Trachemys scripta elegans (red-eared slider): 117885259
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Entry
117885259 CDS
T07347
Symbol
SF3B1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117885259 (SF3B1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tst03041
]
117885259 (SF3B1)
03036 Chromosome and associated proteins [BR:
tst03036
]
117885259 (SF3B1)
Spliceosome [BR:
tst03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
117885259 (SF3B1)
Complex B
117885259 (SF3B1)
Complex C
U2 SnRNP specific factors
117885259 (SF3B1)
Chromosome and associated proteins [BR:
tst03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
117885259 (SF3B1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
DUF2298
Motif
Other DBs
NCBI-GeneID:
117885259
NCBI-ProteinID:
XP_034642417
LinkDB
All DBs
Position
11:complement(54098285..54140141)
Genome browser
AA seq
1301 aa
AA seq
DB search
MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA
TELEDDDDDYSSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPQKIADREDEYKK
HRRMMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGEL
KVVNGTSSQPPSKRKRRWDQTADQTPGTTPKKLSSWDQAETPGHTPSLRWDETPGRAKGS
ETPGATPGSKIWDPTPSHTPAGAATPGRDTPGHATPGHGGATSSARKNRWDETPKTERDT
PGHGSGWAETPRTDRGGDSVGETPTPGASKRKSRWDETPASQMGGSTPVLTPGKTPIGTP
AMNMATPTPGHIMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVLPPPAGYVP
IRTPARKLTATPTPLGGMTGFHMQTEDRTMKSVNDQPSGNLPFLKPDDIQYFDKLLVDVD
ESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLMSPT
LEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKA
AGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQARHT
GIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPYGIES
FDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQSPDEE
MKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVELANK
VGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAFQEQ
TTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAVVMK
TCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRLTPI
LKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGY
IAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNV
QNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVYGFG
CEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHPARKVRD
VYWKIYNSIYIGSQDALIAHYPRIYNDEKNTYIRYELDYIL
NT seq
3906 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaagacccacgaagatattgaagcacagattcgagaaattcaagga
aaaaaggctgcccttgatgaagctcagggagtaggccttgattctacaggatactatgat
caagagatttatggtggcagtgacagcaggtttgctggatatgtgacttctattgcagca
actgaactagaagatgatgatgatgactactcctctacaagtttgcttggtcagaagaag
ccagggtaccatgctccagtggcattacttaatgatataccacagtcaactgaacagtat
gatccctttgctgaacatcgtccacagaagattgcagatagagaagatgaatataaaaag
cacagacggatgatgatcatttctcctgagcgtcttgatccttttgcagatggagggaag
acacctgatcctaaaatgaatgccagaacatatatggatgttatgcgtgaacagcattta
acaaaagaagagagggaaattaggcaacaactagcagaaaaagctaaagctggggaactt
aaagtcgtcaatggcacctcctcccagccaccttcaaaacgcaaacggcgttgggatcaa
acagctgaccagactcctggtactactcctaaaaaactatccagttgggatcaagcagag
acccctggacatactccttctttgaggtgggatgaaactcctggccgtgcaaagggtagt
gagactcctggagcaaccccaggctcaaaaatatgggatcctactcccagtcatacacca
gcaggagctgcaacccctggacgggacacacctggtcatgcaactccaggccatggaggt
gcaacttccagtgcacgtaaaaatcgatgggatgagacccccaaaacagaaagagataca
ccgggacatggtagtggatgggctgagactcctcgaacagatcgaggtggtgattcagtt
ggtgaaaccccaactcctggagcaagtaaaagaaagtcacgttgggatgaaacacctgct
agccaaatgggtggtagtactcccgttttgacacctggcaaaacaccaattggtacacca
gccatgaatatggcaacccctacgccaggtcatataatgagcatgactcctgaacagctg
caggcatggcgctgggaaagagaaatagatgagagaaaccggccactatctgatgaagaa
ttggatgccatgttcccagagggatataaggttcttccccctccagctggttatgtgcct
attcgtactccagctcgcaaacttacagcaactcccacaccattgggtggtatgactgga
ttccatatgcaaacagaagataggaccatgaagagcgttaatgaccaaccatctggaaat
cttccattcctaaaaccagatgatattcaatactttgataaactattggttgatgttgat
gaatcaacacttagtccagaagaacagaaagaaagaaaaataatgaaattgctcttgaaa
ataaagaatggtacacctccaatgagaaaagctgctttgcgtcagattaccgataaagct
cgtgaatttggagcaggtccgctgtttaatcagattctacctctgctgatgtcaccaaca
cttgaagatcaagaacgtcacttgcttgtcaaagttattgatagaatcttatacaaactg
gatgatttggtccgaccatatgtacataagattcttgtggtcattgaaccactgctgatt
gatgaagactactacgcgagagtggaaggcagagaaattatatcaaacttggctaaggct
gctggtttggctacaatgatctccaccatgcgacctgatattgataacatggatgagtat
gtccgaaatacaacagctcgagcctttgctgttgttgcctctgctttaggcattccttct
ctgttgcccttcttgaaagctgtatgtaagagcaaaaaatcctggcaagctaggcacact
ggcatcaagattgtacagcaaattgctattcttatgggctgtgctatcttgcctcatctc
agaagtttggttgaaatcattgaacatggtctggtggatgagcagcagaaagtgcgcacg
atcagtgctttggcgattgctgctttggctgaggcagctactccttatggtattgaatca
tttgactccgttctaaagcccttgtggaagggcatacgtcagcacagaggaaagggtctg
gctgccttcttgaaagctattgggtaccttatccctcttatggacgctgagtatgccaac
tactataccagagaagtaatgctaatccttatccgagagttccagtctcctgatgaagaa
atgaaaaaaattgtgttaaaggtagtaaagcagtgttgtggtacagatggcgttgaagca
aactacattaaaacagagattctgccgccgtttttcaaacacttttggcagcacagaatg
gcactggacagacgaaattacagacagttggttgataccacagtggagctggcaaacaaa
gtcggagcagcagaaattatttccaggattgtggatgatctgaaagatgaggctgaacag
tacagaaaaatggttatggaaacaattgaaaaaataatggggaacctgggtgcagcagac
attgaccataaactagaagaacaacttattgatggtatcctgtatgccttccaggaacag
accacagaggactctgtgatgttgaatggctttggcacagttgttaatgctcttggcaaa
cgagttaaaccatacttgccccagatctgtggtacagttttatggcgtttgaacaacaaa
tcagccaaagttaggcagcaggctgctgacctgatctcacgtactgcagttgtcatgaag
acttgtcaagaggaaaaactgatgggacacttgggtgttgtcctgtatgagtatctgggt
gaggaataccctgaagtattaggcagtatacttggagcacttaaagccattgtgaatgtt
ataggtatgcacaagatgacgccaccaattaaagacctgctgccaagactcacacctatc
ttgaaaaacagacatgagaaagtacaggagaattgtatcgacctagttgggcgtattgct
gacaggggtgcagaatatgtttctgcaagggaatggatgaggatctgttttgaactgctg
gagttgttaaaagctcacaagaaagctatccgacgagccacagtgaacacttttggttat
attgcaaaagctattggaccccatgatgtgttggctacactgctaaataacctgaaagta
caggaaagacagaacagagtatgtactacagtagcaattgctattgtagctgaaacatgc
tcacctttcacagtactgcctgctctgatgaatgaatacagagttccagaactgaatgtc
cagaatggtgtattaaaatctctttcttttctgtttgaatacattggagagatgggaaaa
gattacatttatgctgttacaccattgcttgaagatgctttaatggacagagaccttgta
cacagacaaacagccagtgctgtggtgcagcatatgtctcttggagtatacggatttggc
tgtgaggattctctgaatcacttgttaaattatgtgtggcccaatgtgtttgagacatct
cctcacgtcattcaggcagttatgggtgcactggagggcctaagagttgccattggaccg
tgtagaatgctgcaatattgtttacagggtttgtttcaccctgccaggaaagtcagagat
gtgtattggaagatttataattcaatctatattggctcacaagatgccctgatagcacat
tatccaagaatctacaatgatgaaaagaacacctacattcgttatgaacttgactacatc
ttataa
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integrated database retrieval system
