Trachemys scripta elegans (red-eared slider): 117883828
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Entry
117883828 CDS
T07347
Symbol
SAMM50
Name
(RefSeq) sorting and assembly machinery component 50 homolog
KO
K07277
outer membrane protein insertion porin family
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst04137
Mitophagy - animal
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
117883828 (SAMM50)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03029 Mitochondrial biogenesis [BR:
tst03029
]
117883828 (SAMM50)
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
tst02000
]
117883828 (SAMM50)
Mitochondrial biogenesis [BR:
tst03029
]
Mitochondrial protein import machinery
Outer membrane
TOB/SAM complex
117883828 (SAMM50)
Transporters [BR:
tst02000
]
Other transporters
Pores ion channels [TC:
1
]
117883828 (SAMM50)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Omp85
FLQE3_permease
POTRA
Motif
Other DBs
NCBI-GeneID:
117883828
NCBI-ProteinID:
XP_034639517
LinkDB
All DBs
Position
1:120808515..120846367
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AA seq
469 aa
AA seq
DB search
MGTVHARSLEPLPVSGSDFGALGDEPELVEVEPEAKQEVLENKDVVVQHVHFDGLGRTKD
DIIMYEIGDLFKAKNLIDVMRKSHEAREKLLRLGIFRQVEVLIDTCQGDDALPNGLDVTF
EVTELRRLTGSYNTMVGNNEGSMVLGLKLPNLFGRAEKVTFQFSYGTKETSYGLSFFKPQ
PGNFERNFSVNLYKVTGQFPWSSLRETDRGISTELNFPIWKTNHTLKWEGVWRELGSLAR
TASFSVREESGHSLKSSLSHAMVIDSRNSSILPRRGALLKINQELAGYSGGDVAFLKEDF
ELQLNKQLLWDSVFSATLWGGMLVPIGDKPSSIADRFYLGGPTSVRGFSMYSIGPQSEGD
YLGGEAYWAGGLHLYTPLPFRPGRGGFGDLFRTHFFLNAGNLCNLNYGDGPKAHLRKLAE
FIRWSYGAGIVLRLGNIARLELNYCIPMGVQSSDRICDGVQFGAGIRFL
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
atggggacggtgcacgcgcggagtctggagcctcttccagtgagtgggtctgactttggt
gctttaggagatgaacctgaactagttgaagttgaacctgaagccaagcaggaagtcctt
gaaaacaaagatgtggtggtccaacatgtacactttgatggacttggaaggactaaagat
gacattatcatgtacgaaattggtgaccttttcaaggctaaaaacctcattgatgtaatg
agaaaatcacatgaagctcgtgaaaagttgctccgtctaggaatttttaggcaggtggaa
gttctgattgatacatgtcaaggagatgatgcccttccaaatggtttagatgtaacattt
gaagtaacagaactgagaagactaactggaagctataacactatggttggcaataatgaa
ggcagtatggttcttgggctcaaactccctaatctctttggacgtgctgagaaggtgacc
ttccagttttcctatggaacaaaggaaacttcatatggcctatcattcttcaaaccacag
cctggaaactttgaaagaaatttttcagttaacctgtataaagtaactggacagttccct
tggagctcccttcgtgagactgacaggggaatatcgacagaattaaattttcccatatgg
aagaccaatcacacactgaaatgggaaggtgtttggagagagcttggctctcttgcaaga
acagcctccttttctgttcgagaagaaagtggacactctcttaaatcttctctctcacac
gccatggtaatcgattctcggaactcttcaatcttgcctagacgaggtgctttgctgaaa
attaatcaggagctagctggctactcaggtggagatgtggcctttctaaaagaggacttt
gagcttcagctgaataagcagcttttatgggattcagttttttcagcaactctctggggt
ggaatgttggttcctattggagataagccctccagtattgctgataggttttaccttggt
ggaccaacgagcgtgcgtggattcagtatgtacagcattggaccccaaagcgaaggtgat
taccttggaggagaagcctattgggctgggggcctgcacttgtacacacctctccctttt
cggccaggtcgtgggggatttggagacctctttagaacacacttctttctcaatgctgga
aacctctgcaatcttaactatggtgacggtcccaaagctcatctccggaagctggctgag
ttcatccgatggtcttatggtgctggaatagtgctcagacttggaaacattgctagatta
gaacttaactactgtatccctatgggagtacaaagtagtgacaggatatgtgatggtgtc
cagtttggagctggaataagattcctgtaa
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integrated database retrieval system
