KEGG   Trachemys scripta elegans (red-eared slider): 117883085
Entry
117883085         CDS       T07347                                 
Symbol
POLR2D
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB4
  KO
K03012  DNA-directed RNA polymerase II subunit RPB4
Organism
tst  Trachemys scripta elegans (red-eared slider)
Pathway
tst03020  RNA polymerase
tst03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:tst00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    117883085 (POLR2D)
  09124 Replication and repair
   03420 Nucleotide excision repair
    117883085 (POLR2D)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tst03021]
    117883085 (POLR2D)
   03400 DNA repair and recombination proteins [BR:tst03400]
    117883085 (POLR2D)
Transcription machinery [BR:tst03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     117883085 (POLR2D)
DNA repair and recombination proteins [BR:tst03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      117883085 (POLR2D)
SSDB
Motif
Pfam: RNA_pol_Rpb4 Tfb4 Maelstrom
Other DBs
NCBI-GeneID: 117883085
NCBI-ProteinID: XP_034637954
LinkDB
Position
9:complement(56760700..56767874)
AA seq 142 aa
MAAGGSEARVADVEEDASQLVFPKEFETAETLLNSEVHMLLEHRKQQNESAEDEQELSEV
FMKTLNYTARFSRFKNRETIASVRSLLLQKKLHKFELACLANLCPETAEEAKALIPSLEG
RFEDEELQQILDDIQTKRSFQY
NT seq 429 nt   +upstreamnt  +downstreamnt
atggcggccggaggcagcgaggcccgggtcgcggacgtggaggaggacgcctcgcagctc
gtcttccccaaagaatttgaaactgctgagacccttctaaattcagaagtgcacatgctt
cttgagcatcgtaaacaacagaatgagagtgctgaggatgagcaggagctctcggaagtc
ttcatgaaaactctgaactacacggctcgcttcagccgcttcaaaaaccgggagaccatt
gccagcgtccgcagtttgttgctccagaaaaagctccataaatttgaattggcgtgtttg
gctaatctgtgtcctgagacagctgaggaggccaaggctttgattcccagcttagagggc
cggtttgaagatgaggagctacagcagattcttgatgacattcagaccaaacgaagcttc
cagtattag

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