Trachemys scripta elegans (red-eared slider): 117883613
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Entry
117883613 CDS
T07347
Symbol
TNRC6A
Name
(RefSeq) trinucleotide repeat-containing gene 6A protein isoform X1
KO
K18412
trinucleotide repeat-containing gene 6 protein
Organism
tst
Trachemys scripta elegans (red-eared slider)
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tst03019
]
117883613 (TNRC6A)
03036 Chromosome and associated proteins [BR:
tst03036
]
117883613 (TNRC6A)
Messenger RNA biogenesis [BR:
tst03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
117883613 (TNRC6A)
Chromosome and associated proteins [BR:
tst03036
]
Eukaryotic type
Gene silencing
piRNA pathway
117883613 (TNRC6A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TNRC6-PABC_bdg
Ago_hook
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
117883613
NCBI-ProteinID:
XP_034638969
LinkDB
All DBs
Position
10:complement(1969434..2143345)
Genome browser
AA seq
2015 aa
AA seq
DB search
MEELSTHAQAHINRELRSEEKQVKEESSSFKCQEEAFYLLVQEDIEQELEAKATKEVERK
LSRDLVQEEEEQLMEERKKRKEDKKKKEAAQKKAIEQKIKVPEQTKTSVSQPPPVPSNGT
STATSTNNNAKRATASNQQQQQTLPRYPPREVPPRFRHQEQKQLLKRGQQLPVIAANLGS
TPKVLNSQSGGSAVTSKQPVTNGEVPNSSSKKQSGMPPIRDLVSHSPNQSDLNHSGLGSH
YENSHWGPVSSNNDSSTNWDKVIVDGSDKVAWPSITGSDPELASECMDTDSASSSGSERN
LVIMASGSTGGENDSVRNGIGHGSQNKFVVGSNSNNVGNGSINGPWGLSHGTIISTCQVS
VDAPDSKSESSNNRMNAWGTINSSSNGGLNPSTLNSNGNHGAWPVLENNGHALKGSVGSG
NSGTNIQCSTIGQKSNNQSINSKVGGSAHGSWASLQENCDSEVNGTRKVSFSGQPQNLNT
EMNGPNNTTNFMTSSLPNSAGSVQINKLPNNTGPGAWRVSTMNHSQIQASPVTNGTSTSH
LSNGEAKNGGSYGTTWVAYGSNYSGDKCSGPNSQANGDTVNATLTQPGSSGPGSTNFQIN
GNKGGGVWEGGTVNSQTMPWGSANGASSGGSRRGWGNPAQNTGTSISNGEWNKLPSNPHS
NESVNGNRRKFTNGWKSAEEDDLNSQNSAASQITEQNNVWAKTGTGDSEGSTESTGGHDD
KVTAEGQNRERRKVDQHALLQSIVSRTDLDPRVLSNSGWGQTPIKQNTAWDTETSPRGER
KTDNGTEAWGGSVTQTSSSGGCVERPSPNANDTSSISGWGDPKSATRWGDSKGSNSQGGW
EEDSAATVMVKSNQIWVSGKEDKSSWNDTQKIKQGWADGQKASQGWAISANDSWGENSRS
NHWGEAKKSSSGGSDSDRSVSGWNESKSNSVTWGSSNTNPNPSSGWDEPAKSNQSQGWGE
TPKSNQPQGWGDSSKPVNSPDWNKQQDVGSWGAPSTTNKPPGAGWLGGPIPSPAKEEEPT
GWEEPSPESIRRKMEIDDGTSAWGDPSKYNYKNVNMWNKNVPNSSSSSDQQAQVHQQLLP
SSAMSNKESSNGSGWGEPSTPATTVDNGTSAWGKPLDTGTSWGEPISDAAGTSGWGNASV
GQQASSKPDYGRISGPKSMQDGWCGDDMSLPGSRQTSWEEDDEVEIGMWNSSSSQEVNPS
LNWPPYMKKMPTKGTMKGGNKQDETWINPFIKQFTNLSFSVSMRESPEETIPSNKMDMSG
GILQEKRIELDKHGLNVGDYNRVVGKGPGSRPQISKESSMDRSPYFDKDGIVADESQNMQ
FISNQNMKLPPSNSALPNQALGSLAGLGMQNLNSVRQNGNPSVFGVGNIAAQPRSMQQPP
AQPLNSSQPNSRAQVPPPLLSPQVPVSLLKYAPNNGGLSPLFGPQQVAMLNQLSQLNQLS
QISQLQRLLAQQQKAQNQRSMPSTGRQQQEQQGRSLSMQQQMMQQSRQLDPNLLMKQQTP
PSQQQPLHQPAMKSFLENVIPHATPELQKGPSPINAFSSFPIGKKFASQTHTISKGFYPI
STSEIPGMNSNLNVNMDMSSIKEPQSRLRKWTTVDSISVNTSLDQNSSKHGAISSGFRLE
DSPFVPYDFMNSSNSPASPPGSVGDGWPRAKSPNGSSSVNWPPEFRPGEPWKGYPNIDPE
TDPYVTPGSVINNLSINTVREVDHLRDRNSGSSSSLNTALPSTSAWSSIRASNYNVSLSS
TAQSTSVARNSDSKSTWSPGSVTNTSLAHELWKVPLPPKSITAPSRPPPGLTGQKSPLST
WDNSLRLGGGWGNSDARYTPGSSWGESSSGRITNWLVLKNLTPQIDGSTLRTLCMQHGPL
ITFHLNLPHGNALVRYSSKEEVVKAQKSLHMCVLGNTTILAEFASEEEISRFFAQGQSLT
PSPGWQSFGSSQNRLGSIDGSHSFSNRNDLNHWNGAGLSGTSSGDLHGTSLWGSPNYSTS
LWGTPSSSDTRGISSPSPINAFLSVDHLGGGGESM
NT seq
6048 nt
NT seq
+upstream
nt +downstream
nt
atggaagagctgtcaacccatgcccaggcacatataaacagggagctcagaagtgaagag
aaacaggtcaaagaagagtcatcctcctttaagtgccaagaagaggccttctaccttctg
gtgcaagaagacattgaacaagaattggaagctaaagctaccaaagaagttgaaagaaaa
ctaagcagggatttagtgcaagaagaggaagaacagttgatggaagaaaggaaaaagaga
aaagaagacaagaaaaagaaggaagctgctcaaaaaaaggccattgaacaaaaaatcaaa
gtgccagaacaaacaaagaccagcgtaagccagcctccgcccgtcccctctaacggcact
tccacagcaaccagcactaataataatgccaagcgggccacagccagcaatcagcagcag
cagcagaccttgcctcgataccctcctcgtgaagtaccaccacgatttcgacaccaggaa
cagaaacagcttttgaagcgaggtcagcagttaccagtgatagctgcaaacctgggatcc
actcctaaagtattaaacagccaatcaggaggcagcgctgtcacaagtaaacagccagtg
accaacggagaagtgccgaacagcagcagcaaaaaacagtcaggcatgcctcccattcgg
gacttggtcagccattcccctaaccagtcagatctgaaccacagtggtctaggatcccat
tatgaaaattctcactggggacctgtctcttcaaataatgactccagcacaaactgggat
aaagttatcgtagacggttctgacaaagtagcatggccatcaatcacaggcagtgaccca
gagttggcttcagaatgtatggacactgactccgcctctagctctgggtcagagagaaat
cttgttattatggcttcagggagcacaggtggtgaaaacgatagcgttcggaatggcatt
ggacatggttctcaaaataagtttgtggttggtagcaacagcaataatgtgggcaatgga
agtattaatgggccatggggtttatcccatggaaccataataagcacatgtcaagtttct
gtggatgctcctgacagcaaatctgaaagtagcaacaatagaatgaatgcttggggcacc
ataaactcttcatcaaatggagggttaaatccaagcactttgaattcaaatggcaaccat
ggtgcctggcctgtattggagaacaatggacatgccctgaaagggtctgtagggagtggt
aattctggcacaaatattcagtgcagtaccataggtcagaagtctaacaatcagagtatt
aactctaaagtgggtggttcagcccatggttcctgggcaagccttcaggaaaattgtgat
tctgaagtgaatggtacaaggaaggtttcattcagtggacaacctcaaaaccttaacact
gaaatgaatggaccaaataacactactaactttatgacctctagtttaccaaactctgct
ggttcagtacagattaacaaactgcctaataatacagggcctggggcctggcgtgtgagc
acaatgaatcattctcagattcaggcctctccagttacaaatggcacttccacttctcat
cttagcaatggtgaggcaaaaaatggtggatcttatggtactacgtgggttgcctatggt
tctaattactctggagacaaatgttcaggcccaaacagccaagctaatggtgacactgtg
aatgcaactctaacgcagcctggcagcagtgggcctggcagcactaattttcaaatcaat
gggaataaaggaggaggggtctgggagggagggacagtcaactcccaaactatgccatgg
ggaagcgcaaatggtgcgagttctggaggaagtcgaagaggatggggcaaccctgcacaa
aacactggcactagcatttcaaatggggaatggaataaactgcctagcaatccgcattcc
aatgaaagcgtaaatggaaatcgtaggaagtttacaaatggatggaaatctgctgaagag
gatgatcttaatagccagaattctgctgcatctcagataactgagcagaacaatgtatgg
gccaaaacaggtactggggatagcgagggtagtacagagagcactggaggccatgatgat
aaagtaactgcagaaggacagaaccgggagagaagaaaagttgaccagcatgcattactc
caaagtatagtgagcagaactgacttagatccacgtgtcctttccaactctggttgggga
cagactccaattaaacaaaacactgcctgggatactgaaacatcgccaagaggtgaaaga
aagactgacaatgggacagaggcctggggaggctctgtgacacagacttccagctcaggg
ggatgtgtggagagacctagccctaatgctaatgatacctcatctatatcagggtgggga
gatccaaagtctgctacaaggtggggagactccaaaggctccaacagccaaggggggtgg
gaagaggattctgctgctacagtaatggtcaagagcaatcaaatatgggtaagtggcaaa
gaggacaagtcgtcctggaatgatacacagaagatcaaacagggatgggcagatggacaa
aaagccagccaaggttgggcaatttctgccaacgacagctggggagaaaattcaagaagc
aaccattggggtgaggctaagaaatctagttcaggaggtagtgacagtgacagatcggta
tctggttggaatgagtctaaatcaaattctgtcacttggggaagtagtaatacaaaccca
aatccatcttcaggatgggatgagcctgcaaaatctaatcagagccagggctggggagaa
actcccaaatcaaatcagcctcaaggttggggtgattcgtcaaagccagtcaactcccca
gactggaacaagcagcaagatgttggctcttggggagcaccatctaccacaaataaacca
ccaggtgccgggtggttgggtggaccaataccaagtccagcaaaggaagaggaacccaca
ggatgggaggagccatccccagaatcaatacgccgtaaaatggaaattgatgatggaact
tctgcttggggtgatccaagcaaatacaactacaaaaatgtgaatatgtggaataaaaat
gtcccaaacagtagcagcagttcagaccagcaagcacaggtacatcagcagctactgcct
tcaagtgccatgtccaacaaggagagcagtaatggttctggttggggagagccttctact
cctgccactactgtagataatggaacgtccgcgtggggtaaacccctggatactggtact
agctggggagagcccatcagtgatgcagcaggcacctctggctggggaaatgcttctgtt
ggtcagcaggcttcaagtaaacctgattatggcagaatatcagggcctaaatctatgcaa
gatggttggtgcggtgatgatatgtcattgccagggagtcggcagaccagctgggaggaa
gatgatgaagtagagattggaatgtggaatagcagttcctcccaagaagttaacccatct
ttgaattggccaccatacatgaaaaaaatgcctacaaagggaacaatgaaaggtggaaat
aaacaagatgaaacatggataaatccattcattaagcaattcacaaatctcagtttttca
gtaagtatgagagaatcaccagaagaaaccataccgagcaataagatggacatgtctgga
ggaatattacaggagaaacgaatagagttggataagcatggcctgaacgttggagattac
aatcgggtggtaggaaagggccctggttctcgtcctcagatttccaaagagtcttccatg
gatcgcagtccttattttgataaggatggcattgtagcagacgagtcccaaaacatgcag
tttatttccaatcaaaacatgaagcttcccccttcaaatagtgcactacctaaccaagcc
cttggctccctagcagggctgggtatgcaaaacttgaattctgttagacagaatggcaat
cccagtgtgtttggcgttggtaatatagcagcacagcccaggagcatgcagcagccccca
gcacaacctcttaattcatcccagcctaactcacgtgctcaagtgcctcctccgttactc
tcccctcaggttccagtatcattactgaagtatgcaccaaacaatggtggcctgagtcca
ctttttggcccacagcaggtagccatgttgaaccaactatcccagttgaaccagctttct
cagatctcccagttacaacggttgttggctcagcagcaaaaagcgcagaatcagagaagc
atgccttctactggtcgtcaacagcaggaacagcagggtcgatctcttagtatgcagcaa
cagatgatgcaacagtcccgtcagcttgatccaaacctgttaatgaagcagcagactcca
ccatctcaacagcagccactccatcagcctgccatgaaatctttccttgagaatgtcata
ccccatgctactcctgagctgcagaaagggccatcaccgataaatgcattcagcagcttc
cctataggaaagaagttcgccagtcaaactcataccatttccaaaggcttttatcccatt
tccacttcagaaattccaggaatgaactcaaacttgaatgtaaacatggatatgagcagt
attaaggagccgcaatcacgactgaggaaatggacaacggtggacagcatttctgttaac
acctcattggatcaaaactccagcaaacatggtgctatttcaagtggttttaggctggaa
gattccccatttgttccatacgactttatgaacagcagtaattcaccagccagtcctcca
ggatctgttggggatggctggccacgtgccaaatcgcctaatggctctagcagtgttaac
tggccaccagagtttcgtcctggtgagccatggaaaggttatccaaacatcgaccctgaa
actgacccttacgtcactcctggcagtgtcataaacaatctttcaattaatactgtgcgg
gaagttgaccacctcagggacaggaacagtgggtcatcctcatctttgaacaccgcgctg
ccttcaactagtgcctggtcatccattcgtgcctccaactacaatgtttccctcagcagt
acagcacaaagcacttcagtagccagaaacagtgattccaaatcaacgtggtctcctggt
tcagtcactaacacctctctggctcatgagctgtggaaggtccctttgccacctaaaagc
atcactgctccgtcccgcccgccaccagggctgacaggccagaaatcacctttgtccaca
tgggataactcccttcgtttgggtggaggatggggaaattctgatgccagatatacccct
ggttcaagctggggtgagagcagctcagggagaataacgaattggcttgttctaaaaaac
cttacacctcagattgatggctcaaccctgcgtactctgtgcatgcagcacggtccacta
ataacattccaccttaacctcccacatggtaatgctttggtccgttacagttcaaaagaa
gaggtagtgaaggcacaaaaatctctgcacatgtgtgtattagggaacactactattctg
gctgagtttgccagtgaagaggagattagccgcttctttgcacaaggccagtctctgact
ccttctcctggctggcagtcttttggatccagccagaaccgacttggatccattgatggt
tcccattcgttctcaaaccgtaatgatctaaatcactggaatggtgctgggctgtcggga
actagcagtggagaccttcatggcacttcactttgggggagccccaactattccacaagc
ctgtggggtaccccaagcagcagtgacaccaggggaattagcagcccatcccccatcaat
gctttcctttctgttgaccacctaggtggaggtggagagtccatgtaa
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