttatctcttagcagct
tcaaatgacttcgccagcagaatctggactgtagatgactatcgattacggcacacactg
acaggccacagtgggaaggtgctgtcagccaagttcttgctggataatgcacgcatcgtg
tcagggagtcatgaccggacactcaagctctgggacctgcgcagcaaagtttgtataaaa
acagtatttgcaggatcaagctgcaatgatatagtgtgcacagagcagtgtgtgatgagt
ggacattttgacaagaagattcgcttctgggacatcaggactgagagcatagtgcaggag
ctggaactgtttgggaggatcactgctttagacctgaacccagagagaacagagctcttg
acctgttcccgagatgatctgctgaaaatcattgatttgcgagtcaatgctgtcaaacag
actttcagtgcccagggattcaaatgcggatctgactggaccagagtcgtgttcagccct
gacggtagctatgtggcaggtggttcagctgatggggtcctgtacatctggaatgtgctc
actgggaaagtggagagaactcttgcaaagcatcacagctcctctatcaatgcagtggca
tggtcaccagccggtgcccatgtggtcagtgtggacaaaggaaataaggctgtcctgtgg
tctgaattttga
DBGET
integrated database retrieval system
