Trachemys scripta elegans (red-eared slider): 117886131
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Entry
117886131 CDS
T07347
Symbol
COL20A1
Name
(RefSeq) collagen alpha-1(XX) chain isoform X1
KO
K24357
collagen type XX alpha
Organism
tst
Trachemys scripta elegans (red-eared slider)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
fn3
VWA
Collagen
Ig_DSCAM-DSCAML_C
Pur_ac_phosph_N
VWA_2
DUF4998
CBM_4_9
Motif
Other DBs
NCBI-GeneID:
117886131
NCBI-ProteinID:
XP_034643659
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All DBs
Position
12:complement(5867499..5968454)
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AA seq
1472 aa
AA seq
DB search
MLSHRSFLFACITLASHVIGHVHGQGPNRLKLTVLSEDRLQMKWKETEGNTNGYKVQVKP
MAGDPEQEVMLKTKTPKATVGGLSPTKEYTLQIYVLNGSQEALFAKRKFVIQELKNVSQA
RNTRRNTATSPGNSITPLRNTATEHIPAAKTTSPAPSEASTQTAKDRPEKRRQKATVSKG
SSETLGRKPNTKFSVTETLTVLKTTLRSPTKSERGDLGQGKHTKETLKRGPQFRCDTSAT
TDIVLLVDGSWSIGRSNFKLIREFLSTLVSPFSIARDKIRIGLSQYSSDPRTEWNLNTYV
TRDEVLEAVRNLRYKGGNTFTGLALSHVLEQNLKPEAGARSDAVKLVILLTDGKSQDDAN
QSAQTLKNMGIEIFAIGVKNADEAELRQVASEPLELTVYNVLDFPLLSSLVSRLTRVLCT
RIKEKRKSENSGSPVKAVSANTGPHLSPTNLMISEVTSRSMHLSWTPPLRPPKKYRIVYY
PSSGGTPKEVVLDGSASSTQLVNLTSHTEYLVSVFPIYENAVGDGLRGITWTSLSPPLSL
RASEVSHNHLRLSWQPASGATQYLVLCSAAPNGAEDDTKEVKVEHPEVLLDGLSPSTEYS
VAVYAMYGEEASDPASIQETTLALSPPRHLSFSEVSHGSVKVSWAAASRAVRAHRVTYNS
SRGSNAGEVEVPSSASSIVLRPLSSLTQYFINVSSVYNEGESFPLTGNVTTLKVPPPSDL
KVAELSGNNVQLQWEAAAASDVLVYQIKWNASGEESSQELSVAGNLAVASLPGLKKNTEY
QISIWAYYKDGARSDTVSILHRTTSQSPPTNLVIDSETPNSLQVHWRPPGGHIQYYRVTY
APESDDSAQQTIMVSGKSSGVTLQSLLPNTEYKVMVSAVHDAGESDVVTTTGQTASALAK
LPSAQGSGPFQTEACPTISSTEGSLQGFDMMEAFGLVEKEYASIKGVAMEPYVFSGTRTY
TLFRDIQLTQRTSEVLLSGIPSAHTISILLRLLPETPKEPFAVWQLTDEDFQPLLGVILD
SSKKSLTYFNHDYKADLQEVTFDQQEVKKIFYGSFHKVHIAVSRFRIKLYLDCKKIAEKL
INAMGSVSTAGFIMLGKLTGTRGPRSGSAAFQLQSLQIVCSGSWAEEDRCCDLPALRNEE
TCPTLTPSCTCTSGIPGLPGPPGPPGSPGRRGPQGVQGEPGPKGEPGPPGQAGPEGPGGQ
QGSPGSQGITVQGPVGPPGIKGEKGDSGIPGMQGIPGAQGAPGRDGIQGAKGVRGLEGTA
GPPGPPGPRGFQGITGSRGSSGERGPPGDVGPTGLPGPKGERGEKGEPQSLATIYQLVSQ
ACEQMIQTHMLKFDSFIHEHTRKPVPVWDDTLKPGGPGPPGLPGIAGTRGERGEDGIPGQ
PGKDGYPGERGGPGPKGEKGMAGARDEGGQGPRGRAGPPGEEVIGDPGLKGSPGSTGTPG
FPGARGYPGAPGYPGGCDISGCYRASTRDFIP
NT seq
4419 nt
NT seq
+upstream
nt +downstream
nt
atgctgagtcacaggtccttcttgtttgcctgcataaccttggcgagtcatgtcatagga
cacgtgcatggtcaagggccaaaccggttgaaactaaccgtcctctcggaagacaggcta
cagatgaaatggaaagaaacagaagggaacaccaacgggtataaggttcaagtgaagccc
atggcaggtgacccggaacaggaagtcatgctgaaaaccaaaacgcctaaggcaacagtg
ggggggctgagccccacgaaggaatacaccctgcaaatctacgtgctcaatggctcccaa
gaagccctgtttgctaaaaggaaatttgtgattcaggagctgaaaaacgtctcgcaggct
agaaatacccgaaggaacacagcgacctccccaggaaacagcatcacccctttgagaaat
acagcaactgagcacattccagcggctaagacaacgtcaccggctccgagtgaagcctca
acacagacagcaaaagacagacctgaaaagagaagacagaaggcaacagtatccaagggc
tccagtgaaaccctcggaaggaaaccaaacaccaagttcagtgtgacagaaacactgaca
gtgctgaaaacaactctgcgcagccccacaaaatctgagcgaggagatctaggccaagga
aaacacacaaaggaaactttaaagagaggtcctcagtttcgatgtgacacatctgccaca
actgatatcgtcctgctggtggatgggtcttggagtattggacgcagcaacttcaagctt
atcagggagtttctgagcaccttggtttcaccattcagtattgcccgggataagataagg
ataggtttgtcccagtacagcagcgatccacggacagagtggaacctgaacacctatgtc
acaagggacgaggtgttagaggcggtgaggaacctgcgatataaaggcggcaacactttc
acaggcctcgctttgtcccatgtcctagaacaaaatctgaaacctgaagctggcgccagg
tcggacgcagtcaagctggtgatcctcttgactgatggaaaatcacaggatgatgccaac
caatctgcccagaccttgaaaaatatgggcatagagatatttgccattggggtgaaaaat
gcagatgaggcagagctgagacaggtggcgtcagagcccctggagctcaccgtgtataac
gtgctggatttccccctgctcagctcgctggtcagcaggctcacccgggtcttgtgcacc
aggatcaaagaaaagcgcaagagtgaaaactcaggcagtcctgtgaaagctgtctcagcc
aacactggtccccatctgagtcccaccaaccttatgatatcagaggtgacctccagaagc
atgcacctttcctggactcctccgctgagaccaccaaagaaatataggattgtatattac
ccatccagtggaggaacccccaaagaggtagttttagatggatctgcctcctccacccag
cttgtcaatttgacctcgcacaccgaatacctggtttcagtgtttcctatttatgaaaat
gccgttggagatgggctgaggggcatcacttggacatctttgtcaccacccctttctctg
agagcgtctgaagtgagccataaccatctaagactgagctggcagccggcaagtggagct
actcagtacctggtgctctgttcagcagcccccaatggagcggaggatgacaccaaagag
gtgaaagtggaacatcctgaggttctgctggatgggctgtctcccagcactgagtactcc
gtagcggtgtatgccatgtacggggaagaggcgagtgatccagccagcatccaggaaacc
accttggcactgagccctcctagacacctgagtttctctgaggtcagccatgggtctgtc
aaggtcagctgggctgcggcttcgcgtgctgtgagagctcaccgtgtgacctacaactca
agcagagggagcaatgccggggaggttgaagttcccagcagtgcatcatccattgtgctg
agacctctgtcctctctcacccagtacttcattaatgtcagctctgtttataatgaaggc
gaatcctttccgcttacaggcaatgttaccacattaaaggttccaccaccaagtgacctg
aaggtggctgagctctcaggaaacaatgtccagttgcaatgggaagcagccgctgcctct
gacgtcctggtttatcagattaaatggaatgcaagtggagaagagagctcccaggagctg
tctgttgctgggaacctggctgttgccagcttaccaggattgaaaaagaacacagaatac
cagatatcgatctgggcatattacaaggatggagctcgaagtgacactgtctctattctg
cacagaaccacttcccagagcccacccaccaacctcgttatagactcggagacccccaat
agcctgcaggtccactggagaccccctggcggccacatacagtactacagagtaacctac
gctcctgaatctgatgacagcgctcagcaaacaataatggtttctggtaaaagcagcgga
gtgaccctgcagtcactgcttcccaatacagaatacaaggtgatggtttctgctgtccat
gacgcaggagagagtgacgttgtaaccactactggccaaactgcttctgccttggctaaa
ctgccctcagcacaaggctccggtcccttccaaacagaggcttgccccactatcagttcc
actgaaggctctctgcaaggatttgacatgatggaagcttttggactggtggaaaaagaa
tatgcctccattaaaggagtggccatggaaccgtatgtgttcagcgggacccgtacttac
actctcttcagagatattcagctaacccagagaacaagtgaagtgcttctctctgggatt
ccgtctgcgcacaccatcagcatcctcctccggctcctcccagagactcccaaagagccc
tttgccgtgtggcagctaacagatgaggacttccagccactcctcggggttatacttgac
tccagtaagaaatccttgacctatttcaatcatgactacaaggctgatttacaggaagtc
acctttgaccaacaggaagtgaagaagatattttatgggagctttcataaggtgcacata
gctgtgagccgtttcaggatcaaactctacttggactgtaagaaaatagcagagaaactg
atcaatgctatgggaagcgtctccacagctggcttcatcatgctaggaaaactgacagga
accagaggacccaggagtgggtcagcagcgttccagctgcagtctttacagattgtttgc
agcggctcatgggcagaggaagatagatgttgtgatctcccggcactgagaaatgaagag
acctgccctaccttgactccttcctgcacctgcacttcaggtatcccaggcctgccaggt
cctccagggccccctggcagtcctgggagaagaggaccgcaaggggtacaaggggaacca
gggccgaagggtgagccaggtcctcctggacaagccggaccggagggtcctggtggacaa
caagggtcaccaggctcccaaggaatcaccgtgcagggtccagtggggccaccaggaatt
aaaggggagaaaggagacagtggaatcccaggcatgcagggtattcctggtgcccaggga
gctccaggcagagatggcattcagggtgcaaagggggtgagaggactggaaggcacagca
gggcctccggggccaccaggacccaggggtttccaaggaataacaggttcccgaggcagt
agtggagagcgaggacctccaggtgatgttggacccaccggtctgcctggtccaaagggg
gaaagaggagagaaaggtgaaccacaatccctggccacaatttaccagctggttagtcag
gcttgtgagcagatgattcagactcatatgttgaaattcgactcattcatccatgaacat
acaaggaagccagttcctgtgtgggatgacacattgaagccaggaggacctggaccacca
ggtcttccaggtatcgctggtactagaggagaaagaggagaagacggtatcccaggacag
ccaggcaaagatgggtatcctggggaaagaggaggaccaggacccaagggtgagaaaggg
atggctggagccagggacgaaggaggccagggaccaagaggacgagcaggccctccagga
gaagaagtcataggggacccgggtctgaagggttcccccgggagcaccggtactccaggt
tttcctggtgccagaggctatcctggggcacctggctacccaggtggttgtgatatctct
ggctgctaccgggcaagcacaagagatttcatcccatga
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integrated database retrieval system
