Trachemys scripta elegans (red-eared slider): 117884647
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Entry
117884647 CDS
T07347
Symbol
COL18A1
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
tst
Trachemys scripta elegans (red-eared slider)
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
tst04147
]
117884647 (COL18A1)
00535 Proteoglycans [BR:
tst00535
]
117884647 (COL18A1)
00536 Glycosaminoglycan binding proteins [BR:
tst00536
]
117884647 (COL18A1)
Exosome [BR:
tst04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
117884647 (COL18A1)
Proteoglycans [BR:
tst00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
117884647 (COL18A1)
Glycosaminoglycan binding proteins [BR:
tst00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117884647 (COL18A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Fz
DUF959
Laminin_G_3
DUF1554
Motif
Other DBs
NCBI-GeneID:
117884647
NCBI-ProteinID:
XP_034641067
LinkDB
All DBs
Position
11:62224296..62476596
Genome browser
AA seq
1870 aa
AA seq
DB search
MAPVEQHLCLLLLLTCCCSLAEAQFLGWLWGSQKTPKVTTLPPTESPATEGQTAELLTSP
VATTTEAAVPATAQPGDRVWRTLSVTRQAPAMDTAVPALASPAMPQGKEENIAGVGAEIL
DVAEGIRSLVQLWDQRTGNTGEPTAAAPLTTPHTSLAALSSATGLAGRGNMTANLTGEGH
SLIGTRVPEASLPTPAGPPPAWNRTQALLQKPAAALPGSASFSFSPGGDARGEIFAEDQE
GAVLPQARAGGGVASEKRGGVSPTASVLDWWELQTNISVHAGIPAQLAGSLDSWLSHYIA
HSNQSVSYGNSTRRSLKNNSSQSVQSTDPSIMHFGMAVADLTRNHTDAVSNMNATNSVEF
FSANNSESLEFDLLTYTMQLYNNGSAGLASSFPGLTLPAGRCLPFPADLPYCNNLGIRHF
RLPNYFHHGSDVEIWAALHEWEGLLTSRCHRYLEWFFCLLLVPGCNASIPITPPPCWGFC
EAVRDLCWIHLKEGRLPISCDSLPAEDAGYSCVFVNVSAEHFSTEVSLLQLIGDPPPEQI
TKVNGPDNTLAYVFGPDANTGQVARYHLSNPFYRDFSLLFHVQPTTDKAGVLFAITDASQ
TVIYVGVKLSAVHDRKQQIIFYYTEPGSESSYAAATFSVPSLVNEWTRFAISVEDDEVVL
YLNCEEFRRVRFERSPDEMELEDGAGLFVAQAGGADPDKYQGVIADLKVTGDRQAADLQC
EEQDEDSDVASGDFGSGVEERPHLSGRERGTLAVSRLPEPPPVTSPPTAGETVEKISVDS
QLQTEQTKVEGPQQISTGATVGSKGEKGAPGEKGERGPKGDSGTGGVLAAGGTKGNKGEK
GDLGVKGSAGFGYPGSKGQKGEPGAQGSPGPAGPPGPPGSTVQRLDGSVVEQVTGPPGPR
GPPGPPGEDGLPGKDGEPGDPGEDGKPGDVGPQGFPGTPGEPGLKGQKGEPGVGARGPPG
LPGPPGTPGLSSKQDKLTFIDMEGSGFGGDLESFRGPRGPPGPPGPPGVPGLPGEPGRFG
MNSTELPGPPGLPGLPGRDGVPGAQGPPGPPGSPGKSGLAGQPGLRGERGDPGDLGLPGA
PGPKGGKGEMGLAGAPGETGLAGLPGPMGPRGLPGPPGPAGPPGPGYEAGFGDMEGSGMP
FLSAVPGERGPEGPQGPPGLPGLKGDAGSPGLPGLPGQKGDHGAPGVDGRPGLEGFPGPQ
GPKGDKGSQGAKGERGQDGVGSPGPPGLPGPPGQVTYELGEERALASLPGPEGREGHAGF
PGPVGPKGDPGDPGFPGTPGPKGEKGEPGAIIGPDGTGISAGMKGDKGEQGLVGPMGPAG
PHGRPGQKGEIGFPGRPGRPSMNGLKGEKGDPGGLGLQGPPGPPGPPGPPGAPGSVVSVY
DNNAFSESGPPGPPGLPGYQGAPGQKGERGETGTPGPPGQFPYDLNEFGSTFRGEKGDRG
DPGLKGEKGEPGEGGLYGSSVSGPPGPQGYPGLPGPKGDSIRGLPGPPGPQGPPGIGYEG
RQGPPGPPGPPGPPSFPGPNRQTVSIPGPPGPPGPPGPPGTSGSLTSSGLRILPTYQSML
STAQEVPEGWLIFVQDREELYVRVRSGFRRVRLEEHTSISSPGLDNEVYDKPPSVHYSHG
GTASSGFLHPRREHNPSSTARPWRADDSIANHHRLPDHSPHGAQPQQEPLDSFSPNRRGE
STPSAIHRHPDFQPALHLVALNAPLSGSMRGIRGADFQCFQQARAVGLTGTFRAFLSSRL
QDLYSIVRRADRSGVPIVNLQDEVLFNNWEALFSGTEAQFRAGVRILSFDGRDVLRDSAW
PQKNVWHGSDAKGHRLTESYCETWRTDDGVVTGQASSLASGKLLEQKVSSCQNTFIVLCI
ENSFMTSSKK
NT seq
5613 nt
NT seq
+upstream
nt +downstream
nt
atggctccagtggagcagcatctgtgtctcctgctcttgctaacctgctgctgctccttg
gcggaggcacagtttcttggctggctctgggggagccaaaaaacccccaaggtaacgacc
ctgccccccacagagagccccgctacggagggacagacggcggaactgcttacctctcct
gtggccaccacgacagaggctgctgtgccggcgaccgcgcaaccaggggaccgagtatgg
cgcacgctctcagtcacgaggcaggcaccagccatggacaccgctgtccccgctctggca
tcccctgccatgccccagggcaaagaggagaacatcgcgggagtgggggctgagatcctg
gacgtagcagagggcatcaggagcctggttcagctgtgggatcagaggaccgggaacaca
ggggagcccacagccgctgctcctctgacaacccctcacaccagcctggctgctctaagc
tctgcaacggggctggctggccgtgggaacatgactgccaacttgacaggggagggccac
agcctgatcgggaccagggtgccagaggcttcacttcccacgccagcagggcccccgcct
gcctggaacaggactcaggcgctcttacagaagcctgcagcggctcttccaggtagtgct
tctttctcgttttcaccaggtggagatgcccgtggtgagatctttgcagaggatcaggaa
ggtgctgtcctcccacaagcaagggctggcgggggagtggcctcagaaaagagaggagga
gtttcaccgacagcaagtgttctggactggtgggagctgcagaccaatatcagcgtgcat
gccgggattccagcccagctggcaggttctttagacagctggctatcccattatattgca
cattcaaaccaatcggtctcttatgggaatagtacccgtcgcagccttaaaaataacagc
agccaatcagtgcaaagcactgacccttccataatgcattttgggatggcggtggctgat
ttaactaggaaccatactgatgctgtttctaatatgaatgcaactaattctgtggaattt
ttttctgccaataattctgaatctcttgagtttgatttactaacctacactatgcaactt
tataacaatggtagcgcagggcttgcttcctcctttcctggattgacacttccagcgggt
cgctgcttgcccttcccagccgacctgccatattgcaacaacctgggcataaggcatttc
agattaccgaattatttccatcatggcagtgacgtggaaatttgggctgctttgcatgag
tgggaggggcttctgacatctcggtgccaccgctacctggaatggtttttctgcttgctg
ctggtccccgggtgcaatgcttctattccgataacgcccccaccgtgctgggggttctgt
gaggctgtgagagatctgtgctggattcatttgaaagaggggcgcctcccaatatcatgt
gactctctccctgcagaggatgctgggtattcttgtgtgtttgtaaatgtgtctgcagaa
catttcagcacagaagtcagtcttttgcagctgattggagatcccccaccggagcaaata
accaaagtcaatggccccgacaacactctcgcctatgtcttcgggccggatgccaacacc
ggtcaagtggcccggtaccacctgtctaaccccttttatagagacttctcgctccttttc
catgttcagcccaccaccgacaaggccggcgtgctctttgccatcacagatgcctcgcag
acggtcatctatgtcggagtgaagctctccgccgtgcacgacaggaagcaacagatcatc
ttctactacacagagccgggctccgagagctcgtatgcagctgcaacgttctccgtgcct
tccctagtgaacgagtggactcgctttgccatcagcgtggaggatgacgaggtggttctg
tacctgaactgtgaggagtttcgccgggttcgctttgagcgctctcccgatgagatggaa
ctggaggatggggccgggctctttgtggctcaggctggaggggctgatccagataaatac
cagggggtgattgcagatctgaaagtgacaggtgatcgccaggcagctgatctccagtgt
gaggagcaggacgaggatagcgatgtggcatctggagattttggaagtggagttgaagaa
agaccccacctatcaggaagggaacgggggaccctggctgtgtcgcggctcccggaacct
cccccggtcacttctccccccaccgctggggagacagtagagaaaataagcgtggactct
cagctgcaaactgagcaaaccaaagtggaaggaccacagcaaatttctaccggagccacg
gttggttcaaaaggtgaaaaaggggccccgggagagaaaggtgaacgtggcccaaaaggg
gactccggaaccggcggggttctagcagccggcggcaccaaaggcaacaagggagaaaaa
ggagacctgggcgttaagggaagtgcaggatttgggtatcccggctctaaggggcagaaa
ggggagccaggtgcccagggatctcccggacctgctggcccgcctgggccccctggctct
acagtgcagcgcctggacggctctgtggtggagcaagtcaccgggcctccaggaccaaga
ggtcccccagggccgcccggggaagatggcctccctggcaaggacggcgagcctggtgat
cctggtgaagatgggaaacctggtgacgttgggccccagggattccctggaactcccgga
gagcctggcctcaaggggcagaagggtgagcccggagtcggcgcaagaggcccccctgga
ctgcccggaccgcctgggacaccaggtctctcttccaaacaggacaagctgacgttcatc
gacatggaaggctctgggtttggaggcgatctggaaagcttccggggcccccgaggccca
ccagggccccccgggcctcctggggtgcctggcctgccaggagagccaggaagatttggg
atgaacagcactgagctgccaggaccccccggcctccccggcctgccaggcagagatggt
gtccccggagcccaaggcccaccaggtcctccgggttctccaggaaaaagtgggttggcc
ggccagcctgggcttcgaggagaacggggggacccaggagacctaggcctccccggagct
cctggacccaagggcggtaagggcgagatggggctggccggagccccaggggaaaccggg
ctggcaggccttcctggaccaatgggaccacgaggactaccaggtcccccaggccctgct
ggacctcctgggccaggctacgaggccggatttggagacatggaaggctcggggatgccg
ttcctttctgccgttcctggagagcgtggtcccgaagggccacaggggccaccgggactc
cccggactcaagggggacgctggcagccctgggctgcctggcttgccaggacaaaagggg
gaccacggtgctccgggtgtggatgggcgcccagggctggaaggtttcccaggacctcag
ggacccaagggtgacaagggcagtcaaggggctaaaggtgaacgaggccaagatggagtg
ggctccccaggtccccccgggctccctggacccccggggcaggtcacctatgagttgggt
gaagagagagcattagctagtttgccaggccctgagggcagagaaggccatgctggcttc
ccgggcccagtgggacctaaaggagacccgggagacccaggtttcccaggcactccagga
ccaaagggtgagaaaggagagcctggagcgatcatcggcccagatgggacgggcatctca
gctggcatgaaaggagacaagggtgagcaggggctggtgggacccatgggcccagcaggc
ccgcatgggcgacctggacagaagggggaaatcggctttcctggcagaccgggtcgtccc
agcatgaatgggctgaagggcgagaaaggggaccccggagggcttggcttgcagggtcct
ccgggtcccccaggtcccccgggacccccaggcgcccctggcagtgtagtgtccgtctac
gacaataacgcatttagtgagtcgggccctcccggccctccaggattgcctggctaccag
ggtgccccaggacaaaagggtgaacgaggcgagacaggcacccccgggcccccaggccag
ttcccctatgatctcaacgaatttggttccaccttccggggtgaaaaaggagatcggggg
gaccctgggctgaaaggagagaagggggagcccggcgagggaggactgtatggatcaagc
gtctctggacctccaggtcctcagggttatcctggccttccgggtcccaagggggacagc
attagaggcctgcctggccccccagggcctcagggaccccctggcattgggtatgagggg
cggcaaggtccccctgggcctcctgggcctcccgggcccccctcctttccaggacccaac
agacaaactgtcagcatccctggcccacctgggccgccagggccaccgggacctccaggg
accagcgggtcgttgacctcttccgggctgcggatcctgccgacgtatcagtccatgctg
agcacggctcaggaggtgcccgagggctggctgatcttcgtacaggacagagaagagctg
tacgtccgggtgcggagcggcttccggagagtccgtctggaggaacacacttccatctcc
agccccgggctggacaacgaagtgtacgacaagccgccaagcgtccactactcgcacggc
ggcactgcctcctccggcttcctgcacccacgccgagagcacaacccctcctccacagcc
cggccctggcgagcggacgacagcatcgccaaccaccaccgcctccccgaccactcgccc
cacggcgcccagccccagcaagagccattggacagcttctccccaaatcgccggggggag
agcaccccctctgccattcacaggcaccctgacttccaacccgccctccacctggtggca
ctgaatgccccgctgagcggcagcatgcgtggcatccggggagctgacttccagtgcttc
cagcaggcccgggcagtcgggctgacgggcacgttccgagccttcctgtcctcccggctg
caagacctgtacagcattgtgcgcagggccgaccggagcggagtgcccatcgtcaacctc
caggatgaagtgctgtttaacaactgggaggcgctgttctcgggcacagaggctcagttc
cgagctggtgttcgcatcctctcgtttgacggaagagatgtcctgagagactctgcgtgg
cctcagaagaatgtctggcacggctctgacgccaagggccaccggctcacagagagctac
tgcgagacatggaggacggacgatggcgtggtgacaggccaagcctcctcgctggcctcg
ggcaagctcctggagcagaaggtgagcagctgccagaacaccttcatcgtcctgtgtatt
gagaacagcttcatgacctcttccaaaaagtga
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integrated database retrieval system
