Trachemys scripta elegans (red-eared slider): 117884838
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Entry
117884838 CDS
T07347
Name
(RefSeq) sodium channel protein type 2 subunit alpha-like isoform X1
KO
K04834
voltage-gated sodium channel type II alpha
Organism
tst
Trachemys scripta elegans (red-eared slider)
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
tst04040
]
117884838
Ion channels [BR:
tst04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
117884838
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_cytopl
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
GPHH
ATP-synt_B
FraC
IQ
RskA_C
Motif
Other DBs
NCBI-GeneID:
117884838
NCBI-ProteinID:
XP_034641576
LinkDB
All DBs
Position
11:complement(33588058..33703749)
Genome browser
AA seq
2010 aa
AA seq
DB search
MAQALLVPPGPDSFCYFTRESLAAIEKRAAEEKAKKPKQDHTDNDDEDGPKPNSDLEAGK
TLPFIYGDIPPGMVSEPLEDLDPYYINKKTFIVLNKGKTIFRFSATSALYILTPVNPVRK
IAIKILVHSLFSMLIMCTILTNCVFMTMSNPPEWTKNVEYTFTGIYTFESLIKILARGFC
LEGFTFLRDPWNWLDFSVILMAYVTEFVNLGNVSALRTFRVLRALKTISVIPGLKTIVGA
LIQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRHKCLQWPPDNSTFEVNITSYLNSTM
DVNGTFVNTTVSTFNWKEYIEDETHFYVLEGQRDALLCGNSSDAGQCPEGYICVKAGRNP
NYGYTSFDTFSWAFLSLFRLMTQDFWENLYQLTLRAAGKTYMIFFVLVIFLGSFYLVNLI
LAVVAMAYEEQNQATLEEAEQKEAEFQQMLEQLKKQQEDAQATAAVVAASVASRDLSGVG
GLGELLESSSEASKLSSKSAKERRNRRKKRRQKELSEAEDKGDVEKFPKSESEDSIRRKS
FRFSMEASRLTYEKRFTSPHQSLLSIRGSLFSPRRNSRTSIFSFRGRAKDIGSENDFADD
EHSTLEDNESRRESFFAPNRHGERRNSNISEASTSSRMVPALPPNGKMHSTVDCNGVVSL
VGGPSALTSPTGQLLPECTTTETEIRKRRLSSYQISMEMLEDSAARQRAMSIASILTNTM
EELEESRQKCPPCWYRFANTFLIWDCWSPWLKVKHIVNLVVMDPFVDLAITICIVLNTLF
MAMEHYPMTEQFSSVLTVGNLVFTGIFTAEMVLKIIAMDPYYYFQEGWNIFDGIIVSLSL
MELGLANVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIF
AVVGMQLFGKSYKDCVCKIATDCVLPRWHMHDFFHSFLIVFRVLCGEWIETMWDCMEVAG
QAMCLIVFMLVMVIGNLVVLNLFLALLLSSFSSDNLAATDDDNEMNNLQIAVARIQKGID
YVKKKLQEFVQKAFVRKQKALEEIKALEDLNNKKDSCISNHTVIEISKDLNCLRDGNGTT
SGVGTGSSVEKYVIDENDYMSFINNPGLTVTVPIAIGESDFENLNTEEFSSESDMEESKQ
KLNASSSSEGSTVDIAPPGEGEQAEIEPEEALEPIACFTEGCVQKFTCCQVSIEDGKGKN
WWNLRKTCYSIVEHNWFETFIVFMILLSSGALAFEDIYIEQRKTIKTMLEYADKVFTYIF
ILEMLLKWVAYGFQMYFTNAWCWLDFLIVDVSLVSLVANALGYSELGAIKSLRTLRALRP
LRALSRFEGMRVVVNALIGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKFYHCVNTTTGE
MFDISDVDNYTQCEDLIKKNESARWKNVKVNFDNVGAGYLALLQVATFKGWMDIMYAAVD
SRDLLDQPKYEDNLYMYLYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKFGGQDIFMTEE
QKKYYNAMKKLGSKKPQKPIPRPANKFQGLVFDFVTKQVFDISIMILICLNMVTMMIETD
DQSDEMETILHRINLVFIVLFTGECVLKLISLRYYYFTIGWNIFDFVVVILSIVGMFLAK
VIEKYFVSPTLFRVIRLARIGRILRLIKGAKGIRTLLFALMMSLPALFNIGLLLFLVMFI
YAIFGMSNFAYVKREVGIDDMFNFETFGNSMICLFQITTSAGWDGLLAPILNSGEPDCDP
YKDHPGSSVKGDCGNPSVGIFFFVSYIIISFLVVVNMYIAVILENFSVATEESAEPLSED
DFEMFYEVWEKFDPDATQFIEYSKLSDFAASLDPPLLIAKPNKVQLIAMDLPMVSGDRIH
CLDILFAFTKRVLGDSDEMDALRIQMEDRFMAANPSKVSYEPITTTLKRKQEEVSATVIQ
RAYRCYILKQKVKKVSCMYNKDKTEGDGLPVKDMIIDKLNENSTPEKTYESSSTTSPPSY
DSVTKPDKEKYEKDKIEKDYKGKNVRESKK
NT seq
6033 nt
NT seq
+upstream
nt +downstream
nt
atggcacaggcattgctggtaccaccaggacctgacagcttctgctattttactagagaa
tctctcgcagctattgaaaagcgtgctgcagaagaaaaagctaaaaaacccaaacaagat
catacagacaatgatgatgaagatggcccaaagccaaatagtgacttggaagcaggaaag
acactgccatttatttatggtgacatacctccaggaatggtgtccgagcccttggaggac
ctggacccatattatatcaataaaaaaactttcatagtactgaataaaggaaagacaatt
ttccgattcagtgccacatctgccttgtacattttaactcctgtcaaccccgttagaaaa
attgctattaagattttggtacattcattgttcagcatgcttattatgtgcactattttg
accaactgtgtatttatgaccatgagtaaccctccggagtggacaaagaatgtagagtac
acattcactggaatttatacctttgaatcgcttataaaaattcttgcaaggggcttctgt
ttagaaggttttactttccttcgtgacccatggaattggcttgacttcagtgtcattttg
atggcgtatgtaacagaatttgtaaacctaggcaatgtttcagctcttcgaactttcaga
gtattgagagctttgaaaactatttctgtaatcccaggcttgaagactattgtaggagcc
ctaattcagtctgtgaagaagctctcagatgtaatgatcctgactgtgttttgtctgagt
gtatttgcactaataggactgcagctgttcatgggcaacttgaggcataaatgcttgcag
tggcctccagacaattccacttttgaagtaaacattacttcctacttgaatagcacaatg
gacgtaaatggtacctttgttaatacaactgtgagcacgtttaactggaaggagtacatt
gaggatgaaactcatttttacgttttggagggacaacgagatgccctactttgtggtaat
agctctgatgcaggtcaatgtccagaaggatatatatgtgtgaaagctggtagaaacccc
aattatggctacacgagctttgacacattcagctgggcattcttgtcactctttcggctg
atgactcaggacttctgggaaaatctttaccagttgactctacgagctgctggcaaaaca
tacatgatattttttgttctggtgatttttttgggctctttctatctggtgaatttgatc
ctggctgtggtcgccatggcctatgaagaacagaatcaagcaacactggaagaagcagag
cagaaagaggcagaatttcagcagatgcttgaacagctaaaaaaacaacaagaagacgct
caggcaacggcagcagtagtagcagcgtctgttgcgtcaagagatttgagtggagtaggg
ggactaggggagctcttggaaagttcctcagaagcatcgaagttgagctcaaagagtgct
aaagaaaggagaaacagaaggaagaaaagaagacagaaggaactgtctgaagcagaagac
aagggagatgttgaaaagttccccaaatctgaatcagaggacagtatcagaaggaaaagt
ttccgattctcgatggaagcgagtcgactgacatatgaaaagaggttcacttccccccac
cagtctttgctgagtattcgtggctccctgttttccccaaggcgcaacagcagaacgagc
attttcagcttcagaggtcgagcaaaagatataggatcagaaaatgacttcgctgatgat
gagcacagcactcttgaagacaacgagagcagaagagagtctttctttgctccaaacaga
catggtgaaagacgcaacagtaacattagtgaagccagtacgtcatccaggatggtacca
gcgcttccaccaaatgggaagatgcacagcactgtagattgcaatggggtggtttctttg
gttggaggaccttcagctctcacttcgcctactggacaacttctcccagagtgcaccact
acagaaacagaaataagaaaaagaagattgagttcttatcaaatttccatggaaatgttg
gaagattctgctgcaaggcaaagagcaatgagtatagctagcatactcacaaacacaatg
gaagaacttgaagaatccagacaaaaatgtccaccatgctggtacagatttgcaaacact
ttcttgatctgggactgctggagcccatggttaaaagtaaaacatatagtcaatttggtt
gtgatggatccatttgttgatcttgctattactatctgcattgttctaaacacattgttt
atggccatggaacactacccaatgacagaacagttcagcagtgtgcttactgtgggaaac
ctggtatttactgggatcttcacagcagaaatggttttaaagataattgccatggatcct
tattattatttccaagaaggctggaatatttttgatggtattattgtcagccttagttta
atggaacttggtcttgcaaatgttgaaggattatcagttctccgctcattcagattgctc
cgagtatttaagttggcaaaatcttggccaacactgaatatgctgataaagattattggt
aactcagtgggggctttgggaaatttgacgttggtgctggccatcattgtcttcattttt
gctgtggttggtatgcagctgtttggtaaaagctacaaagactgtgtctgcaagattgct
acagactgcgtacttccacgctggcacatgcatgactttttccactctttcttgattgta
ttccgagtgctgtgtggagaatggatagagactatgtgggattgtatggaagttgcaggc
caagccatgtgccttattgttttcatgctggtcatggtcattggaaaccttgtggtattg
aacctgtttctggccttgctactgagctcgtttagttcagataaccttgctgctacagat
gatgataatgaaatgaacaatctccagattgccgttgcaaggattcagaagggaatagat
tatgtgaaaaaaaagttacaggaattcgtccaaaaagcctttgttagaaagcaaaaagca
ttagaggaaatcaaagcacttgaagatctaaacaacaagaaagacagctgcatttccaac
catactgtcattgaaataagcaaagatcttaattgtctcagagatgggaatggaacgacc
agtggtgtaggaacaggcagcagtgtggaaaaatatgtaattgatgaaaatgattatatg
tcattcataaacaatccgggccttactgtgacagtacctattgctattggagaatcagat
tttgaaaatttaaacacagaagagtttagcagtgagtcggatatggaagaaagcaaacag
aagctaaatgcatccagctcatctgaaggcagcacagttgatattgcccctcctggagag
ggcgaacaagctgagattgaacctgaagaagcgcttgaaccaatagcctgttttacagaa
ggttgtgtgcagaagttcacatgttgtcaagtaagtatagaagatgggaaaggcaaaaac
tggtggaatcttaggaaaacctgctacagcatagttgaacacaactggtttgagacattc
attgtcttcatgattcttctgagcagtggcgctctggcttttgaagacatatatatagag
cagcgcaagactatcaagaccatgctggaatatgctgacaaggttttcacttacatcttc
attctggaaatgcttctgaaatgggttgcctatggttttcaaatgtatttcactaatgcc
tggtgctggctggacttcttgattgttgatgtgtcgttggttagtctagtagccaatgcc
ttgggctattccgaacttggtgccattaaatcgcttaggacactcagagctttgagacct
ctaagagccttgtcacgatttgaagggatgcgggtggttgttaatgccctgataggagca
attccatccatcatgaatgtgctactggtttgtctgatattctggctaatcttcagcatc
atgggagtaaatctgtttgctggcaagttctaccactgtgttaacacaacaactggtgag
atgtttgatatcagcgatgttgacaattatactcagtgcgaggacctcataaaaaagaat
gaaagtgcccgatggaaaaatgtgaaagtaaacttcgataatgtaggcgctgggtatctt
gcgctgcttcaagtagctacatttaaaggatggatggatattatgtatgcagctgttgat
tcacgagatctactagatcagcctaagtatgaggacaacctgtacatgtatctttacttt
gtcatctttatcatcttcggatcatttttcaccctgaacctttttattggtgtcatcata
gacaacttcaatcaacaaaaaaagaagtttggaggtcaagacatatttatgacagaagaa
cagaagaaatactacaatgcaatgaaaaaactggggtccaagaaaccacaaaaacctata
cctaggccagcgaacaaattccaaggcctggtctttgattttgtaacaaaacaagtattt
gacatcagcatcatgattcttatctgccttaacatggtcaccatgatgatagaaacagat
gaccagagtgatgagatggaaactattttacacaggataaacctggtattcattgtcctt
ttcactggagaatgtgtcctgaaattgatttcactccgttattactacttcaccataggc
tggaacatttttgattttgtggttgtcattctctccattgtgggtatgtttctagctaag
gtgattgaaaaatattttgtgtcccccaccttgttcagagttatccgacttgccagaatc
ggccgaatcctacgtctcattaagggagctaaagggatccgtactttgctttttgctttg
atgatgtctcttcctgctttgtttaacattggtctcctgcttttcctggtcatgtttatc
tatgctatatttggaatgtccaactttgcctacgttaagagagaagttgggattgatgac
atgttcaactttgaaacttttggcaacagtatgatctgcctatttcaaattaccacgtca
gctggttgggatggtttgttagcgccaattcttaacagtggagaaccagactgtgaccct
tacaaagatcacccaggaagctcggttaaaggagactgtggtaacccttcagttgggatt
ttcttttttgtcagttatattatcatctcatttctagttgtagtaaacatgtatattgct
gttattttggagaacttcagtgttgctacagaagaaagtgccgagcccttgagtgaggac
gactttgagatgttctatgaggtttgggaaaagtttgatccagatgccacccagttcata
gaatacagtaaactgtctgattttgcagcttcactggatcctcctcttcttatagcaaaa
ccaaacaaagttcagcttattgcaatggatctgcccatggtgagtggtgacagaattcac
tgccttgacatcttgtttgcttttacaaagcgtgttttgggggacagtgatgagatggat
gcacttcgaatacagatggaagaccggtttatggcagcaaatccttctaaagtctcctat
gagccaattacaactacattaaaaagaaaacaagaagaggtatctgctactgttattcag
cgtgcttacagatgttacattttaaagcaaaaagttaaaaaagtctcctgtatgtataac
aaagataaaaccgaaggggatggcttacctgtcaaagatatgattattgataaactcaat
gaaaactccactccagaaaaaacgtatgagagctcctctacaacctctccaccttcctat
gatagtgttacaaagccagacaaagagaaatatgaaaaagataaaatagaaaaagactat
aaaggtaaaaatgttagggaaagtaaaaaataa
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integrated database retrieval system
