Trachemys scripta elegans (red-eared slider): 117884881
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Entry
117884881 CDS
T07347
Symbol
HSPD1
Name
(RefSeq) 60 kDa heat shock protein, mitochondrial
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117884881 (HSPD1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tst03019
]
117884881 (HSPD1)
03110 Chaperones and folding catalysts [BR:
tst03110
]
117884881 (HSPD1)
03029 Mitochondrial biogenesis [BR:
tst03029
]
117884881 (HSPD1)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
tst04147
]
117884881 (HSPD1)
Enzymes [BR:
tst01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
117884881 (HSPD1)
Messenger RNA biogenesis [BR:
tst03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
117884881 (HSPD1)
Chaperones and folding catalysts [BR:
tst03110
]
Heat shock proteins
HSP60 / Chaperonin
117884881 (HSPD1)
Mitochondrial biogenesis [BR:
tst03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
117884881 (HSPD1)
Exosome [BR:
tst04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
117884881 (HSPD1)
Exosomal proteins of other body fluids (saliva and urine)
117884881 (HSPD1)
Exosomal proteins of breast cancer cells
117884881 (HSPD1)
Exosomal proteins of colorectal cancer cells
117884881 (HSPD1)
Exosomal proteins of bladder cancer cells
117884881 (HSPD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
Motif
Other DBs
NCBI-GeneID:
117884881
NCBI-ProteinID:
XP_034641690
LinkDB
All DBs
Position
11:complement(54180731..54200337)
Genome browser
AA seq
570 aa
AA seq
DB search
MLRLSTVLRQMRPVSRALAPHLLRTYAKDVKFGAEARALMLQGVDLLADAVAVTMGPKGR
TVIIEQSWGSPKVTKDGVTVAKAIDLKDKYKNIGAKLVQDVANNTNEEAGDGTTTATVLA
RSIAREGFEKISKGANPVEIRRGVMLAVDAVIAELKKQSKPVTTPEEIAQVATISANGDQ
EIGNIISDAMKKVGRKGVITVKDGKTLNDELEIIEGMKFDRGYISPYFINTAKGQKCEFQ
DAYVLISEKKISSVQSIVPALEIANAHRKPLVIIAEDVDGEALSTLVLNRLKVGLQVVAV
KAPGFGDNRKNQLKDMAIATGGAVFGEEGLGLNLEDIQPHDFGKVGEVIVTKDDSMLLKG
KGEKAQIERRIQEIIEQLEVTTSDYEKEKLNERLAKLSDGVAVLKVGGTSDIEVNEKKDR
VTDALNATRAAVEEGIVLGGGCALLRCIPALDVLTPVNEDQKIGIEIIRRTLKIPAMTIA
KNAGVEGSLIVEKIMQSPAEIGYDAMLGDFVNMVEKGIIDPTKVVRTALMDAAGVASLLS
TAEAVVTEIPKEEKEVPVGGMGGGMGGGMF
NT seq
1713 nt
NT seq
+upstream
nt +downstream
nt
atgctccgtttatcaacagtgctacgtcagatgaggccagtgtccagagcactggcccca
cacctactacggacctatgcaaaagatgttaaatttggagcagaggctagagctcttatg
ctacagggagtagatcttctagcagatgctgtagctgtcaccatgggaccaaagggtaga
acagtgattattgaacaaagctggggaagtcccaaggtaacaaaagatggtgtgacagta
gccaaggcaattgacttgaaagacaaatacaaaaacattggagccaagttagttcaagat
gttgccaacaacacaaatgaagaggcaggagatggaactactactgcaacagtactggcg
cgttccattgccagggagggctttgagaaaatcagcaaaggagctaatcctgtggaaatc
aggagaggtgtgatgctagcagtagatgctgtcattgctgaactaaagaaacaatccaaa
cctgttacaactccagaagaaattgcccaggttgccacaatctcagcaaatggggaccag
gaaatcggcaacataatctctgatgcaatgaaaaaagttggacggaagggtgttatcaca
gttaaggatggaaaaaccctgaatgatgagttggaaataattgaaggtatgaagtttgac
cgaggctacatctcaccatatttcattaatacagccaaaggacaaaaatgtgaattccag
gatgcttatgtcttaatcagtgagaagaaaatttccagcgttcaatccatagttccagct
cttgaaattgccaatgctcaccgtaagcctttggtcattattgctgaagatgttgatggt
gaagctctcagtactctcgtcctgaacagattaaaagttggtcttcaggttgttgctgta
aaagcaccgggttttggtgacaatagaaagaaccagcttaaggacatggcaattgctact
ggtggtgctgtatttggagaagagggtttgggtctcaatctagaagacattcagcctcat
gactttggtaaagttggtgaggtcatcgtgacaaaagacgatagcatgcttctgaaaggg
aagggtgaaaaggctcaaattgaaaggcgtatccaagaaatcattgaacaattagaagtt
actacaagtgactatgagaaggagaaactaaatgaacgactggccaaactctctgatgga
gtagcagtactaaaggttggtggcacaagcgacattgaggtgaatgaaaagaaagacaga
gttactgatgcactgaatgctactcgtgctgccgtagaggaaggtatagttctaggaggt
ggttgtgcattgcttagatgcatcccagcactagatgttttaacgccagtcaatgaagat
caaaaaattggcatagaaatcattaggagaacactgaaaattccagcaatgactattgct
aagaatgcaggtgttgaaggatcattgatagttgaaaaaatcatgcaaagtccagctgag
attgggtatgatgcaatgcttggagactttgtaaatatggtagagaaaggaatcattgac
cctacaaaggttgtaagaactgccttgatggatgctgcaggtgttgcttccctcttatcc
acagcagaagctgtagttactgaaattcctaaagaggaaaaggaagtgcccgtaggcgga
atgggtggaggaatgggaggtggtatgttctaa
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