Trachemys scripta elegans (red-eared slider): 117886534
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Entry
117886534 CDS
T07347
Symbol
EDC4
Name
(RefSeq) enhancer of mRNA-decapping protein 4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117886534 (EDC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tst03019
]
117886534 (EDC4)
Messenger RNA biogenesis [BR:
tst03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
117886534 (EDC4)
mRNA degradation factors
5'-3' decay
Decapping complex
117886534 (EDC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
Beta-prop_EDC4L
Beta-prop_HPS5
Beta-prop_TEP1_2nd
WD40_CDC20-Fz
WDR55
NBCH_WD40
Uteroglobin
EIF3I
Motif
Other DBs
NCBI-GeneID:
117886534
NCBI-ProteinID:
XP_034644331
LinkDB
All DBs
Position
13:complement(40599619..40646584)
Genome browser
AA seq
1401 aa
AA seq
DB search
MASASIDIEDATQHLRDILKLDRPAGSVNENQRPPNSFNGDLNGLLVPDPVAAGDGAPLA
KPMLRTVPLGTLQEKQVICLSGDDSSTCVVISAKDVEIVASSDSSITSKARGSNKVKIQP
VARYDWEQKYYYGNLIAVSNSYLAYAIRGASNGSAMVRVLSISTAERTLLKGFTGGVADL
AFAHLNSNQLACLDEAGNLFVWGLAMDNGKIQEEILVNIKRPEGTPLNSFRRIIWCPFIP
DENEESGEEGSQTLALLHEDRAEVWDLDIIRANNSSWPVEVTNIKEGFIVVKGHSTCLSE
GALSPDGTVLATASHDGYVKFWQIYIEGQDEPRCLHEWKPHDGRPLSCLLFCDNHKKQDP
EVPFWRFLITGADQNRELKMWCTVSWTCLQTVRFSPDIFSSKSVPPSLKACLDLSAEFLI
LSDVQRKVLYVMELLQNQEEGRAYFSSISEFLLTHPVLSFGIQVVSRCRLRHTEVLPAEE
ESDSLSTEGAQGAGAVESAAGVLIKLFCVHTKALQDVQIRFQPFHSPDMAAPIPPHGSHE
DFAFPDHLADLGAEGLGSEKGSVHGSQPDLRRIADLPVPADFLALSNDAKPKLMTPDAFM
TPSTSLQQIAMSPGSSVSSLTAVTAMSSASVTDPAVPRPSEDLTLSPKMQLDTSLTLSSS
SSSLQTSPRNHSVLIPGLPDKLTPKAPVPVTPANPPLTLELQEVEPLVVAQASPTRERSP
DVISSASTAMSQDIPEIASETLQRSFAAAPAGLPAEVLEPNHHADSMASAASALHLLSPR
NRHSSEHSQHSLDMAPVEVDRLTTPSLLETALTQENASSNSVVSQPWPAAPDITRETRNS
IADSPRDDIAEKHKSSSYHRHSYHLLQHDSQDASAEQSDHDDEVASLASTSGGFGAKASA
QRLPVKDWKAKVSPRASPKLKRKGKKDDGDVTQSPRSGDRQVTAECQDELMSLLRSQQRE
LTELRQNQMELMQRLTDHLDAVQSSLMGHMERVIDSQQEQEQRRLDRALTEGQQRNGQLQ
EHLSQQLSQSLSTAACNRLERTIREEMKKTVPQCISKSLDPVTGQLSNTIAAKLTAVEGT
LKENVTKLVKSKNLTDAIARAAADALQGPIQSAYREAFQSVVLPAFEKSCQSMFQQINDT
FKQGTQEYIQQLETHMKNKKAREQEARDSLLGQLRQLISTFQSSTEQLASTITTSVHTEV
QHQLHVIVGNMQDSILTQVQRVIKGEVSLAMKEQQAAVTSSIVQAMRSAAGTPIPSAHLD
FQSQQTHVLQLLQQGRLNQAFQQALTAADLNLVLYVCETVDPQQVFGQHPCPLSQPVLLS
LIQQLSSDLGTRTELKLNYLEEAVMHLDHSDPITRDHMGSVMNQVRQKLFQFLQAEPHNT
LSKPARRLMIMLQGLVTPSMT
NT seq
4206 nt
NT seq
+upstream
nt +downstream
nt
atggcctctgccagcatcgacatcgaggacgcgacccagcacctgagggacatcctcaag
ctggaccggccggcaggttcagtgaacgaaaaccagaggccacccaactcgttcaacggg
gacttgaatgggctgctggtgccagaccccgttgcagctggagatggagctcccttggct
aagccaatgctccgaactgttcctctgggaaccctgcaggagaagcaagtcatctgcctt
tctggagatgacagctccacctgcgtggtgatatcagcaaaagacgtggagattgtggcc
agcagtgactctagcatcaccagtaaagccagagggagcaacaaggtaaaaatacagcca
gtagccaggtatgactgggagcagaaatactactatggcaacctgatagctgtatcaaac
tcctacctggcatatgccattagaggtgccagcaatggctcggctatggtgcgggtgctg
agcatcagcactgccgagcggaccttgctgaagggcttcacgggcggcgtggcagacctg
gctttcgcccatctcaactccaaccagctggcctgcctggacgaggctggcaacctcttt
gtctggggcctggccatggacaatgggaaaatccaagaggaaatcttggtgaacataaaa
cgacctgagggcaccccgctgaacagcttccggagaatcatatggtgccccttcatccca
gacgagaatgaggagagcggtgaagagggcagccaaacattggcattgctgcacgaggac
agggcagaggtttgggatctggatattatccgagccaacaacagttcctggccggtggag
gtgactaacatcaaagagggcttcattgtggtgaaaggccacagcacgtgcctgagcgag
ggagcgctctctccagatgggaccgtcttggccacagcaagccacgatggctatgtcaaa
ttctggcagatctacatagaggggcaagatgagcccaggtgcctgcatgaatggaagccc
catgacggcaggccgctctcctgcctgctcttctgtgataatcacaaaaaacaagaccca
gaggttcctttctggaggtttctcatcactggagcagatcagaaccgagagctgaagatg
tggtgcaccgtttcttggacctgtctgcaaactgtccgcttttcccctgacatcttcagt
tccaagagtgttccccccagtctgaaagcctgcctggacctctctgccgaattcctgatc
ctgagcgacgtgcagagaaaagtcctgtatgtgatggagcttttgcagaaccaggaggag
ggcagagcttacttcagctccatctcggagttcctcctcacccacccggtcctgagcttt
ggcatccaggtggtgagccgctgccgactgcggcacacggaggtcctcccagctgaagag
gaaagcgacagcctgagcacagaaggggctcagggggctggggctgtcgaatcggcggcg
ggtgtgctgatcaagctcttctgcgtccacaccaaggccctgcaggatgtgcagatccga
ttccaaccttttcatagtccagatatggctgcaccgatccctccccacggctctcatgaa
gatttcgcgtttccagaccatctggctgacctgggcgcagaagggctgggatcggagaag
gggtccgtccatggctcccaaccggacttacggcgcattgcagacctgcctgtgccagcg
gattttcttgccctctccaacgatgccaaacccaagctgatgaccccagatgcattcatg
accccaagcacatctcttcagcagattgccatgtcgccgggaagcagcgtcagttccctg
actgcagtcacagccatgagcagcgcttccgtcactgaccccgctgtgcccaggccatct
gaggacctgactttgagcccaaagatgcagttggacaccagcctgacgctaagcagcagt
agcagcagtctccagacgagtcctaggaaccattcagtccttatccctggactccctgac
aagctgaccccaaaggcccctgtcccggtcactccagcaaacccccctctgactctggag
ctgcaggaagtggagccccttgtggtagcccaggcctcacccacccgtgagcgctccccg
gacgtcatttcctcggcctccacggccatgtcccaggacatcccagagatcgcctctgag
acgctgcagcgcagctttgccgcagccccggccgggctccctgcagaggtgctggagccc
aaccaccacgcggacagcatggcctcggccgcctcggccttgcacttgctgtccccgagg
aaccggcacagctccgagcacagccagcactccctcgacatggcccctgtggaggtggac
aggctgaccacaccctcgttactggagactgctttaactcaggaaaatgcatcttccaac
agcgtcgtgagccagccgtggccagcggcccccgacatcaccagggaaaccaggaacagc
atagcagacagcccaagggatgacattgcagagaagcacaagagctcttcctatcacagg
cacagctaccacctgctgcagcacgacagccaggatgccagtgcagagcaaagtgaccat
gatgatgaagttgcaagtttggcttctacatcaggcgggtttggtgccaaagcatctgca
cagaggctgcctgtgaaggactggaaagccaaggtgtcccctcgggcttcccccaagctc
aaacggaagggcaagaaagatgacggggatgtgacccagtccccgaggtcaggtgatcgc
caggtgaccgccgagtgccaggatgagctgatgtctctgctgcggagccaacagagggag
ctcacggagctgagacagaaccagatggaactaatgcagagactcactgaccacctggat
gctgtgcagagctccctcatgggtcacatggaacgagtgattgactctcagcaagaacaa
gagcagcggaggctggaccgagctctgacagaggggcagcagcggaacgggcagctccag
gagcacctgtcccagcagctctcgcagtccctctccactgctgcctgcaatcgcctggag
aggaccatccgcgaggagatgaagaagacggtgccccagtgcatttccaagagcctggac
cctgtcactggccagctgagcaatacgattgccgccaagctcacggctgttgaggggaca
ttgaaggaaaacgtcaccaagctagtgaaatcaaagaacctgacagatgccattgcgagg
gcagcggcggatgcgctgcaggggcccatccagtcggcgtacagggaggcgttccagagc
gttgtgttgccggcgtttgagaagagctgccagtccatgttccagcaaatcaacgacacc
ttcaagcaggggacgcaggaatatatccagcagctcgagactcacatgaagaacaagaag
gcgcgagagcaggaagcccgagactccttgctgggccagctccggcagctgatcagcacc
ttccagagcagcacagagcagctggcctccaccatcaccaccagcgtgcacaccgaagtg
cagcatcagctgcacgtcattgtgggcaacatgcaggactctattctgacccaggtgcag
agggtcatcaagggagaggtgagcctggccatgaaggagcagcaagcggccgtcacctcg
agcatcgtgcaggccatgcgctccgccgcaggcacgcccatcccctctgctcacctggac
ttccagtctcagcagactcacgtcctgcagctgctgcagcagggccgcctcaaccaggct
ttccagcaggctctcacggcagctgatctgaacctggtcctatacgtctgtgagacggtg
gatcctcagcaggtgtttggacagcacccatgtccgctctcccagcccgtcctcctgtct
ctcattcagcagctctcctcggatctgggcacccgcaccgaactgaaactgaactacctg
gaggaggccgtgatgcacctggaccacagcgaccccatcacccgagaccacatggggtcg
gtcatgaaccaggtgcggcagaagctcttccagttcctgcaggcagagccccacaacacc
ctgagcaagccggcccgccgcctcatgatcatgcttcagggcctggtcacccccagcatg
acctaa
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integrated database retrieval system
