Trachemys scripta elegans (red-eared slider): 117884162
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Entry
117884162 CDS
T07347
Symbol
ERCC4
Name
(RefSeq) DNA repair endonuclease XPF isoform X1
KO
K10848
DNA excision repair protein ERCC-4 [EC:3.1.-.-]
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst03420
Nucleotide excision repair
tst03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
117884162 (ERCC4)
03460 Fanconi anemia pathway
117884162 (ERCC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tst03032
]
117884162 (ERCC4)
03400 DNA repair and recombination proteins [BR:
tst03400
]
117884162 (ERCC4)
DNA replication proteins [BR:
tst03032
]
Eukaryotic type
DNA Replication Termination Factors
Other termination factors
117884162 (ERCC4)
DNA repair and recombination proteins [BR:
tst03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
Other NER factors
117884162 (ERCC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC4
DUF4110
AmiA-like
Motif
Other DBs
NCBI-GeneID:
117884162
NCBI-ProteinID:
XP_034640219
LinkDB
All DBs
Position
10:21517756..21542592
Genome browser
AA seq
902 aa
AA seq
DB search
MAAPLEHENQVFLDLFHQDGLVICARGLGIDRILLRFLRLYCEPASLVLVLNTSAAEEEY
FIDQLRSDGVVHLPRRVTNEITSNCRYEVYTQGGVLFATSRILVVDFLTDRIPSDLITGI
LVYKAHRIIESCQEAFILRLFRQKNKKGFIKAFTDNAIAFNTGFCHVERVMRNLFVRKLY
LWPRFHIAVNTFLEKHKPEVVEIHVSMTPAMLTIQTSILDILNVCLRELKRYNPALEVED
LSLENAIGKPFDKTIRHYLDPLWHQLGAKTKSLVQDLKILRTLLQYLTQYDCVTFLNLVE
SLRATEKAFGQNSGWLFLDSSTSMFVNARARVYRISDDKISQKSKVSEKMDIKEEKELKR
ELVLESNPKWEALREVLKEIEFENNNSEALGGPGQVLICASDDRTCAQLREYVIAGAEAL
LMRLYNKTFGKDERAGEAWIKDRKAVKSKGNARSDKGPQAKKAKVEASSKQNKIMKKQDL
TLTQMMGKTEEENIREEMEGYKELSSSEEISIEETKPEDFHLNLASDAYYGIFKTPLTII
HPLQGCSDPYALTRVLHEVEPRYVVLYDAELTFVRQLEIYKASRPGKPLRVYFLIYGGST
EEQRYLTVLRKEKEAFEKLIREKASMVIPEEREGRDETNLDLVRDSTSATVSTDTRKAGG
QEQKSVQQTIIVDMREFRSELPSLIHRRGIDIEPVTLEVGDYILTPDICIERKSISDLIG
SLNNGRLYSQCISMSRYYKRPILLIEFDPSKSFSLTSRGSLHQEISSNDVTSKLTLLTLH
FPRLRILWCPSPHATAELFEELKQNRPQPDAAIAMAITADSEIVPESDKYNPGPQDFLLK
IPGVNAKNCRVLMSHVKSISELVTLSQDKLSEILGNAVNAKQLYDFIHISYAEAISQAKT
KR
NT seq
2709 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgccgctggagcacgagaaccaggttttcctggatctcttccaccaagacggg
ctggtcatctgcgcccgcggcctgggcatcgaccgcatcctgctgcgcttcctccgcctc
tactgcgagccggccagcctggtgctagtgctcaacaccagcgcggccgaggaggagtat
tttattgatcagctgaggtcagatggagttgttcatcttcctcggcgtgttaccaatgaa
attacaagcaactgtagatatgaagtttacacacaaggtggtgtcctcttcgcaacaagt
cgaattcttgtggtggatttcctgacagatagaattccttcagatcttataactggcatt
ttggtatacaaagcacacagaatcattgagtcttgtcaggaagcatttatcttgcgactc
tttcgccagaagaacaagaaagggttcatcaaagcttttacagacaatgccattgccttt
aatactggcttttgtcatgtggaaagagtgatgagaaatctctttgtacggaaactttat
ctttggccaaggtttcatatagcagtgaatacatttttagagaaacacaaacctgaagtg
gtggaaatacatgtatccatgacccctgccatgctcaccatccagacctctatactggac
atcctgaatgtgtgtctgagagaactcaaacgctataacccagctcttgaagtagaagac
ttatcattagaaaatgctattggaaaaccttttgacaagacaattcgtcactatttagat
cctctttggcaccaacttggagctaagacaaaatctttggttcaggatttgaagatatta
cgtactttgctacagtatctaactcagtatgattgtgtcacttttcttaaccttgtggag
tcattgagagcaactgaaaaagcatttggtcagaattcagggtggctatttcttgattcg
agtacttcaatgtttgtaaatgctcgagcgagagtttatcgcatttcagatgacaaaata
agtcagaaaagcaaagtatctgaaaaaatggatataaaagaggaaaaagaactgaaaagg
gaactggtcttagaaagcaacccaaagtgggaggccttaagagaagtattgaaagaaatt
gaatttgagaacaataacagtgaggctcttggcgggccagggcaagttcttatttgtgcc
agtgatgaccgaacttgtgcacaactgagagagtatgttattgctggagcagaggcactt
ttaatgaggctctataacaaaacttttggaaaggatgaaagagctggagaagcatggatt
aaggatagaaaagctgtcaagtccaaaggaaatgccagatcggacaaaggacctcaagcg
aaaaaagccaaagtagaggcctcctcaaaacaaaacaaaatcatgaagaaacaagacttg
actctaacccaaatgatgggaaaaacagaggaggaaaacataagagaggagatggagggc
tataaggaattaagcagcagcgaagaaatcagtatagaggaaaccaaacctgaagatttc
catctaaacttagcatcagatgcttattatggtatcttcaaaacccccctaactattatt
catccattgcagggttgtagtgacccctatgctctcactcgcgtattgcatgaagtggaa
ccaagatatgtagtgctatatgatgcagaactaacttttgttcggcagctggaaatctac
aaggcaagcaggcctgggaagcccttgagggtttatttccttatatatggaggttcgaca
gaagaacagcgctatctcactgtgctgagaaaagaaaaagaagcttttgaaaaactcatt
cgagagaaggccagcatggttatccctgaggaaagagaaggcagagatgaaacaaacttg
gatctcgtaagagattctacttctgcaactgtttctactgacacacgcaaagcaggtgga
caggaacagaagagcgttcaacaaactataatagtggatatgcgagaatttcgcagtgag
cttccatctctgattcatcgtcgtggcattgacattgaacctgttactttggaagttgga
gattacattctcacccctgatatctgcatagagcggaagagtatcagcgatttgatcggt
tccttaaataatgggaggctctattcccaatgcatttctatgtctcgttattataagcga
ccaattcttctgattgaattcgaccctagcaaatctttctctctcacttcacgaggctct
ctacatcaagagatttccagtaacgatgttacttctaaactcacgcttcttactcttcat
ttcccaaggttacgtattctgtggtgtccgtctccccatgccactgctgagttgtttgag
gagttgaaacagaacaggccacagcctgatgcagcaatagcaatggccattacagcagat
tctgaaatcgttcctgagtcagacaagtataaccctggcccacaggacttcttattaaaa
ataccaggtgtaaatgccaaaaattgccgtgtcttaatgagccacgttaagagcatttca
gagctggtaactctgtcacaggacaaactctcggaaattctgggcaatgctgtcaatgct
aagcagctttatgacttcattcacatatcctatgcagaggccatttctcaagcgaaaacc
aaaagatga
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