Trachemys scripta elegans (red-eared slider): 117884744
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Entry
117884744 CDS
T07347
Symbol
XRCC5
Name
(RefSeq) X-ray repair cross-complementing protein 5
KO
K10885
ATP-dependent DNA helicase 2 subunit 2
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
117884744 (XRCC5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tst03400
]
117884744 (XRCC5)
DNA repair and recombination proteins [BR:
tst03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA-PK complex
117884744 (XRCC5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ku_N
Ku
Ku_PK_bind
Ku_C
VWA_2
VWA
DUF6005
Phage_int_SAM_5
Motif
Other DBs
NCBI-GeneID:
117884744
NCBI-ProteinID:
XP_034641326
LinkDB
All DBs
Position
11:complement(3363957..3429881)
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AA seq
731 aa
AA seq
DB search
MARGGGKAAIVLCMDVGFAMSNSAPGEESPFEQAKKMMTMFVQRQVFAESKDEVSVVLFG
TDGTANTLASGDQYQNITVQRHLMLPDFDLLEDIQNAVQPGSEQADFLDALVVCMDLLQK
ETIGKKYEKRHIEVFTDLSSPFSEDQLEIIIANLKKTGISLQFFLPFPVDDGEGSGDTGD
GRHSDMYRNSFPRKGLTEQQKEGICMVRKLMFALEEEGGLDEIYTFRESLERLSMFKKIE
RRPMAWPCQLTIGSNLSIRIVAYKSLAEEKLKKSWTVVDAKTLKKEDVQKETVYCLNDDD
ETEVPKDDLVQGFRYGSDIVPFSKVDEEQMKYKTEAKCFSVLGFSRSSQIQRHHYMGNQV
LKVFAAKDDEAAAVALSALIHALDELDVVAIVRYAYDRRSNPQVGVAFPCIKDAYECLIY
VQLPFMEDLRQYMFSSLKNNKKYTPTEDQLSAVDSLIDSMSLVYEDDDGETTEDIFKTSK
IPNPQFQRLYQCLQHKAFHPDKPLPPTEQHLLEMLEIPQEVRERCQAPLEKIKALFPLKD
AGKKKEQKTAQDVFKDNNEDGPSTKKANAENEEGSFSIANLAEGNVTTVGSINPAENFCV
LVRQKNANFKEVSQQLVNRIEQFLETKGLQYYMKSINCIRVFREEAIKLSEVLCFNDFLR
ALKEKVEDQTLADFWEILIQDGISLITKDEAEGSSVTSDEAKKFLAPKEKPAEAPSVAGE
GGDVDDLLDMM
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
atggcgcggggaggcggcaaggccgccatagtgctgtgtatggatgtaggctttgcaatg
agcaattctgctcctggagaagagtctccgtttgaacaagccaagaagatgatgacgatg
ttcgtgcagcgacaggtgtttgctgagagcaaagatgaagtctctgtagttttgtttggc
acagatggcacggcgaatacccttgccagtggtgatcagtatcagaacattactgtacaa
agacacctgatgctaccggattttgatttgctggaggacatacaaaacgcagttcaacca
ggctctgaacaagcagacttcctggatgcacttgtcgtgtgcatggacttgcttcaaaag
gaaacgataggaaagaaatacgagaaacgacacattgaggtgtttacagaccttagcagt
cccttcagtgaggatcagctggaaattatcatcgctaacttgaagaaaactggaatctca
ctgcaatttttcttgccatttccagtggatgatggagagggaagtggggatacaggtgat
ggtcgacattctgatatgtacagaaactcttttccaaggaagggcttaaccgagcagcag
aaagaaggcatctgtatggtgagaaaattgatgtttgctttagaggaagaaggaggcctg
gatgaaatttacactttcagagagagcctggagcgtctttcaatgtttaagaaaatcgaa
agaagacctatggcttggccctgccagctaactataggttctaatctgtctataaggatt
gtggcatacaaatcactcgctgaagagaagctgaaaaagtcctggactgttgtagatgcc
aagaccttaaaaaaagaagatgtgcaaaaagagactgtctactgtttgaacgatgatgat
gaaacagaagttccgaaagatgatcttgttcaagggttccgctatgggagcgatatagtt
cctttctctaaagtagatgaggagcaaatgaaatacaaaaccgaagcaaagtgcttttca
gtattaggattcagcagatcatctcagatccagaggcatcactacatgggcaaccaggtt
ctgaaggtctttgcagcgaaagatgatgaggccgcagcagttgctctttctgctctgatt
catgctttggatgagttggatgtcgtggccatagtacgttatgcttatgacagaagatct
aatcctcaggttggcgtagcctttccatgtatcaaggatgcctatgagtgtctgatatat
gtgcagttacccttcatggaagacttacgacaatacatgttttcctctttgaaaaacaat
aaaaagtacactcctacagaggatcagttatctgcagttgactctctgattgattctatg
agtttggtttatgaagatgatgatggggagacaaccgaagacatatttaaaaccagcaaa
ataccaaaccctcagtttcagaggttatatcagtgcctgcagcataaagcttttcatcct
gacaagccactgccacccactgaacaacatctgttagaaatgttggagatacctcaagag
gtgagagaaagatgccaggctcctcttgaaaaaataaaggcacttttccccctgaaagat
gccggcaagaagaaagaacagaagactgctcaagatgtcttcaaagacaacaatgaagat
ggacccagtactaaaaaggcaaacgctgaaaatgaagaaggcagctttagcatcgcaaac
cttgctgaaggcaatgtcaccactgttggaagtattaacccagcagaaaacttctgtgtt
ctagtgaggcagaagaatgctaacttcaaggaagtgagccagcagctggtaaaccgcatt
gaacagttcttggaaactaaaggtttacagtactatatgaagagcatcaactgtattaga
gttttcagagaggaggccattaagctgtcagaggtgctgtgctttaatgatttcctgcgg
gctctaaaagaaaaggtggaagaccaaaccttagctgatttctgggagattctgatacaa
gatggaatttctttgatcaccaaagatgaagcagaaggtagttcagtgactagtgacgaa
gccaaaaagttcttggcccccaaagaaaaaccagctgaagctccgtcagtggctggggaa
ggtggtgatgtggatgatttactggacatgatgtaa
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