Trachemys scripta elegans (red-eared slider): 117885797
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Entry
117885797 CDS
T07347
Symbol
SOGA1
Name
(RefSeq) protein SOGA1 isoform X1
KO
K27704
microtubule cross-linking factor
Organism
tst
Trachemys scripta elegans (red-eared slider)
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
tst03036
]
117885797 (SOGA1)
Chromosome and associated proteins [BR:
tst03036
]
Eukaryotic type
Centrosome formation proteins
Microtubules and associated factors
Microtubule-associated proteins
117885797 (SOGA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SOGA
SOGA1-2-like_CC
KASH_CCD
TSC22
Motif
Other DBs
NCBI-GeneID:
117885797
NCBI-ProteinID:
XP_034643145
LinkDB
All DBs
Position
12:complement(29645649..29733425)
Genome browser
AA seq
1706 aa
AA seq
DB search
MEAAEAEPSQPVSPAPAPPPEKKKLQRAPSPARPKDVPGWSLAKSRRGSHPGSPASLCGK
QGAGPGNSRRPGGGKDGRPEKKGKQPQPAGGRGSGKGVPGRAGAKAKGRCRGPAGEEPPP
PLSLTDSSSEGSDCSASEEAKLLSLELGLSSSDPESPALLSGQGISPPPDEPSAASMASS
RLQLSTSLAFSDLTEELLDAGQEGLARELEELRSENDYLKDEIEELRAEMLEMRDVYMEE
DVYQLQELRQQLDQASKTCRILQYRLRKAERRSLRVAQTGQVDGELIHSLEQDVKVAKDV
SVRLHNELEVVEKKRIKLEEENEDLRQRLIETELAKQVLQNEMDKLRENSLKKRGSRSVG
KTEKKPSVQEDSADLKCQLHFAKEESALMCKKLTKLAKENDSMKEELVKYRSLYGDLESS
LSIEELADSPHSREAELKAHLKLVEEEANILSRRIVELEVENRGLRAEMDDMKGQGDREL
MGQDIRFAFSSTCCGDSGESQVELRRHLQFVEEEAELLRRSLMELEDQNKLLMNELNKYK
SDHDLDITLSEDSCSVISEPSQEELATAKVQISELSGKVKKLQYENRVLLSNLQRCDLAS
CQTTRPMMETDAEAGDSADCIPTPLWREVPVGGENDAKDRPERGPGNGNGKSQDNSPTRL
FKSKDLETLLGIRDQAALVSKAIDVLISDSNGFTSSLKVCLDNDCMDLVLSEPVDNSEST
SDSKLINMIFVRLRVLQQELNSFMRKVDHIGDCWKEQMDPFSFLPSCGPQDSPKGALRKE
HSSDFQQPDFRDGPDWDAVGSRPPDLYRSNNTMDMDSNVKLPRNYKPYRSDENDSYVTEI
KELQLVLAEANESLRGLQEQLTQERQLRKEELENFSQKICQLREDQQKALLRREFELQSL
SLQRRLEQKFWSQEKNLLVQESQQFKQNFLLLFMKLKWFLKRWRQGKILHSEGDGFLEVN
SMKELYLLIEEEELTPQQQADNKTCAGDTWTQNTPNEYVKTLADMKVILKELCMELREER
QGMNELQQQFAKAKAAWEVERTELKCHIAQLESKVGKGVPERAPSDWKVALKREREEHQH
LLAESYSAVMDLTKQLQISEKNWNQEKLELLDRFKDEQQQAEQQVKELQNKINQLQKGAD
RWAVEKQGSNWKETLNEKITDKETVSETDPKGASLKRTKSVSSMSEFESLLDCSPYLPGK
TSPVIPDHARSKVSPATQLLPNGITDPAGVHPKNCTYVTTEQPAPESLAKEKPGISSWDY
SRANKLSGQDPAQKQMQRSYTAPDKTGIRIYYSPPVVRRLETPLIHNKEGKIMTEPGFLF
TMAKPTELEESDHSENTYSRWLCNFSKQHRELLDSRSADKAGPSGPRFPASLHDFEISGN
MSDDMKEITNCVRQAIRSSSLERKVKSTSSQTTGLTTIGTQTIQMVSVGLQTDTPRGNLH
SKSWSPRSSSLMSVRSKQISSSLDKVHSRIERPCCSPKYGSPKLQRRSSSKLDNSKDRSL
WNLHQSKQNGSAWARSTTTRDSPVLSNINDGLSSLFNVVEHSGSTESIWKPGCPESKAKP
EAPKYGIVQEFFRNVCGRAQSPTSAPEKKESPGDDGTKKQDHSQPATCHPSENVSRSLNK
KLPKQSSSEEPKASSPNQGSKDGTPRDLDITSVIANEDTACDCSSQSLTSCFARPSRSAV
RHSPSKCKLHPSDPSRAEEKAGPLSE
NT seq
5121 nt
NT seq
+upstream
nt +downstream
nt
atggaagcggccgaggcggagccgagtcagcccgtcagcccggccccagcgccgccgcct
gagaagaagaagctgcagcgggcgccatccccggccagacccaaggatgtgcccggctgg
tccctggccaagagccggcgcggcagccaccccggctcgccggcctcgctctgcgggaag
cagggcgcgggacccgggaactcgcggcggccgggcgggggcaaagacgggcggcccgag
aagaaggggaagcagccgcagcccgccgggggccggggctccgggaagggggttccgggc
cgggccggggccaaggcgaaggggcggtgccgggggccagccggggaggagccgccgccc
cccctgagcctgacggacagcagctcggagggctcggactgtagcgcctcggaggaggcc
aagctgctctcgctggagctggggctcagcagcagcgatcccgagtccccggccctgctc
tccggccagggcatctcgccgccgcccgacgagccctccgccgcctccatggccagcagc
cgcctgcagctcagcacctcgctggccttctccgacctcaccgaggagctgctggacgcg
gggcaggagggcctggcgcgggagctggaggagttgcgctccgagaacgactatctcaag
gatgagatcgaagagctgcgtgcagagatgctggagatgagagacgtctacatggaggag
gatgtctaccagctgcaagagctccggcagcaactggaccaggccagcaagacctgtcgc
atcctgcagtatcggctgcgcaaggcggagcgccgcagcctgcgcgtggcacagactggg
caggtggacggcgagctcatccacagcctggagcaagacgtcaaggtggccaaggatgtc
tctgtgcggctccacaacgagctggaggtggtggagaagaagaggatcaagctggaggag
gagaatgaagacctgcgccagaggctgatcgagacagagctggccaagcaggtgctgcag
aacgagatggacaaactgcgtgagaattcgttgaagaaaaggggatctcgttctgtgggg
aagactgaaaagaagccttcagtccaggaggacagcgcagacctaaagtgtcagctgcat
tttgcgaaagaggagtccgctctgatgtgcaagaaactaacgaagttagccaaggagaat
gacagcatgaaggaggagctggtgaaataccgctccttgtacggggacttggagagctct
ttgtccatagaggagctggcggactcccctcattcgcgagaggcagaactgaaggcccat
ctgaagctcgttgaggaagaagccaacatcctgagtcggaggatcgtggagctcgaggtt
gaaaaccgtgggctgagggcagagatggatgacatgaagggacaaggtgacagagagctg
atggggcaggacattcggtttgctttctcctccacctgctgtggggactctggggagagc
caggtggagctaaggcgacatctgcagtttgtggaagaggaggcagagctactgaggagg
tcgctgatggagctggaagaccaaaacaagcttctcatgaatgagctgaacaagtacaag
tcggaccacgacctggacattaccctgtcggaggatagctgctcggtgatcagcgagccg
tcccaagaggagctggccacggccaaggtgcagatcagcgagctcagcggcaaggtgaag
aagctgcagtacgagaaccgcgtgctgctctctaaccttcagcgctgcgacttggcctcc
tgccagaccacgaggccgatgatggagaccgacgctgaggctggcgattctgcggactgc
attccgacccctctctggagagaggtgcccgttggaggagagaatgatgccaaggaccgc
cctgagagagggcccggcaacggcaacgggaagtctcaggacaacagccccacccggctg
ttcaaatccaaggacttggagactctgcttggcatccgggaccaggccgcacttgttagc
aaagccatcgacgtcttgatttcggactccaatggcttcacctccagcctgaaggtgtgt
ctggacaacgactgcatggacctggtgctgagcgagccggtggataacagtgaaagcacc
agtgactccaagctaatcaacatgatctttgtgaggctccgtgtcctgcagcaggagctg
aactccttcatgaggaaggtggatcacattggggactgctggaaagagcagatggaccct
ttctccttcctgcccagctgcggcccccaggactctcccaaaggagcactgcgcaaagag
cacagctccgacttccagcagccagactttagggacggcccggactgggacgctgtgggg
agccggccccctgacctgtaccgcagcaacaacaccatggacatggactccaatgtgaaa
ctccccaggaactacaagccctaccgatctgacgagaacgactcctatgtcaccgagatc
aaggagctgcagctggtgctggctgaagccaacgagagcctgcggggcctgcaggagcag
ctcacccaggagaggcagctgaggaaggaggagctggagaacttctcccagaagatctgc
cagctgcgggaagaccagcagaaggctctcctgagacgggagtttgagctgcagagcctg
agcctccagaggcggctggagcagaagttctggagccaggagaagaacctcctggtgcag
gaatcccagcagttcaagcagaatttcctgcttctcttcatgaagctcaagtggttcctc
aaacgctggagacaggggaagatccttcacagtgagggcgatggcttcttggaggtgaac
agcatgaaagagctgtacctgctgatcgaggaggaggagctcaccccacagcagcaggcc
gataacaagacatgtgccggagacacctggacccagaacacgcccaatgagtatgtcaag
accctggcagacatgaaggtgatcctgaaggagctgtgcatggagctgcgcgaggagagg
cagggcatgaatgagctgcagcagcaatttgccaaggccaaggctgcctgggaggtagag
cggactgagctcaagtgccacatcgcccagctggagtccaaggttgggaaaggggtcccg
gagcgagctccatcggactggaaagtggctctgaagagggagcgagaggaacaccagcac
ctcctggccgagtcctacagcgcggtcatggacctcaccaagcagcttcagattagtgag
aagaactggaaccaggagaagctggagctgctggacaggttcaaggacgagcagcagcag
gcagagcagcaagtgaaagagctgcagaacaaaatcaaccagctgcagaagggagccgac
cggtgggccgtggagaagcagggcagcaactggaaagagacgctcaacgaaaagatcacc
gacaaagagaccgtttctgaaacagaccccaagggagccagtttaaaaaggacgaagtct
gtttcctcgatgtctgagttcgaaagcttgctcgactgttctccctaccttccaggcaag
accagccctgtgatccctgaccacgcacgaagcaaggtgtccccagccacacagctactg
cctaatggcataacagaccctgcaggagtccaccccaagaactgtacatatgtgactaca
gagcaacctgcccctgagagcctggcaaaagagaagccaggcatttcctcatgggattat
tcccgggcaaacaagctctctgggcaggatccagcccagaagcaaatgcagaggagctac
acggcaccagacaagaccgggatccgcatctattacagccctccagtggtgcgaagactg
gagacgccgctaatccacaacaaggaggggaagatcatgactgagccgggcttcctgttc
acaatggccaagccgacagaattggaggaatccgaccactcggagaacacgtacagcagg
tggctgtgcaacttctccaagcagcaccgcgagctgctggacagccgcagtgctgacaag
gctgggccctccggccccaggttcccagcctccctgcacgattttgagatttccggaaac
atgagcgacgacatgaaagagatcaccaactgcgtgcggcaggccatccgctccagctcg
ctggagaggaaggtgaagagcacctccagtcagaccacggggctgacaaccatcggcacc
cagaccattcagatggtgagtgtcggcctgcagacagacacgccccggggaaacctccac
agcaagagctggtccccacgcagctcctccctcatgtctgtgcgtagcaaacagatttct
tcgtctctggacaaagtccactccaggatcgaacggccctgttgttctcccaagtatggc
tccccgaagctccagagacggtcttcctccaagctcgacaattcgaaggacagaagcctg
tggaaccttcatcagagtaagcaaaatgggtcggcctgggctaggtcgaccacaaccaga
gacagcccggtcctcagtaacatcaacgatggcctgtccagcttgttcaatgttgtggag
cattctgggagtacagagtccatctggaaaccaggctgtccagagagcaaagccaagcca
gaagccccgaaatatggcatcgtgcaagagttcttcaggaatgtgtgcgggagggctcag
agccccacttctgccccggagaagaaagaatcaccgggagatgatggcaccaaaaagcag
gatcactcccagccagccacctgccatccatctgaaaatgtctcccggagcttaaacaag
aaactcccgaagcaaagcagcagtgaggagcccaaggcgtcttccccaaaccaggggagc
aaagatgggaccccaagggacctggacataacatctgtgatagccaatgaggacacagca
tgcgactgcagctcccagtccctcacctcctgcttcgcccgcccctcccgctcagctgtc
cggcactccccttccaagtgcaagctgcatccctctgaccccagccgggcggaggagaag
gcagggcctctgagtgagtga
DBGET
integrated database retrieval system
