Trachemys scripta elegans (red-eared slider): 117884827
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Entry
117884827 CDS
T07347
Symbol
ERCC3
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPB
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst03022
Basal transcription factors
tst03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
117884827 (ERCC3)
09124 Replication and repair
03420 Nucleotide excision repair
117884827 (ERCC3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tst03021
]
117884827 (ERCC3)
03400 DNA repair and recombination proteins [BR:
tst03400
]
117884827 (ERCC3)
Enzymes [BR:
tst01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
117884827 (ERCC3)
Transcription machinery [BR:
tst03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
117884827 (ERCC3)
DNA repair and recombination proteins [BR:
tst03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
117884827 (ERCC3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
SNF2-rel_dom
AAA_22
AAA_34
DUF2605
Motif
Other DBs
NCBI-GeneID:
117884827
NCBI-ProteinID:
XP_034641551
LinkDB
All DBs
Position
11:3627393..3670783
Genome browser
AA seq
778 aa
AA seq
DB search
MGRRERDKKKSKKRHYDDDDDEEDETPGRESQEAVPSAAGKQVEESGIKVDEYGAKDYRL
QMLLKGDHSSRPLWVAPDGHVFLEAFSPVYKYAQDFLVAIAEPVCRPTHIHEYKLTAYSL
YAAVSVGLQTSDITEYLQKLSKTGVPDGIIQFIKLCTVSYGKVKLVLKHNRYFVESTHPE
VIQQLLQDHVIKECRLRNAEGEETELITETFTSKSAISKSSDGGPSTSQGTDAQNKSDVP
ADLYEFYEQMDKDEEEEEETQTVSFEVKQEMIEELQKRCIHLEYPLLAEYDFRNDSVNPD
INIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTAACTVRKRCLVLG
NSSVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGCSVAISTYSMLGHTTKRSWEAER
VMEWLKSQEWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDLNFLIG
PKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNKFRACQ
FLIKFHERRNDKIIVFADNVFALKEYAIRLGKPYIYGPTAQGERMQILQNFKHNPKINTI
FISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAKKGTVAEEYNAFFYSLVSQ
DTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEEEQLSFSSKEEQQQLLQKVLQASDLDAE
EEVVAGEYGSKSTQVSRRFGTMSSMSGADDAVYMEYHTSRSKASSNKHVHPLFKRFRK
NT seq
2337 nt
NT seq
+upstream
nt +downstream
nt
atgggccggcgggagcgagataagaagaaatccaagaaacgtcattacgatgatgacgat
gatgaggaagacgaaacgcctggtagagagtctcaggaagctgttccatctgcagcaggg
aagcaagtggaagaatctgggatcaaagtggatgagtatggagcaaaagactacagactc
cagatgcttctaaagggtgatcattcctcacgtccactctgggtggctcctgatggccat
gttttcctggaagccttttcgcctgtttacaaatatgctcaggattttctagttgctatt
gctgagcccgtgtgcaggccaacccacatacacgaatacaaactcactgcttactcgctg
tatgctgctgtcagcgttggcttacaaacaagtgacatcactgaatatttgcaaaagctg
agcaagacgggtgtcccagatggaataattcagtttatcaagctgtgtactgtcagctat
ggaaaggtaaagctagtgctgaaacacaacaggtattttgtagaaagcacccaccctgaa
gtcatccagcagcttcttcaggaccacgtcatcaaagagtgtcggctgagaaacgctgag
ggagaagaaacagagctcatcacggagacattcacgagtaaatcagcaatttccaaatcc
agtgatggaggtccttcaacatcacaagggacagatgctcagaataaatcggatgtcccg
gctgacttatatgagttttacgagcagatggacaaagatgaggaggaggaggaagaaaca
cagactgtatcttttgaagtcaagcaggaaatgattgaagagcttcagaagcgttgcatc
cacttggagtaccccttgctggcagagtatgacttcagaaatgattcagtgaatcctgac
attaatatagacctgaagcccacagctgttctcagaccttaccaggagaaaagtctaagg
aagatgtttgggaatgggcgtgctagatctggtgtcattgtcctgccatgtggtgccggc
aagtctttagtaggagttacagctgcgtgtacagtccgtaagcgctgcctggtacttggc
aactcttctgtctctgtggagcagtggaaagcccagttcaaaatgtggtccaccatagat
gacagccaaatctgtcgattcacgtcagatgccaaggacaagcctatcggctgctctgtt
gccattagcacttactctatgttgggacacacaactaagaggtcttgggaggcagagagg
gttatggaatggcttaaaagtcaagagtggggccttatgatacttgatgaggtgcacacc
atacctgccaaaatgttcagacgtgtgctcaccattgtgcaagctcactgcaaactgggc
ctgactgctactctcgtcagagaagacgacaaaattgtcgacttgaatttcctgattgga
ccaaaactctatgaagccaactggatggagctgcagaacaacggctacattgctaaagtc
cagtgtgctgaggtttggtgcccaatgtctccagagttttacagagaatatgtggctatc
aaaacaaagaagcggatattgctctacactatgaacccaaataaattcagagcatgccag
ttcctgatcaaatttcatgagcgaaggaatgacaagatcattgtatttgctgacaatgtg
tttgcgttgaaggagtatgcaatcagactggggaaaccttacatatatggtcctactgca
caaggcgagagaatgcagattctacagaacttcaagcacaatccaaaaatcaacactatc
tttatttccaaggtaggtgacacatcgtttgatctaccagaagccaatgttctgattcag
atttcgtcccatggtgggtctcgaagacaggaggctcaaagattgggacgagtgctgaga
gccaaaaaagggacggttgcagaggaatacaatgccttcttttattcccttgtatctcaa
gatactcaggaaatggcatattcaaccaaacgacaaagatttctggtagatcaaggttac
agcttcaaggtgatcacaaagcttgcaggaatggaagaagaacaactttcattttcatcc
aaagaagagcagcaacagcttcttcagaaggtcctgcaagcgtctgacctggatgctgag
gaagaggtggtagcaggagagtatggctcaaagtcaactcaggtgtcccgtcgttttggc
acaatgagctctatgtctggagcagatgatgcagtttatatggaatatcacacttcacgg
agcaaggcatcttcaaataaacatgtccatccacttttcaaacgtttcaggaaatga
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integrated database retrieval system
