Trachemys scripta elegans (red-eared slider): 117882975
Help
Entry
117882975 CDS
T07347
Symbol
VPS8
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
117882975 (VPS8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tst04131
]
117882975 (VPS8)
Membrane trafficking [BR:
tst04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
117882975 (VPS8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_VPS8
TPR_Vps8
zf_RING_Vps8
VPS8_N
TPR_VPS8_2
zf-RING_Vps41
WD40_CDC20-Fz
zf-RING_11
zf_RING_Vps8_fungal
zf-RING_2
zf-RING_UBOX
Motif
Other DBs
NCBI-GeneID:
117882975
NCBI-ProteinID:
XP_034637765
LinkDB
All DBs
Position
9:complement(54231050..54496019)
Genome browser
AA seq
1446 aa
AA seq
DB search
MEPESLGAEQGASLPGPAEELGTLLGQDAALQKLSGEELDRELESKSDLIDDKEFDIPQV
DTPPTLESILNETDDEEESFILEDPSLLNIDNIDTHSYDTSSLASSDSGDRTHLKRKKKL
PDSFSLHGSVVRLSLLKGISAQIVSAADKVDAGLPTAIAASSLIAVGTSHGLALIFGKDP
NQALRLCLGSTAVGAQYGAISALSINNDCSRLLCGFAKGQITMWDLASGKLLRSITDAHP
PGTAILHIKFTDDPTLAICNDSGGSVFELSFKRVMGVRTCESRCLFSGSKGEVCCIEPLH
AKTELRDHPITQYSLLAMASLTKILVIGLKPSLKVWMTFPYGRMDPSSVPLLAWYFVAVQ
NSVNPMLAFCRGDVVHFLLVKRDDSGAIHVTKQKQLHLHYDLINFTWINSRTVVLLDSVE
KLHVIDRQMQEELETIEISEVQLVYNSSHFKSLATGGNVSQALALVGEKACYQSISSCGG
QIFYLGTKSVHVMMIRSWRERVDHLLKQDCLTEALALAWSFHEGKAKAVVGLSGDGNKRK
AVIADRMVEILFHYADRTLKKCPDQGKIQVMEQHFQDMVPVIVDYCLLLQRTDLLFSQMY
DKLSENSVAKGVFLECLEPYILSDKLMGMTAQVMKDLLLHYQDKNLMEDMEACIVHMDIT
SLDIQQVVLLCWENHLYDAMIYVYNSGMNDFISPMEKLFKVIAPPLNAGKSLTDEKVVMG
NKLLVYIRIHSHLFHDSALSWVTMCVLPFLGIKVPLDKWAQGVFLFTALPVPLHQQRVFE
FLIRLHSAEASADEEVYPYVRTLLHFDTREFLNVLALTFEDFKNDKQAVEYQQRIVDILL
KVMVENSDFTPSQVGCLFTFLARQLAKPNNTLFVNRTLFDQVLEFLCSPDDDSRHSERQQ
VLLELLQAGGIVQFEENRLIPMAEKAEFYQICEFMYEQEHLYDKIIDCYLRDPVRKEEVF
NYIHNILSIPGYSAEEKQSVWQKAMKHIEELLLLSPNKAADLIATHFNDQIEGIIKNLQD
QFLLFQFLRSLLDPRYVSKLDSLSLTAQNHNFLVKIHCCGLMYKCIQSKETGEILCRQTP
GFLPCVVIIIVLAFFGYLLLVQLNQFLICQLLSVKLQQLLSNGTVNYLNHGVISLFFINL
ESTELHLLKDIEDTLVKTIALCQRNSHSLNQQQREALWFPLLEAMMSPQKLSSSTVLSQY
SEPLKSLTMQVLNNMAAFIALPSILQRILQDPVYGRGKLGEIQGLVLGMLDTFNYEQTLL
ETTTNLLNHDLHWSLCNLRASITRGLNPKQDYCCICLQQYKRRQEMADEIIVFSCGHLYH
SLCLLSKECGIETKGQMRWTCYKCNSSNKGGKLSENFSELKKGNGASLAQSSSESLLDSQ
QIQAFDQLCRLYRGTSRLALLTELSRTRGGEKHGLLNVSQGDPALNSVFQNENFQLHLAP
PPLTEE
NT seq
4341 nt
NT seq
+upstream
nt +downstream
nt
atggagcctgagagcctcggcgcggagcagggcgcctctctcccggggcccgccgaggag
ctggggacgctgctgggccaggatgccgcgctgcagaagctgagcggtgaggagctggac
agggagctggagtccaaaagtgacctgatagatgacaaagagtttgatattccccaggtt
gatacccctccaacactggaaagcatattaaatgagactgatgatgaagaagagtctttc
attcttgaggatccctctcttttaaacattgataacattgacactcactcttatgacaca
tcttccttggcaagctcagacagtggggacaggacgcacttgaaaagaaagaaaaagctc
cctgattctttctctcttcatggatcggttgtccgtctttctcttctgaaaggaatttct
gcccaaatagtatctgctgcggacaaagtggatgctggtttacctactgcaatagcagcg
tcaagtctgatagcagtggggacttcccatggtttggcattaatttttggaaaagatcca
aaccaggctcttcggctctgtctgggcagcactgctgttggggcccagtatggggctatc
tcggctctcagtatcaacaatgactgttcaagactactgtgtggctttgcaaaaggacag
attaccatgtgggatctggctagtgggaaacttttaagatcaataacagatgctcatccc
ccaggaacagcaattttacacatcaagtttacagatgacccaacgcttgcaatttgcaac
gacagtggaggttctgtgtttgagctgtcatttaaaagagttatgggtgtgagaacatgt
gagtctcggtgtctgttcagtggttccaagggagaagtttgctgtatcgagcccttgcat
gcaaagactgaattgagagatcatcctatcacccagtactcgctactggcaatggcttcc
ctaactaagatcctagtcattggcttgaaaccatctttgaaggtgtggatgacttttccg
tatggtcgtatggatccctctagtgtgccactgctggcatggtattttgttgctgtacag
aactctgtgaaccccatgcttgccttctgtcgaggagatgttgttcattttcttttggtg
aagagagatgactccggtgcaatacatgttactaagcaaaagcaacttcatctgcactat
gacctcatcaattttacttggataaactcacgcacagtagtgcttctggacagtgtggag
aagctgcacgtgatagatcgccagatgcaggaggagctggagactatagagatttcagag
gtgcagctagtatataacagcagtcacttcaaatcactggccacaggaggcaatgtcagc
caagcattggccctggttggagagaaagcatgttaccagtccatcagcagctgtggtggt
caaatcttctatcttggcacaaagtctgttcatgtgatgatgataaggagctggagagag
agagtggatcaccttttgaaacaagactgtcttactgaggccctggctctagcatggtct
tttcatgaaggtaaagcaaaggctgtagtagggttgtctggggatggcaataagcgaaag
gctgtcattgcagaccgaatggttgaaatcctcttccattatgctgatagaactttgaag
aaatgtcctgaccagggaaaaatccaagttatggagcaacactttcaggatatggtgcct
gtcatagtcgattactgccttttacttcagcgaactgaccttctgttcagccagatgtat
gacaaattgagtgagaattcagtggcaaagggtgtttttctggagtgcctggagccttac
attttaagtgataagttgatgggaatgaccgctcaagtgatgaaagacttgctgcttcac
taccaagataagaacctaatggaggacatggaggcctgcattgtgcatatggatatcacc
agcctagacatacagcaggtagttctcctgtgctgggaaaatcatctgtatgatgccatg
atctatgtgtacaacagtggaatgaatgacttcattagtccgatggagaaattgttcaaa
gtcattgctcctccacttaatgctgggaagtctctcacagatgagaaggtggttatggga
aacaagctccttgtgtacataaggatccacagccacctctttcatgactcagccctcagc
tgggtcaccatgtgtgttctccccttcctgggtatcaaagtccctcttgacaaatgggct
cagggagtcttcctgttcactgccctgccagtgccactccatcagcagcgagtgtttgaa
tttcttatccgtctccactcagctgaagcatctgcagatgaagaagtctacccgtatgtt
cgtacgctgctgcactttgataccagagagttccttaacgttcttgcactgacttttgaa
gactttaagaatgacaagcaagcagtggagtatcaacaaagaattgtggacatcctgcta
aaggttatggtggaaaattctgatttcaccccatcacaagttggctgtctttttaccttt
cttgcccggcagctggctaagcccaacaatacactgtttgtaaacaggacgctttttgac
caggtccttgaatttctgtgcagccctgatgacgattcccgacactcagagagacagcag
gtccttttagaactactgcaagctggagggatagtacagtttgaagagaatcgtctcatc
cctatggcagaaaaagctgaattctaccaaatttgtgagtttatgtatgaacaggagcat
ctctatgacaaaatcattgattgttacttacgtgatccagtgagaaaggaagaagtgttc
aactacatccacaatatcctatccattcctgggtacagtgccgaggagaagcagtcagta
tggcagaaggctatgaaacacattgaggagctgctgttactgagcccgaataaagcagca
gacctgatagcaactcacttcaatgaccagattgagggtatcattaaaaatcttcaggac
caattcttgcttttccagtttttgagaagtcttcttgacccaaggtatgtaagtaaattg
gatagtttatcacttactgctcaaaatcataactttttagttaaaatacactgctgtgga
ctcatgtataaatgcatacaatccaaagaaacgggagagattctttgtcgtcagactcct
ggcttcctgccctgtgtcgtcatcatcatcgtccttgctttcttcggatatctcttgttg
gtccagctcaatcagttcctcatttgtcagttgctgagcgtgaaactccaacaactcctc
agtaatggcacggtaaattatctgaaccatggtgtaatctctttgtttttcattaaccta
gaatcaacagaactccacttattaaaggatattgaagataccttggtgaaaacaattgca
ctttgccagaggaattcacatagtttaaaccagcagcagcgagaggcactctggtttcct
ctcctggaggctatgatgtcgccacagaagctatccagttcgacagtgttgtctcagtat
tctgaacctctgaagagtttgacaatgcaagtgctaaacaacatggctgcatttattgcc
cttccctcaatcttgcagagaattctccaggatccagtttatggtagagggaaacttgga
gaaattcagggacttgtactggggatgctggacacatttaactatgagcaaacccttcta
gagacaactaccaacctcctgaaccatgatctccactggtccttgtgtaacttgagagcc
tccatcactagaggacttaacccaaagcaggattactgctgtatctgtctgcagcaatac
aagagaaggcaagagatggctgatgaaatcattgttttcagttgtggccatttgtaccac
tcactctgtctgctgagtaaagagtgtggcatagaaaccaagggacagatgagatggact
tgctataaatgcaactcgagtaacaaaggggggaaactgagtgagaatttctcagaactg
aaaaagggaaatggtgcatctctggcacagtcaagttcagagtccctgttggattcccag
caaatccaggcttttgaccaactctgtcgactctatcgaggaacctccaggttagctctc
ctgacagaattgtctcgaactcgtggtggtgaaaaacatgggctcctcaatgtctctcag
ggtgaccctgcactgaacagtgtcttccagaacgagaatttccagctgcatctcgctccc
cctccactgacagaagagtag
DBGET
integrated database retrieval system
