Trachemys scripta elegans (red-eared slider): 117885178
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Entry
117885178 CDS
T07347
Symbol
BARD1
Name
(RefSeq) BRCA1-associated RING domain protein 1 isoform X1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
117885178 (BARD1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tst03019
]
117885178 (BARD1)
04121 Ubiquitin system [BR:
tst04121
]
117885178 (BARD1)
03036 Chromosome and associated proteins [BR:
tst03036
]
117885178 (BARD1)
03400 DNA repair and recombination proteins [BR:
tst03400
]
117885178 (BARD1)
Messenger RNA biogenesis [BR:
tst03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
117885178 (BARD1)
Ubiquitin system [BR:
tst04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
117885178 (BARD1)
Chromosome and associated proteins [BR:
tst03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
117885178 (BARD1)
DNA repair and recombination proteins [BR:
tst03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
117885178 (BARD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_6
Ank_4
Ank
Ank_2
Ank_5
Ank_3
BRCT
BRCT_2
Ank_KRIT1
zf-RING_5
zf-C3HC4_2
ANK_LRRK2
zf-C3HC4_4
zf-C3HC4
NIBRIN_BRCT_II
zf-RING_UBOX
Motif
Other DBs
NCBI-GeneID:
117885178
NCBI-ProteinID:
XP_034642276
LinkDB
All DBs
Position
11:complement(66145360..66214852)
Genome browser
AA seq
804 aa
AA seq
DB search
MWAALRARSGNQPAQAGRAVPAPLGMELPAGCWDSTRAALRQLEGQLRCSRCMNILKEPV
CLGKCEHVFCLACVGDCIGTECPVCHTPAWVQDVQINRQLDNMIQLCSKLRHLLGKDVTD
SAEDLFTSVGPDHETRSKKKQIKMWFSPRSRKIRCVLNNSSLQKQNQPVTNSGCINQGPS
STFDFLPSPPQEKPSKMTKEPPSHRSKKKLKKKSLADINKVWGIEKEKQKEGSGIKGETQ
DEFKEKTVTFCSQSLVLWSPEPHGTEETIGQEFVMETDLKDGRESHLEMDTQVKPTEDKD
SSAQVNTMNGFNTEKPLPSENEITPLKRGRQQSISPTISHAKRLRRNDQRADMHSVNQGV
CNSEVTAMSIVKISPITEHGTPVHISSAFKLTDGTLSKTRSSAIFQEINSPSLSKTPSTP
FTSNTHNQMGTTHSPSLLKKSPSNNTTTKRNHRGESLLHVASIKGDVSAIEHLLKNGADP
NVKDHAGWTPLHEACNHGHKKVVKLLLQHRALVNTTGYQNDSPLHDAAKNGHVSIVELLL
SHGASRDAVNIFGLRPVDYAETEKMKSVLMLPMKNESYSFSQCSEQASPGRPREGPVALL
GSSLNSEQQKSLSKLAAVLKARKCVEFNSTVTHVIIPDDPMRSTIKGMLAILAGCWVLKF
EWVKACLQSRIREQEEKYEICGGPQRGRLNQEQLLPKLFDGCYFYFLGTFNHHQKSDLIE
LVKAAGGQILVRQPKPDSDVTQTINTVAYHAQPGSDQSFCTQYIIYDVSSKYNPDKIRQG
KVWMAPSSWLIDCVMSFQLLPVTK
NT seq
2415 nt
NT seq
+upstream
nt +downstream
nt
atgtgggctgcgctgcgggctcgctccgggaaccagccggcacaggcaggcagggctgtt
cccgccccgctcggcatggaactgcccgccggctgctgggacagcacccgggccgccctg
cggcagctggaggggcagctgcgctgctcccgctgcatgaacatccttaaggaacctgtg
tgcttgggaaaatgtgagcatgtcttctgtctagcttgtgtgggtgactgtattggcaca
gaatgcccagtgtgtcacacgccagcctgggtacaagatgtgcaaataaataggcagcta
gacaacatgatccagctgtgcagcaaactgcgacatctactgggcaaagacgtcacagat
tctgcagaagacttgttcacatcagtaggtcctgatcatgaaacaagaagtaagaagaag
cagataaaaatgtggttcagtccacgcagtaggaagatcagatgtgtgctaaacaatagt
tcccttcagaagcagaatcaaccggtgactaatagtggttgcattaaccaaggcccatct
tctacttttgacttccttccttctcctcctcaagagaagccttccaagatgaccaaggaa
ccaccatcacacagatcgaagaaaaaactgaagaaaaagagtctagcagacatcaacaaa
gtgtggggtatagagaaggaaaagcagaaagagggcagtggaatcaaaggggagacccaa
gatgaatttaaagaaaagactgtgaccttttgcagccagtcattagttctatggagccca
gaaccacatggtacggaagagacaataggacaggagtttgtaatggaaaccgaccttaag
gatggaagagaatcccacttggaaatggacacacaagtaaaacccacagaggataaagat
agctctgcacaagttaatacaatgaatggttttaatacagagaaacctctgccatcagaa
aatgaaattactcctttaaagcgcggaaggcagcagtccatatcccccactatatctcat
gctaaaagactgagaagaaatgatcagcgtgctgatatgcactcagtcaaccagggtgtt
tgcaattctgaggtaactgccatgagcattgttaaaatctctccaattactgaacatgga
actccagttcatatctcttctgcatttaaacttactgatggcaccttatcaaagacaaga
agctctgcaatctttcaagaaatcaatagcccttcactttcgaaaactccctctacccca
ttcacttcaaatactcataatcaaatgggaacaacacacagcccttccctcttgaagaag
tctcctagtaataacacaactaccaaaaggaatcacagaggagagtccttgctccacgtt
gcttctatcaagggtgatgtatcagccattgaacacttactgaaaaatggagcagacccc
aatgttaaagaccatgctggatggacgccattgcacgaggcttgtaatcatgggcacaag
aaggtggtgaagctattgctacagcacagggcactggtgaacactactgggtatcagaat
gactcaccgcttcatgatgctgccaagaatgggcatgtgagcattgttgagctgttgctc
tcacatggagcctcccgggatgcagttaatatattcggtctgcgccctgtggactacgca
gaaactgaaaagatgaagtctgtgctaatgctaccaatgaagaacgaatcatattcattt
agtcaatgctcagaacaagcaagcccaggccgccctagagaaggacctgttgctctactg
ggaagcagcctcaattcagagcaacaaaaatcactgagcaaactcgcagcagttctgaag
gctagaaaatgtgttgagtttaacagcacagtgactcacgtcattatccctgatgatcca
atgcgaagtactatcaaagggatgctggccattctggctggatgttgggtcctgaaattt
gagtgggtgaaggcatgtttgcaaagcagaattcgtgaacaagaggagaagtatgaaatc
tgtggtggcccacaaagaggcagactcaaccaagaacagctgctgcctaagttgtttgat
ggttgctacttctattttttgggaactttcaaccaccaccagaagagtgacctcatagag
ctggttaaagcagcaggaggacaaatccttgttaggcagccaaagccagatagcgacgtg
acacagaccatcaacacagtggcataccatgcccaacctggttctgatcagagtttctgc
acacaatacattatctatgatgtgtcttctaagtacaacccagataaaattcgccaaggc
aaagtctggatggccccctccagctggctcatagactgtgtgatgtcatttcagctgtta
cctgttacaaagtga
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integrated database retrieval system
