Trachemys scripta elegans (red-eared slider): 117885790
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Entry
117885790 CDS
T07347
Symbol
CSTF1
Name
(RefSeq) cleavage stimulation factor subunit 1 isoform X1
KO
K14406
cleavage stimulation factor subunit 1
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
117885790 (CSTF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tst03019
]
117885790 (CSTF1)
Messenger RNA biogenesis [BR:
tst03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
117885790 (CSTF1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
CSTF1_dimer
ANAPC4_WD40
NBCH_WD40
PROPPIN
Ge1_WD40
Frtz
Motif
Other DBs
NCBI-GeneID:
117885790
NCBI-ProteinID:
XP_034643117
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All DBs
Position
12:complement(12631147..12647284)
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AA seq
489 aa
AA seq
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MAARTGVRRMSGRRVPSACDRRPLPRGLSNLGSPAPEPRPLRLPFLETEAPARHSLLTMY
RTKVSLKDRQQLYKLIISQLLYDGYINIANGLINEIKPQSVCAPSEQLLHLIKLGMENDD
SAVQYAIGRSDTVAPGTGIDLEFDADVQTMSPEASEYETCYVTSHKGPCRVATYSRDGQL
IATGSADASIKILDTERMLAKSAMPIEVMMNETAQQNMENHPVIRTLYDHVDEVTCLAFH
PTEQILASGSRDYTLKLFDYSKPSAKRAFKYIQEAEMLRSISFHPSGDFILVGTQHPTLR
LYDINTFQCFVSCNPQDQHTDAICSVNYNASANMYVTGSKDGCIKLWDGVSNRCITTFEK
AHDGAEVCSAIFSKNSKYILSSGKDSVAKLWEISTGRTLVKYTGAGLSGRQVHRTQAVFN
HTEDYVLLPDERTISLCCWDSRTAERRNLLSLGHNSIVRCIVHSPTNPGFMTCSDDYRAR
FWYRRSTTD
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atggcagcgaggacaggtgtgaggaggatgtcaggccgtcgtgttccctcagcgtgtgat
aggcgtccgcttccacggggcctgagtaacttgggctcccccgctcctgagccacggcca
ctgcggctgcctttccttgagactgaggcacccgcaaggcattccttgctcacaatgtat
agaacaaaagtaagcttgaaagatcgtcaacaactttacaaactgattattagtcaattg
ctgtatgatggatacataaacattgccaatggcctgataaatgagataaaaccacaatca
gtctgcgcaccctctgaacaactgctgcatctgattaaactaggaatggagaatgatgat
agcgctgttcaatatgcaattggacgctccgacacagtagctccaggaacagggattgac
ttagaatttgatgcagatgtccagactatgtcccccgaggcttctgaatatgagacctgt
tacgtcacatctcataaaggaccatgtcgcgtagctacatacagcagagacggacagtta
atagctacgggatctgctgatgcctcaataaaaattcttgatacagagagaatgttggca
aaaagtgctatgcccatcgaggtcatgatgaatgagacagcacagcagaatatggaaaat
catcctgttattcggactctatatgatcatgtggatgaggttacatgtttagctttccat
ccaacagaacagatcctggcatctggttcaagggactatacgcttaaattgttcgactat
tcaaaaccttctgccaaaagagccttcaagtatatccaggaagcagaaatgttacgctcc
atctcttttcatccttctggcgacttcatacttgttggtacccagcaccctaccttacgg
ctttatgatatcaatacattccagtgttttgtgtcttgcaatcctcaagatcaacacacc
gacgctatatgttcagtaaactataatgcaagtgctaacatgtatgtgacaggaagcaag
gatggatgcatcaaattatgggatggtgtttcaaatcgatgtatcactacttttgagaaa
gcacatgatggggctgaagtctgttctgccatcttttccaaaaattcaaagtacatcctg
tcaagtggaaaagattctgtagctaaactatgggagatatccacaggtcgaacgctggtc
aaatatacaggagctggtttgagcggacgacaagtacacagaacacaggcagtctttaac
cacacagaggactatgtgttacttcctgatgaaaggaccataagtctctgctgctgggac
tcaagaactgcagaacggcgaaatcttctgtcattggggcataacagcattgttcggtgt
attgttcattctcctaccaatcctggtttcatgacatgcagtgatgactacagagctcga
ttttggtaccgaaggtcaaccacagactaa
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