Trachemys scripta elegans (red-eared slider): 117884193
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Entry
117884193 CDS
T07347
Symbol
LINGO1
Name
(RefSeq) leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1 isoform X1
KO
K23533
leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein
Organism
tst
Trachemys scripta elegans (red-eared slider)
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tst04131
]
117884193 (LINGO1)
Membrane trafficking [BR:
tst04131
]
Endocytosis
Lipid raft mediated endocytosis
RhoA-dependent endocytosis
117884193 (LINGO1)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_5
LRR_4
I-set
Ig_3
ig
Ig_2
LRR_9
LRRNT
V-set
Motif
Other DBs
NCBI-GeneID:
117884193
NCBI-ProteinID:
XP_034640275
LinkDB
All DBs
Position
10:48671508..49138724
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AA seq
619 aa
AA seq
DB search
MQVRDRMIAGEVSMHSPILACWQPILLLMLGSVLSGSATGCPPRCECSAQERSVLCHRKR
FFAVPEGIPTETRLLDLGKNRIKTLNQDEFANYPHVEELELNENIISAIEPGAFNNLFNL
RTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVY
ISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFRRLYRL
KVLEISHWPYLDTMTSNCLYGLNLTSLSITHCNLTSIPYVSVRHLVYLRFLNLSYNPILT
IEGSMLHDLLRLQEIQLVGGQLSIVEPYAFRGLNYLRILNVSGNLLTTLEESAFHSVGNL
ETLILDNNPLACDCRLLWVFRRRWRLNFNKQQPTCSTPEFVQGKEFKDFPDVLLPNYFTC
RRARIRDRKPQQIFVDEGHTVHFVCRADGDPPPTIMWLSPRKHLISTKTNGRLTVFPDGT
LEVRYAQIQDNGTYLCIASNAGGNDTMLAHLHVRSYSPDWPHQPNKTFAFISNQPNESDA
NSTRATVPFPFDIKTLIIATTMGFISFLGVVLFCLVLLFLWSRGKGNTKHNIEIEYVPRK
SDAGISSADAPRKFNMKMI
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
atgcaggtgagagataggatgatagctggggaggtgagcatgcatagcccaattctggcc
tgctggcagcctatcctccttctgatgctgggatccgtcctctctggctctgccacgggc
tgcccgccccgctgcgagtgctctgcccaggagcgctcagtgctgtgccatcgaaagcga
ttcttcgccgtccccgaggggatcccgactgagacccggctcctggacttgggtaagaac
cgaatcaagactctcaaccaggatgaatttgccaactaccctcacgtggaggagctggag
ttaaacgagaacattatcagtgccattgagcctggggctttcaacaacctcttcaacctc
aggactctgggtctcaggagtaaccgactcaagctcatccccttgggggtgtttaccgga
ctgagcaatcttaccaagctagacattagtgagaacaaaattgtgatcctcctagactac
atgttccaggacttgtacaacctgaagtctttggaggttggggacaatgacctggtctat
atctcccaccgggcctttagcggcctcaacagcttggagcagctgacgctggagaaatgc
aacttgacctccatccccacggaggcgctgtctcacttgcacggcttgattgtgctgagg
ctgcgccacctgaacatcaacgccatcagggattactcatttaggaggctctacaggctt
aaggttcttgagatctcccactggccctatctggataccatgacgtccaactgcctctat
ggactgaacctgacgtccttgtccatcacccactgcaatctgacttccatcccttacgtc
tctgtcagacacttagtttatctcaggttcctgaacctgtcctacaaccccatcctcacc
attgagggctccatgctgcatgacctgctccggctgcaggagatccagctggtgggtggg
cagctcagcatcgtggagccctacgccttcagaggcctcaactacttgcgcatcttgaac
gtctccggaaacctgctgaccacactggaggagtcagccttccactcggtggggaacctg
gagacgctcattttggataataaccctttggcctgcgactgccggctgctttgggttttc
cgacgccgctggaggttgaacttcaacaagcagcagcccacctgctccacccccgagttc
gtccaggggaaggagttcaaggacttccccgacgtgctcctgcccaactatttcacctgc
cgccgggcgcgcatacgggaccgcaagccgcagcagatctttgtggatgagggccatacg
gtacattttgtctgccgggcagatggggatccgccccccacgatcatgtggctctctccc
agaaagcacctcatctctaccaaaaccaacgggaggctcaccgtctttcccgacggcact
ctggaggtgcgctacgcccagatccaggacaatggcacctacctatgcatcgccagcaat
gcgggtggcaatgacaccatgctggcgcaccttcacgtgcggagctattccccagattgg
ccccaccagcccaacaagacctttgctttcatctccaaccaacccaacgagagcgacgcc
aacagcacgcgtgccaccgtgcctttccccttcgacatcaagactctgatcatcgccacc
accatgggattcatctccttcctgggcgtggtgctattctgtctggtgcttctcttcctg
tggagccgggggaaaggcaacacaaagcacaacatcgagatcgagtacgtgccacgcaag
tccgacgccggcatcagctctgctgatgcgccgcgcaagttcaacatgaaaatgatctaa
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