Trachemys scripta elegans (red-eared slider): 117884267
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Entry
117884267 CDS
T07347
Symbol
CIITA
Name
(RefSeq) MHC class II transactivator isoform X1
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
tst
Trachemys scripta elegans (red-eared slider)
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
tst01001
]
117884267 (CIITA)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
tst04054
]
117884267 (CIITA)
Enzymes [BR:
tst01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
117884267 (CIITA)
Protein kinases [BR:
tst01001
]
Serine/threonine kinases: Other
TAF1 family
117884267 (CIITA)
Pattern recognition receptors [BR:
tst04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
117884267 (CIITA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
NLRC4_HD2
LRR_4
LRR_6
LRR_14
NB-ARC
LRR_9
LRR_8
CARD
NPHP3_N
nSTAND_NTPase5
AAA_16
RsgA_GTPase
AAA_22
AAA_19
Motif
Other DBs
NCBI-GeneID:
117884267
NCBI-ProteinID:
XP_034640423
LinkDB
All DBs
Position
10:complement(23243637..23308055)
Genome browser
AA seq
1280 aa
AA seq
DB search
MNLFKEILPGVREILSSATTSDVHALLSCMLEKDVISKEYHQTLLQEKDREDLARKISLT
LVEKWDLCLNTLVPLRCLKLYTKMPQDITDNESSLNRGIAASKRQTMDSAVLTENSFLDL
LHSNIDPLHLYSLLDTRLSDEDEESELSTDPEIDTINHDQFSNLDVFYTMESNESVEESL
FSNTGEAYSRIAGLAEYVLKDQQERQMEDIFGKLILDEMSNETTEGFTEMKKQKCQKRSF
VSPAESYSDASKPKSRRTDAATRVKERVCTEGSRAVGDVRASCQKRVESPGSTVNGSFVA
VPLNSSPANSTSLSHLHMQFSVTSIHPTGKNVVMPVSSGNSNPDCLLVGAKGIQVISSFA
VLPQQIINLPVGNGASNIIIYPVSSSPTETLQISPVFPTTLAAQVDLAVQSILGPPDKNT
SIGPFAYMPETAAVTDLTDEEEMSNEISQIPVVPSEQILKRPKPVEAFCTSLKDYFQDVC
KFMAMDREVTLDHFYIDGALMQGQTETKSGKNVKVMEKELVIYNLEEKEKAAIERSQIFQ
VLGGKELETKVIVVLGKAGMGKSILVQKICQDWSNGKFSQFEFVFWFECRRLSLPEKQYS
LKDLLLELFVKPREGSDKVFEYILQNPNKVLLIFDGFEELQDHDGFTHCSDCQSYKELYS
IRELFAGLFQKKILSGCTLLLTARPKDKFNQYLSKVDKIIEMIGFSPQQVELYIARYFEG
LPYSDDAVKLITDCQYLFSHCYSPVMCRFICFLCEMMFEMGDKDLPPTLTSLFVKYLQQK
LTPTQTDATAVGNQQHITRLAWLAWHLGEKNQNALKSSLFPSKEVKEFALKYGLVLPFTF
PKHSGNGEEEFGSAFSDFVIQNFLSALHLLLAEDIKDKSLTKYLSLPARKKKPHNWLDLV
PRFLPGLLYLQHDPYLCSLSDEHVMKIITKKQKTLLKYIKKIQISDLYPEKLLELLHCVY
ETQDSYLLQHVALRLKAELSFLGTLLTPPDVYVLHFILKRSPKEFSLDLRNSGINLQGLK
HLVGLKNVTSFRASLSDTVRLWESLEQTKEYELLKISVEKFDIDPFKAETMKDIRDLSDL
VRIQEKMVHCMEEAFGCNINEIPAIKNLRKLEFALGPACGLQGFLKLVEILAAFPSLQHL
DLDALSENEIGDVGTKSLCEVLSALTSLETLNLSQNKITDLGAEQLATALPSLSSLKTLS
LYNNYICDAGAENIAKILPAMASLRVLHVQCNKITDAGAQKLTDSLRKCPHIKSVAMWNP
TIPYGVLEHLQQLDSRISLL
NT seq
3843 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttttcaaagagatccttcctggagtcagggaaattctctccagtgccacaact
tctgatgtccatgcattgctcagttgcatgttggagaaagatgttatatccaaggaatac
catcagaccttactccaggaaaaagacagagaagacctagcaaggaagatatctctaaca
cttgtggaaaaatgggacttgtgtttgaacaccttagttcctctccgttgtttaaaactg
tacactaagatgccacaagacatcacagataatgagtcatctctgaacaggggtatagct
gctagcaaaagacaaaccatggattcagcagttttgactgaaaatagctttcttgatttg
ctgcacagcaatattgatccattgcatctatacagcctcttggatacaaggttatctgat
gaagatgaagaaagtgaactttcaacagaccctgaaattgataccatcaaccatgatcag
ttcagcaatttggatgtcttttatacaatggaaagcaatgaaagtgtggaagaatctctc
ttttcaaatacaggggaagcttattctagaatagctggattagcagaatatgtgctcaaa
gatcagcaggagagacagatggaagacatttttggaaaactcattttggatgaaatgtcc
aatgaaactacagagggttttacagagatgaagaagcaaaaatgtcagaaacgatcattt
gtgagccctgcagagagttactctgatgcttccaagcccaaaagcaggagaacggatgca
gcaacgagggtaaaggaacgagtatgtacagaaggcagcagagctgttggggatgtaaga
gctagttgccagaaaagagtggagtcccccgggtctacagtgaatggcagttttgtagcg
gtgcctctgaacagctctccagctaactccacctctttgtctcacctgcacatgcagttt
tctgttaccagtatacatccgactggaaaaaatgttgtgatgcccgtgtcttctggaaat
tccaaccccgactgtctgcttgttggtgctaaagggatccaagtgatatccagctttgca
gttcttcctcagcagataattaatttgcctgtagggaatggtgcatccaatattattata
tatccagtgtcctcttcccccactgaaacattacagatatcaccagttttccccacaact
ctggctgctcaagtggacttggctgtccaaagcattttggggcctcctgacaaaaacacc
tccattggcccatttgcttatatgccagagactgcagctgtgactgatcttacagatgaa
gaagaaatgtccaatgagatatcacaaattcctgttgttccttctgaacaaattctcaaa
agaccaaagccagtggaagctttctgcacatcacttaaggattatttccaagatgtgtgc
aagttcatggccatggaccgtgaagtaacccttgatcacttttacattgatggggctctc
atgcaaggtcaaactgaaacaaagagtgggaaaaatgtcaaggtgatggagaaggagctg
gtaatatacaatttagaagagaaggaaaaagcagctatagaaagaagccaaatatttcaa
gtcctaggagggaaagaactagagaccaaagtcattgtggtgttgggaaaggcaggaatg
ggtaaaagcattcttgttcaaaagatctgccaagactggtccaatggaaagttttctcag
tttgaatttgtcttttggtttgagtgtagacgactgagcctgcctgagaagcaatacagc
ttgaaggacctgcttcttgagctgtttgtcaaacctcgagagggaagcgacaaagtcttc
gagtacatactgcaaaatcccaataaagtcctcctcatcttcgatggtttcgaagagttg
caggatcatgatggctttacacattgctcagactgccagtcttacaaggagctgtacagc
atcagggagctatttgcagggctcttccagaagaagatactcagtggctgtactttattg
ctaacagcaagacccaaggacaaatttaatcagtatttatccaaagtggacaagattatt
gaaatgatagggttctctccacagcaggtagaattatacatagccagatattttgaaggg
ctaccatacagtgatgacgcagtgaaattaatcacagattgtcaatatctgttcagtcac
tgctacagccctgtcatgtgtagattcatttgttttctctgtgaaatgatgtttgaaatg
ggagacaaagacctgcctccaacacttaccagcctctttgtaaaataccttcagcaaaag
ctgacacccacacaaacagatgcgacagccgtaggaaatcaacagcacattaccaggcta
gcttggctagcctggcatcttggagaaaagaatcaaaatgccctgaagagcagtcttttt
ccctctaaagaagttaaggagtttgctctgaaatatggcttagtactgccatttacgttc
ccaaaacattcgggaaatggggaggaagaatttgggagtgcgttctcagacttcgttatc
caaaattttttgagtgcacttcacctgttgctcgcagaagacatcaaggataaaagcctc
acaaagtatctttccctaccagccaggaagaaaaagcctcataattggttagacctggtg
cctcgattcttgcctgggttattgtacctccagcatgatccgtacctctgctctctttca
gatgagcatgtaatgaaaatcataaccaagaagcagaaaacgctcttaaaatatattaaa
aaaatacagataagtgatctctatccagaaaaactgcttgagctgctccactgtgtttat
gaaacacaggacagctatcttttgcagcatgtggctttaaggctgaaggctgaactttct
tttctgggcactcttcttacaccccctgatgtctatgtgttgcattttattttaaaaaga
tccccaaaggagttttccttggatttgcggaacagcggcattaacctacaagggctgaaa
cacctggttggactaaagaatgtgacatcattcagggcctcccttagtgatacagtcagg
ctgtgggagtccttagagcaaacaaaggaatatgagctgctgaagatttcagttgagaaa
tttgatattgatccctttaaggcagaaactatgaaggacatccgtgacctttctgacctt
gtacggatacaagagaaaatggtccactgcatggaagaggcgtttggctgcaatattaat
gaaattcctgctatcaaaaacctcagaaaactagaatttgcgctgggtccagcctgcggc
cttcagggattcttaaagcttgttgaaattcttgcagcatttccatctcttcagcactta
gacttggatgctctgagtgaaaatgaaataggagacgtaggaacaaaaagtctctgtgaa
gtattgtcggcgttgacttcactggaaacgttgaacttatcacagaacaagataacagat
ttgggtgcagagcaactagctactgctcttccttccttatcctcattaaagacacttagt
ttgtacaataactacatttgtgatgctggagcggaaaatattgcaaaaatacttcctgca
atggcatctttaagggtgctacatgttcagtgtaacaagataactgatgccggagcccag
aagctgactgatagcctcagaaaatgcccccacatcaagagtgtggcgatgtggaaccct
actattccctatggagttcttgagcaccttcaacagttagattctaggatcagtttgctg
tag
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integrated database retrieval system
