Trachemys scripta elegans (red-eared slider): 117886009
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Entry
117886009 CDS
T07347
Symbol
CHD8
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 8 isoform X1
KO
K04494
chromodomain helicase DNA binding protein 8 [EC:5.6.2.-]
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
117886009 (CHD8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
tst03036
]
117886009 (CHD8)
Chromosome and associated proteins [BR:
tst03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
117886009 (CHD8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HTH_CHD6-9
Helicase_C
BRK
SNF2-rel_dom
HDA2-3
HTH_Hrp3
MUN
Myb_DNA-bind_7
DDRGK
Motif
Other DBs
NCBI-GeneID:
117886009
NCBI-ProteinID:
XP_034643526
LinkDB
All DBs
Position
12:39809367..39820934
Genome browser
AA seq
1438 aa
AA seq
DB search
MMLRRLKEDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLSKGAGHTNMPNLLNT
MMELRKCCNHPYLINGAEEKILAEFRDSCPHYVPHDLHLQAMVRSAGKLVLIDKLLPKLK
AGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFL
LCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYERE
MFDKASLKLGLDKAVLQSMSGREGSIAGIQQFSKKEIEDLLRKGAYAAIMEEDDEGSKFC
EEDIDQILLRRTTTITIESEGKGSTFAKASFVASENRTDIALDDPNFWQKWAKKADLDLD
LLNSKNNLVIDTPRVRKQTRHFSTLKDDDLVEFSDLESEDEERPRSRRHDRHHPLHHSYG
RTDCFRVEKHLLVYGWGRWREILSHGRFKRRLSERDVETICRAILVYCLLHYRGDENIKG
FIWDLISPAENGKAKELQNHSGLSIPVPRGRKGKKVKSQSTFDVHKAEWIRKYNPDTLFQ
DESYKKHLKHQCNKVLLRVRMLYYLRQEVIGDQASKVLAGAGASEIDIWFPLVEQLEVPT
GWWDAEADKSLLIGVFKHGYEKYNTMRADPALCFLEKAGRPDDKAIAAEHRLDVGEGAEF
DKDCEDPEYKPLSGPAKEQDDEGDPLMLLDEEISVVDGDEGQPAQPGHLFWPPGSVLTAR
LRRLITACQRSYKQEQLKMEAAERGDRRRRRCEAACKLKEMVRREKQQRWTRREQSDFYR
VVSSFGVEYDPDTLRFHWGRFRALARLDRKTDESLTKYFHGFVAMCRQVCRLPPAASDES
PDPTLFIEPISEERASRTLYRVDLLRRLREQVLCHPLLQERLALCQPPGPELPTWWECGR
HDRELLQGAARHGLSQTDTTIMQDPDFSFLAARLSYLHGRAGTPQPPAGGAGAATASPLP
PTPELPAPLLPVLLPKPDSADDSDSELDLGKLSPSTSGSSSSCSEDSDDERGTMPCGGKL
SEEESLLSLPTSQEGDSPQPTAPELLLQERQRAHEWPKDRVLINRIDLVCQAVLSGKWPS
SQRSQELCGGHGGDLAPRLPGDYASSPAPHACPQDEAPALYTRLRHSPEEKEFTVQIKDE
EGIKLTFQKHKLIPNGALHERHPHSLGHKKSSKKLVELELQCLEGLRGPDIDLEARIPVV
HKANGTLLVGEAAPRRADLEAWLHAHPDFAIDPRFLAYMEDRRKQHKWHRCKKTGTVELS
CLPGLEQGPGASGSHNGKKGFMTDPVMSRLLPGPLESEGGLKQLRGRRAGVELSKMVSLM
GGAGRSQLGAMGPLSLHSPFQPGPAPGSSLPYMPFPTASSSGSLLHPGLGHGSYPPGPHV
HLGSLGHPQPDEEEEDEEDEIDDLSQGYASSEQDFSLLDDPMMPANSDSSDGANDGGD
NT seq
4317 nt
NT seq
+upstream
nt +downstream
nt
atgatgttgcggcggttgaaggaggatgtggagaagaacctggcgcccaagcaggagacc
atcatcgaggtggagctgaccaacatccagaagaaatactaccgggccatcctggagaag
aacttctccttcctgtccaagggggcggggcacaccaacatgcccaacctgctcaatacc
atgatggagctccgcaagtgctgtaaccacccctatctcatcaacggcgcggaggagaag
atcctggctgagttccgggactcctgcccgcactacgtgccccatgacctgcacctccag
gccatggtgcgctcagccggcaagctggtgctcattgacaagctgctgcctaagctcaag
gcgggcggccacaaggtgctgatcttctcacagatggtgcgctgcctcgacatcctggag
gactacctcatccagaggcggtacctgtacgagcggattgacggacgggtgcgggggaac
ctgcggcaggctgctatcgaccgcttcagcaagcctgactcggaccgcttcgtcttcctg
ctctgcacccgggcgggcggcctgggcatcaacctcacggcagccgacacctgcatcatc
ttcgactcggactggaacccccagaatgatctgcaggcacaggcgcgctgccaccggatc
ggtcagagcaaggcggtgaaggtctatcgcctcatcacccgcaactcctatgagcgtgag
atgttcgacaaggccagcctcaagctggggctggacaaggccgtgctgcagtccatgagc
gggcgcgagggcagcatcgccgggatccagcagttctcaaagaaggagatcgaggacctg
ctgcgcaagggggcctatgctgccatcatggaggaggacgatgagggctccaagttctgc
gaggaggatattgaccagatcctgctgcgccgtacgaccactatcaccattgagagtgag
ggaaagggctccaccttcgccaaggcaagcttcgtggcctcggagaaccgcacagatatc
gccctggacgaccccaacttctggcagaaatgggcaaagaaagcagacctggacctggac
ctgctcaacagcaagaataacctggtgattgacacgccgcgcgtgcggaagcagacccgg
cacttcagcaccctgaaggacgacgacttggtggaattttcggacctggagagcgaggat
gaagagcggccacgctccaggcgtcatgaccgccaccaccccctgcaccactcatacggg
cgtacggactgcttccgcgtggagaagcacctgctggtctacggctggggccgctggcga
gagatcctgtcccacgggcgattcaagcggcgcctgtcggagcgggacgtggagacaatc
tgccgcgccatcctggtctactgcctgctgcactaccgaggcgacgagaacatcaagggt
ttcatctgggacctgatcagcccggctgaaaacggcaaggccaaggagcttcagaaccac
tcgggcttgtcaatccccgtgccccgggggcgcaagggcaagaaggtgaagtcccagagc
acatttgacgttcacaaagccgagtggatccgcaagtacaaccccgacacgctcttccag
gacgagagctacaagaagcacctcaagcaccagtgcaacaaggtgctgctgcgagtgcgg
atgctgtactacctgcgccaggaggtgattggggaccaggccagcaaggtgctggctggt
gctggtgcaagcgagatcgacatctggttcccgctggtggagcagctggaggtgccaacc
ggctggtgggatgctgaggccgacaagtccctgctcattggagtcttcaagcatggctac
gagaagtacaacactatgcgagctgaccccgctctctgcttcctggagaaggccgggcgc
cccgatgacaaggccatcgccgcagagcaccgcctggatgtgggagagggggcggagttt
gacaaagactgcgaggaccccgaatacaaaccgttgtccgggccggccaaggagcaggac
gatgagggtgatcccctgatgctgctggacgaggagatctcggtggtggatggggatgaa
ggccagccggcccagcccgggcacctgttctggccgccgggctcagtgctcacggcccgc
ctgcggcgcctcatcaccgcctgccagcgcagctacaagcaggagcagctgaagatggaa
gccgcagagcggggggaccggcggcgccggcgctgcgaggcagcttgcaagctcaaggag
atggtgcgccgggagaagcagcagcggtggacgcgtcgggagcagtcggatttctaccgc
gtggtgtccagtttcggggtggagtacgaccctgacacgctgcgcttccactggggccgc
ttccgggcgctggcccggctcgaccgcaagacagacgaaagcctcaccaagtatttccat
gggtttgtggccatgtgccggcaggtgtgccggctgcccccagccgccagcgacgagtcc
ccggaccccacgctgttcatcgagcccatctcggaggagcgggcctccaggacactgtac
cgcgtggacctgttgcgccggctgcgggaacaggtcctgtgccacccgctgctgcaggag
cgcctggccctgtgccagccaccgggccctgagctgcccacctggtgggagtgcgggcgg
catgacagggagctgctgcagggggcagcacgccatgggctgagccagaccgacaccaca
atcatgcaggaccccgacttctcctttctggccgcccgcctcagctacttgcatggccgg
gctgggacgcctcaaccccctgcagggggtgctggagcagccacagcctcccccctgccc
cccacgcccgagctgccagccccgctgctgcctgtgcttctccccaagcctgactcagct
gatgactcggactcggagctcgacctggggaagctctcgccctccacatccgggtcatcg
tcgtcctgctcagaggacagcgatgatgagaggggcaccatgccatgcggggggaagctg
tccgaggaggagtccctgctctccctgcccacttcccaggagggtgactctccccagccc
actgccccggagctgctgctgcaggagcggcagcgtgcccacgagtggcccaaggaccgg
gtgctcattaaccgcatcgacctggtgtgccaggctgtgctgtcggggaagtggccctca
agtcagcgcagccaggagctctgcggtggccatgggggagaccttgccccccggctgcca
ggtgactacgccagctcgcctgctccccatgcctgcccccaggatgaagcgccagccctg
tacacccggctccggcacagccccgaggagaaggagttcactgtgcagatcaaggacgag
gaggggatcaagctgacgttccagaagcataagctgatccccaatggcgctctacatgag
cggcacccgcactcgctaggccacaagaagagcagcaagaagctggtggagctggagctg
cagtgcttggaagggctgcggggccctgacatcgacctggaggcgcggatcccggtggtg
cacaaggcgaatgggacattgctggtgggggaggcggccccacgccgagctgatctggag
gcctggctacatgcacaccctgactttgccattgacccccgcttcctggcttacatggaa
gatcggcgcaagcagcacaagtggcaccggtgtaaaaagacaggcacagtagagctgagc
tgcctgccggggttggagcagggccctggggccagtggctcccacaacggcaagaagggc
ttcatgactgaccctgtgatgagccggctgttgccagggccattggaatccgaggggggc
ctgaaacagctacggggtcggcgggctggtgtggagctgtccaagatggtatccctgatg
ggtggggctgggcggagccagctgggggctatggggcccctgtctttacacagtcccttc
cagcctggaccagcccctggctcttccctgccctatatgcccttccctacagcctcttcc
tctggatccctgctgcacccagggttgggccatggcagctatcccccaggcccgcatgtg
cacctgggctccctggggcacccgcagcctgacgaggaagaggaggatgaggaggatgag
atagatgacttatctcagggctatgccagttcagaacaggacttctccctgctcgatgac
cccatgatgccagccaactcggactccagtgatggtgctaatgacgggggcgactga
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integrated database retrieval system
