Trachemys scripta elegans (red-eared slider): 117884926
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Entry
117884926 CDS
T07347
Symbol
PRPF40A
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117884926 (PRPF40A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tst03041
]
117884926 (PRPF40A)
Spliceosome [BR:
tst03041
]
Complex A
U1 snRNP components
U1 related factors
117884926 (PRPF40A)
Complex B
117884926 (PRPF40A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
WW_2
Motif
Other DBs
NCBI-GeneID:
117884926
NCBI-ProteinID:
XP_034641853
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All DBs
Position
11:complement(26459933..26509933)
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AA seq
1051 aa
AA seq
DB search
MSGGDSAAAAASPQPLPFSLPKPPPLMQLTPGDAVRPVASAADQSPKSSRLGGRPDWPGG
KPVSLLAPLLPPRGEPEPLMPFGPSSRQQLRGRLLGRCGGGGLLNPSMRPGGVDRGSLMM
GHPGMPHYPPMGMHPMGQRPPNMPPVPHGMMPQMMPPMGGPPMGQMPGMMQSMMPGMMMS
HMSQAHMQPTVPPGVNSMDTQVGTTPPGTQITHQIVCAAQQTTTTNSSINEDPSKQKSMW
TEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKPYYYNSQTKE
SRWAKPKELEDLEAMIKAEENSSKPEESTPTSSAPAVATEITDTVTAAAATTTTSEVETA
VATTAATAIPAVTAAPEAEASTVAAVVENESTVTTTAEEQVQQTTTTTTTATAAATTIAT
PVVQEQNAEAVTNTVEETSKQEASVDVAPKKEEEDTQPVKKTYTWNTKEEAKQAFKELLK
EKRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAYKVQTEKEEKEEARSKYKEAKE
SFQRFLENHEKMTSTTRYKKAEQMFGEMEVWNAISERDRLEIYEDVLFFLSKKEKEQAKQ
LRKRNWEALKNILDNMANVTYSTTWSEAQQYLMDNPTFAEDEELQNMDKEDALICFEEHI
RALEKEEEEEKQKSLLRERRRQRKNRESFQLFLDELHEHGQLHSMSSWMELYPTISSDIR
FTNMLGQPGKTTSSSNNVESDTVFSLGSTALDLFKFYVEDLKARYHDEKKIIKDILKDKG
FLVEVNTTFEDFVTVISSTKRATTLDAGNIKLAFNSLLEKAEAREREREKEEARKMKRKE
SAFKSMLKQATPPIELDAVWEDIRDRFVKEPAFEDITLESERKRIFKDFIHVLEHECQHH
HSKNKKHSKKSKKHHRKRSRSRSGSESDDDDSHSKKKRQRSESRSVSDRSSSAESERSYK
KSKKHKKKNKKRRHKSDSPESDTEREKDKKEKERENEKDRPRQRSESKHKSPPKKRPGKD
SGNWDTSGSELSEGELEKQRRTLLEQLDEDQ
NT seq
3156 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggcggggactcggcggcggctgcggcctcccctcagccgctccccttctccttg
ccgaagccccctcccctcatgcagctgacgccgggggacgccgtccgccccgttgcctcc
gctgcggaccaatcgccgaagagctcccggttgggaggccgcccggattggccgggtggg
aagcctgtcagcctcctggccccgctgctcccgccccgcggtgagcccgagcctctaatg
ccctttggcccctcgtcgcggcagcaacttagagggaggcttcttggcaggtgtggcggg
gggggcctcctgaacccctcgatgaggccgggcggagtggatagaggatccctcatgatg
gggcacccaggcatgccgcattatccacctatgggaatgcacccaatgggccagagacca
ccgaatatgccaccagttccacatggaatgatgcctcagatgatgcctccaatgggagga
ccaccaatggggcagatgcctggaatgatgcagtcaatgatgcctggaatgatgatgtct
catatgtcccaagcgcatatgcagcctactgtaccgccaggagtaaacagtatggacaca
caagtaggcactacacctcctggaacacagatcacacatcaaatagtttgcgcagcccag
caaaccaccacaaccaacagttctataaatgaagatccttctaaacagaaatctatgtgg
actgaacataaatcaccagatggaagaacttattattataataccgaaacaaaacaatct
acatgggagaagccagatgatctcaaaacacctgctgagcaattgttatctaaatgccct
tggaaagagtacaaatctgactctggaaagccttattactacaattcccaaacaaaagaa
tcacgctgggcaaaacccaaagagcttgaagatcttgaagcaatgattaaagctgaagaa
aacagcagtaaaccagaagaatcaactccaacatcttctgctccagctgttgcaacagaa
attacagataccgtcactgctgccgccgccaccaccaccaccagtgaggttgaaactgcc
gtggctactactgcagccactgccattcctgctgtaacggctgctcctgaggctgaagct
tctacagtagctgctgttgtagaaaatgaaagtacagtaactacaacagctgaggaacaa
gtgcagcaaactactactaccaccaccactgccaccgccgctgccacaaccatcgccacc
cctgttgtacaagagcagaatgcagaagctgtcactaacactgtagaggaaacttctaaa
caggaggcttcagtggatgttgctcccaaaaaagaggaagaggacacccagccagttaaa
aaaacatatacatggaatacgaaagaagaagcaaagcaagcatttaaagaactgttgaaa
gaaaagcgtgtaccatccaatgcctcatgggagcaagctatgaaaatgatcattaatgat
cctagatacagtgcattggcaaagttgagtgaaaaaaagcaagcctttaatgcttacaaa
gtccagacggagaaagaagaaaaagaagaagcaagatcaaaatacaaagaagctaaagaa
tcctttcaacgtttccttgaaaaccatgaaaagatgacatctacaacgagatacaaaaaa
gctgaacaaatgtttggtgagatggaggtctggaatgcaatatcagaacgtgatcgtctt
gaaatttatgaagatgtcttgttctttctgtctaaaaaagaaaaggaacaagccaagcag
ttacgaaagaggaattgggaggctttgaaaaacatattggataacatggctaatgtaaca
tactctaccacttggtcggaggcccaacagtatctgatggacaatcctacatttgcagag
gatgaagaacttcagaatatggataaagaagatgcactgatttgttttgaagaacacatc
agggctttggaaaaagaagaggaagaagaaaaacagaagagtttgcttagggaaaggcga
cgacaacgtaaaaatagagaatcttttcagttatttttggatgaattacatgaacatggg
cagttacattcaatgtcttcctggatggagttgtatccaaccataagttctgacatcaga
tttactaacatgcttggtcagcctggtaagactacttcctcttccaacaatgtagaaagt
gatacagttttttcattaggatcaactgcacttgatcttttcaagttttatgttgaagat
ttgaaagcacgttaccatgatgaaaagaagataataaaggacatcttaaaggataaagga
tttctggttgaagtgaatactacttttgaagactttgttacggtcatcagttcaactaaa
agagctaccactttagatgctggaaatatcaaactggctttcaatagtttgctggaaaag
gcagaagcccgtgaacgtgagcgggagaaagaagaggctcgcaaaatgaagcggaaagag
tctgcattcaagagcatgttaaaacaagctacgcccccaattgaattggatgctgtctgg
gaagatatcagagatagatttgttaaggaaccagcatttgaagacatcactctagaatct
gaaagaaaaagaatctttaaagactttatacacgtactagagcacgagtgtcaacatcat
cattcaaagaataagaaacattctaaaaagtctaaaaagcatcacagaaaacggtctcgc
tcccgttcgggctcagagtctgatgatgatgatagccattcaaagaagaagaggcaacgc
tcagaatctagatcagtttctgatcgttcttccagtgcagaatctgagagaagttacaag
aagtcaaaaaaacacaagaagaaaaacaaaaagaggagacacaagtctgattcaccagaa
tctgatactgaacgagaaaaggataaaaaagaaaaagagagagagaatgaaaaggataga
cctagacaaagatcggaatcaaagcataaatctcctcctaaaaagcgtcctggaaaagat
tctggtaattgggatacatctgggagtgaactgagcgaaggggaattagaaaaacagaga
agaaccctcttggaacaactggatgaagatcaataa
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integrated database retrieval system
