KEGG   Trachemys scripta elegans (red-eared slider): 117886078
Entry
117886078         CDS       T07347                                 
Symbol
RAE1
Name
(RefSeq) mRNA export factor
  KO
K14298  mRNA export factor
Organism
tst  Trachemys scripta elegans (red-eared slider)
Pathway
tst03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:tst00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    117886078 (RAE1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tst03019]
    117886078 (RAE1)
   03036 Chromosome and associated proteins [BR:tst03036]
    117886078 (RAE1)
Messenger RNA biogenesis [BR:tst03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     117886078 (RAE1)
Chromosome and associated proteins [BR:tst03036]
 Eukaryotic type
  Centrosome formation proteins
   Spindle formation proteins
    117886078 (RAE1)
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_WDR5 Beta-prop_EML_2 WD40 Beta-prop_WDR3_1st WDR55 WD40_CDC20-Fz WD40_Prp19 WD40_WDHD1_1st Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR3_2nd Beta-prop_CAF1B_HIR1 EIF3I WD40_Gbeta Beta-prop_Aladin Beta-prop_TEP1_C Beta-prop_EML Beta-prop_TEP1_2nd Beta-prop_RIG_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_WDR90_POC16_2nd WD40_RFWD3 ANAPC4_WD40 Beta-prop_IFT140_1st eIF2A Beta-prop_ACSF4 Beta-prop_RSE1_2nd NBCH_WD40 Beta-prop_WDR41 WD40_MABP1-WDR62_1st Beta-prop_Nup120_160 WDR90_beta-prop_4th ExoI_SH3 Beta-prop_SPT8 B-prop_COPA_B_2nd PepSY
Other DBs
NCBI-GeneID: 117886078
NCBI-ProteinID: XP_034643605
LinkDB
Position
12:complement(12040972..12055048)
AA seq 368 aa
MSLFGSTSGFGAGGTSMFGNTATDNHNPMKDIEVTSPPDDSIGCLAFSPLALPGNFLIAG
SWANDVRCWEVQDNGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLNSNQA
IQIAQHEAPVKTVHWIKAPNYSCVMTGSWDKTLKFWDTRSPTPMMTLQLPERCYCADVVH
PMAVVATAERGLIVYQLENQPSEFRRIDSPLKHQHRCVAIFKDKVNKPTGFALGSIEGRV
AIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPAHGTLATVGSDGRFSFW
DKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQKKNYIFLRNAAE
ELKPRNKK
NT seq 1107 nt   +upstreamnt  +downstreamnt
atgagtttgtttggatcaacctcagggtttggagctggtggtaccagcatgtttggaaat
acagcaacagataatcacaaccccatgaaggatattgaagttacatctccacctgatgac
agcattggttgtttagctttcagtccactagcattgccgggtaacttccttattgcagga
tcctgggcaaatgatgttcggtgttgggaagttcaagataatggacaaactattccgaaa
gctcagcagatgcacacagggcctgtgctagatgtgtgttggagtgatgacgggagtaaa
gtatttactgcctcttgtgataaaactgccaaaatgtgggatctcaacagtaaccaggcc
atacaaattgcacagcatgaagcccctgttaagactgtccattggattaaagcaccaaac
tatagctgtgtgatgaccggaagttgggataaaactttgaagttctgggatacacgatca
ccaactcctatgatgacattacaactgcctgaaagatgctactgtgctgatgtggtgcat
cccatggcagttgtcgccactgcagaaagaggtttgatagtataccagttagagaatcag
ccttctgaatttagaagaatagactctccactgaaacaccagcatcgctgtgttgctatt
tttaaagacaaagtgaacaaacctactggatttgcccttggaagtattgaaggaagggta
gcaattcactatatcaacccaccaaatccagccaaagataacttcacttttaaatgtcat
cgctccaatggaacgaacacatcagcacctcaggatatctatgctgtaaatgggatagca
tttcatcctgcccatggcacccttgcgactgtaggatctgatggtagattcagcttttgg
gataaagatgcacgaacaaagctaaaaacatcagaacagcttgaccagccaatatctgcc
tgttgttttaaccacaatgggaatatttttgcatatgcttccagttacgactggtccaag
ggtcatgaattttataatccacaaaagaaaaactacatttttctgcgtaatgcagcagaa
gagttaaagcccaggaataaaaagtag

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