Trachemys scripta elegans (red-eared slider): 117884313
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Entry
117884313 CDS
T07347
Symbol
CPSF4
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 4 isoform X1
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
117884313 (CPSF4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tst03021
]
117884313 (CPSF4)
03019 Messenger RNA biogenesis [BR:
tst03019
]
117884313 (CPSF4)
Transcription machinery [BR:
tst03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
117884313 (CPSF4)
Messenger RNA biogenesis [BR:
tst03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
117884313 (CPSF4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-CCCH
zf_CCCH_4
zf-CCCH_3
Torus
zf-CCCH_2
zf-CCHC
zf-CCCH_4
zf-CCHC_3
zf-C3H1
Nab2-like_zf-CCCH_
Motif
Other DBs
NCBI-GeneID:
117884313
NCBI-ProteinID:
XP_034640514
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All DBs
Position
10:complement(8473888..8482447)
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AA seq
269 aa
AA seq
DB search
MQELIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFLRAACGKGGMCPFRHI
SGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESK
IKDCPWYDRGFCKHGPLCRHRHTRRVICVNYLVGFCPEGPACKFMHPRFELPMGTTEQPP
LPQPTQPQQKQNNNPPLQRSSSLIQLTSQNSSPNQQRTPQVIGVMQSQSNNVGNRGPRPL
EQVTCYKCGEKGHYANRCTKGHLAFLSGQ
NT seq
810 nt
NT seq
+upstream
nt +downstream
nt
atgcaggagctcatcgccagcgtggaccacatcaagttcgacctggagatcgcggtggag
cagcagctgggggcgcagcccctgcccttccccggcatggacaaatcgggtgctgctgtc
tgtgaattttttttaagagctgcctgtggaaaaggaggcatgtgtcctttccgacacatc
agtggagaaaagacagttgtttgcaaacactggctccgagggctgtgcaagaagggagac
cagtgtgagttccttcatgagtatgacatgaccaagatgcctgagtgttatttctactcc
aaatttggagagtgcagtaacaaagaatgtccgttcttgcacattgacccggagtctaag
atcaaagactgcccctggtatgacagaggcttctgtaaacacggtcccctctgcagacac
agacacactcgaagagtcatttgtgtgaattacctggtgggattttgtccggaggggccc
gcttgtaaattcatgcatcctcgatttgaactgcctatgggaaccacagagcaaccacca
ctgcctcagccgacacaaccacagcaaaagcaaaataacaatccgccattacaaaggtca
tcatccttgatccagttaacgagtcagaactcttctcccaaccagcagaggaccccacaa
gtcatcggagttatgcagtctcaaagcaacaatgtggggaacagaggtccccggccactg
gagcaggtcacctgttacaagtgtggtgaaaaaggacattacgccaacagatgcaccaaa
ggacatctggcctttctaagcggacagtga
DBGET
integrated database retrieval system
