Trachemys scripta elegans (red-eared slider): 117886407
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Entry
117886407 CDS
T07347
Name
(RefSeq) LOW QUALITY PROTEIN: transcription initiation factor TFIID subunit 4-like
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
117886407
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tst03021
]
117886407
03036 Chromosome and associated proteins [BR:
tst03036
]
117886407
Transcription machinery [BR:
tst03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
117886407
Coactivators
SAGA/TFTC/STAGA complex
117886407
Chromosome and associated proteins [BR:
tst03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
117886407
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
TAF
DUF1955
Presenilin
Motif
Other DBs
NCBI-GeneID:
117886407
NCBI-ProteinID:
XP_034644052
LinkDB
All DBs
Position
13:19971570..20180692
Genome browser
AA seq
1105 aa
AA seq
DB search
MAAGASDPLEEMLLFSEEVDEKAVSDLVGSLESQLAGGRGSAEGPPPNSSPPSHQQQEHQ
GSLVEGGSPVQQQQQGHPAPPHFPGAGETARCPSAVGSPLPAQGAPPALSPSAAAAGRGA
SVNSSSMQQSHGAAPCSSNPSAPAAPVPLQSAAPPPPVGAPAQPVSNHVDANAAAPAVGS
GAREVESPRHGCSPPAAAAGAVNSVLLLNSEAATAGGSPEAAGAVTPVAAAAASRELAKA
VMLSSTAAAPPPALSLLQRPALHSVPPAAHSGNGTSSSAPVVVTQSLKAGCAPAAITQVV
NHQNPAVSHSKPDSSTAQTKLLTHNPAVNALSNSTSSVPTMNLVTHPAQSSVANCAPVVS
SPITLTAISKPTVNIIGPPGSAVGVAKSATAVPVVSAVPQSLSPRPAVGTAQRIVAPQLI
VRPPQQTTIQLPPGFTIPPGMVLVRTEAGQLVMVPQQVLAQAQVQAQVQTQGQGPASISP
RLSVPTSGPVFRLTTTQQPTSVAASAVHLGLPRQAKVVQSTATPVSATSTATLHGGSTLS
HTTVSIATTSAQSLIKATVATGTPATQQPTVIFGGQSQTPAQPQGQPRLPLPPHTTAQVP
AQPQVIPSSPVPGTTVVSQEMQENVKKCKNFLATLIKLASHNSPSPETSHNVKALVQDLL
DAKIDPEEFTGCLQSELKSSPQPYLVPFLKKSLPALRQSLLNSQHSVLQGQPSQQPLQQT
KLSQVIPQPASGSISSNVTTQTVGIRQPNSICTFVSNTVQPPQVKLVQSNPSSQLIIQST
SAQTVKRNPACQTTQIRMPVVITQTIRPQGTVGKAPTIQASQSPGGFGVQVSANQKNKLN
DPGGGSFRDDDDINDVASMAGVNLNEESARIMATNSDLVGTQIQSCKDEPFLAAIPLHKR
ILEMAKKLGITDVPTEVVTFISHATQNRLRTVIEKVTMVTQHRMESHKDDEWYEQATDVR
SQLKFFEQLEHLEKQRKDEQEREILLKAAKSRSRQEDPEQARLKQKAKEMQQQELAQMRQ
RDANLTALAAIGPRKKRKLDSAGLLTIGGEVLGMTSGSQAGFGAPSSRQYARQKITRVNL
RDFIFYMEQERETSHSLLLYRALLK
NT seq
3318 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgggcgcctcggaccccctggaagagatgctgcttttctccgaagaggtggat
gagaaggcggtcagcgacctggtgggctccctggaatcacagctggccggcgggaggggc
tctgccgagggccccccccctaacagcagccccccatcccaccagcagcaagagcaccag
gggagcctggtggagggcggcagcccagtccagcaacagcagcaagggcatcctgctcct
cctcatttccccggggcaggggagaccgccaggtgtccaagtgccgtgggcagcccactc
ccagcccagggggcacccccagccttgtccccctcagcggcggcggccgggaggggagcg
agtgtaaacagtagtagcatgcagcaatcacatggagcagctccttgcagcagcaacccg
agtgcacctgctgcccctgtcccactgcaatccgctgccccacctccgcctgtcggcgcc
ccagcccagcctgtcagcaaccacgtggatgccaatgccgctgctcccgctgttggcagt
ggtgcccgggaagtggagagtcccagacatgggtgtagtcctcctgcagcagccgctggt
gcggtgaacagtgtgttgctgcttaactccgaggccgccactgctggagggtcgcctgag
gctgccggtgctgtcactccagtagcagcagccgcagcaagtcgggaacttgcaaaggcg
gtaatgctgagtagtacagctgctgctccgcctcctgctctctctcttctccagagacca
gcactgcattctgttcctcccgcggcacacagtgggaatggcacttcctccagcgctcct
gtggttgtcactcagagtctaaaggctggttgtgccccagcagcaataacacaggttgtc
aaccatcagaatccggctgtcagccacagcaaaccagactcctccacagcacagactaaa
ctcctcacacacaatcctgcagtaaatgcactcagtaactctaccagttctgttcctaca
atgaaccttgtcacccatccagcccaaagttcagtagccaactgtgcccctgtagtgtcc
agcccgatcaccctcactgctatatctaaacccacagttaatattatagggccacctggc
tctgcagttggtgtagccaaatcagccacggctgtacctgtcgtctctgcagtcccccag
tcgctgtcacccaggcctgcagtgggcactgctcagagaatagttgcaccacaattgatt
gttagaccgcctcagcagactacaatccagttgcctccaggttttactataccacctggt
atggtcttggtgcgcacagaagctggacagcttgtaatggtacctcagcaggttttagcc
caagctcaagtgcaagctcaagtacaaacacaggggcaaggtcctgccagcatctcaccc
aggctttcagtgcccacaagtggtccagtttttcgtttaacaacaacccagcaaccaact
tctgtagccgcatctgctgtccacctgggacttccaaggcaagccaaagttgtacagtca
actgctacaccagttagtgctacatctactgcaaccttacatggaggctccactctgtca
cacactacagtatcaatagctaccacaagtgctcagagcttaattaaagcaacagtagca
actggaaccccagcaactcaacaacctacagtaatttttggaggacaaagtcaaacccca
gcacaaccccaaggtcagcctcgattgccacttccacctcatacgacagcacaagtacca
gcacagccccaggtcatacctagctctcctgtaccagggactaccgttgtatcacaggaa
atgcaagagaatgtgaagaaatgcaaaaactttttagctaccctgataaaacttgcttcc
cataattcaccttctccagaaacatcccataatgtgaaagctctggttcaggatttgctg
gatgcaaagattgatccagaagaatttacaggctgccttcagtcagagctgaaatcatct
cctcagccatatctagtacctttcctgaagaaaagtctgccggcattgagacaatcttta
ttgaatagccaacattcggttttgcaaggacagccatctcagcagccgcttcaacaaacc
aagctgtcacaagttatacctcaacctgcctctggaagtatttcctctaatgtcacaact
cagacagtaggaataaggcaaccaaacagcatttgcacatttgtatcaaatacagttcag
cctcctcaggttaaactagtacagtcaaatccgagttctcaactgattatccagtcaaca
tctgctcaaactgtgaaacgaaaccctgcttgccagactacccagattaggatgccagtg
gtaataactcagaccattagaccacaaggcacagtagggaaggcaccaacaatacaagcc
agccaaagtcctgggggctttggtgttcaggtctctgcaaatcagaaaaacaagttgaat
gaccctggaggtggatctttcagagatgacgatgacatcaatgatgttgcctctatggct
ggagttaaccttaatgaagagagtgcccgaattatggcaaccaactccgacttggttgga
acccagatacagtcttgtaaagatgaaccctttcttgctgctatccctttacataaacga
atactagaaatggctaaaaaattaggaattacagatgtgcccactgaggtggttaccttt
atttcccatgcaacacaaaaccgattgagaacagtgatagaaaaagtaacaatggtaaca
cagcaccgaatggaatcgcacaaagacgatgaatggtatgaacaggctacagatgttcga
tcacaactgaagttttttgaacagttggagcatttagaaaagcaaaggaaagatgaacaa
gagagggaaattttgttaaaggcagccaagagtcgctcaaggcaagaagacccagagcaa
gctaggctgaaacaaaaagcaaaggagatgcagcaacaagaactagcacagatgaggcag
agggatgccaacctaactgcattggcagctattggtccacggaagaaacggaagcttgat
tcagctggcttacttaccataggaggagaggttttgggcatgaccagtggaagtcaggct
ggttttggggctccttcatctagacagtatgcacgacagaaaataactcgagtaaacctc
agggacttcatcttttacatggagcaggaaagagaaactagccattctctcctgctctac
agagctttgcttaaataa
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integrated database retrieval system
