Trachemys scripta elegans (red-eared slider): 117886542
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Entry
117886542 CDS
T07347
Symbol
RFWD3
Name
(RefSeq) E3 ubiquitin-protein ligase RFWD3 isoform X1
KO
K15691
E3 ubiquitin-protein ligase RFWD3 [EC:
2.3.2.27
]
Organism
tst
Trachemys scripta elegans (red-eared slider)
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
tst04121
]
117886542 (RFWD3)
Enzymes [BR:
tst01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
117886542 (RFWD3)
Ubiquitin system [BR:
tst04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
117886542 (RFWD3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_RFWD3
zf-RING_2
Beta-prop_WDR5
WD40_CDC20-Fz
zf-C3HC4
zf-C3HC4_2
Beta-prop_THOC3
Beta-prop_WDR3_1st
EIF3I
zf-RING_UBOX
Beta-prop_EML
WDR55
Beta-prop_EML_2
zf-rbx1
Myo5a
WD40_2
Rtf2
Beta-prop_WDR3_2nd
Beta-prop_RIG_2nd
zf-RING_11
zf-ANAPC11
zf-C3HC4_4
Beta-prop_WDR36-Utp21_1st
WD40_Prp19
zf-RING_Vps41
DUF7837
Beta-prop_WDR36-Utp21_2nd
TX13_rpt
Motif
Other DBs
NCBI-GeneID:
117886542
NCBI-ProteinID:
XP_034644345
LinkDB
All DBs
Position
13:complement(37962505..38026119)
Genome browser
AA seq
748 aa
AA seq
DB search
MAQEEMEVDLQPAVTYSVEHHEAFPSETSGHALLSLPSNSPVPSEEAEGIVVPPADEEVI
VVSGADEAVTVAESDPQLHAAPSLDGLQRLHGVLELFRLQAAQQITRQPPTRRTRRRQRG
GGSQRTISTRPRAPLDSYFMVNRTQGSTTAAFPPLETLHLPVGNSGHSSDETLELSDSDS
SSSTEEEDVAVPQEEAPIAASLGVSDQVQPEPPQPVLSSAEHEGRDAEEAEVQHKQRTPL
KKPDVTVPTVPLDEEEGDTCAICFEQWTNAGEHRLSALRCGHLFGYTCIVRWLKGQAGKC
PQCNKKAKRSDVVVLYARTLKALDTSEQERMKSSLEKEQMLRRQAELESAQSRLQLQVLT
DECSKLRKQIQELKALMAQHTTSASQQPGSSRSCFPGGLSSSQSQHKYHFEKAFLVSQSG
SCRVMAYCDSLSCLVVSQPSPQATLIPGCGVKMMSAANLKSSQYIPIHSKQIRGLAFSNR
TDGLLLSAALDHTLKLTSLTTNTVVQSYNAGRPVWSCCWCLDDTNYIYAGLVNGSILVYD
LRDTSSHVQELAPQKSRCPVVSLSYLPRMASTTLPYGGVVAGTLEGGCFWEQKASNSYRP
HHLPLEPGGCIDIQTEISTRHCLATYRPNKSNNCLHCVVMELSCSQLMDASVDMVCSCHP
VQTFSAGPTCKLLTKNAIFQSPEEDGSILVCAGDEASNSAMVWDAGSGSLLQKLQTDLPV
LDICPFTVNRNNFLATLTEKMVKFYKWE
NT seq
2247 nt
NT seq
+upstream
nt +downstream
nt
atggcacaggaagaaatggaagtggatcttcagccagcagttacttattctgtggagcac
catgaggcatttccctcagagacctctggtcatgctctactgtcacttccatccaactct
ccagtgcccagtgaagaggcagaaggcattgtggttcctcctgctgacgaagaagtcatt
gtggtctccggtgctgatgaagcagtgacagttgctgagtctgacccccagttgcatgct
gcccctagcctggatggactgcaaaggctgcatggggtattggagctgtttcgactacag
gctgcacaacagatcacacgacagccaccaacaaggagaactcgccggcgacaaagaggt
ggtggatcccagaggacaatcagtaccaggcccagggcaccactagatagttatttcatg
gtcaacaggacccaagggtcaacaacagcagcatttccaccactggagactttgcatctt
ccagttggcaacagcggtcacagctcagatgagaccttggagctgagcgactctgacagc
agcagctccactgaggaggaggatgtggcagtaccccaagaggaggcacccatagctgcc
agtttgggagtttctgatcaggtccaaccagaaccccctcagcctgtgctttcctctgca
gagcatgaaggtcgtgatgctgaagaagctgaagtccagcacaaacagagaactccacta
aagaaacctgatgtgacagttcccactgtaccgttggatgaggaagaaggagacacctgt
gccatctgctttgagcaatggactaatgctggggagcaccggctctcagcgttgcggtgt
ggacacctgtttggatacacttgcattgtaaggtggctcaagggacaggcagggaaatgc
cctcagtgcaataagaaggcaaagcgttctgacgtagtggtcctgtatgcccgtactttg
aaagcactggacaccagtgaacaggagcgcatgaaaagctctttagaaaaggagcagatg
ttgcggagacaggcggaattggaatctgcacagagccgccttcagctgcaggtcttgaca
gatgaatgcagtaaacttcgcaagcaaattcaggagctgaaagcactgatggcccagcac
accactagcgcctctcagcaacctggcagctcccgttcctgtttcccaggcggtctctcc
tccagtcagagccagcacaaataccactttgagaaggccttcctggtttctcagtcaggg
agctgccgggttatggcttactgtgactcactgagctgtcttgtggtgtcacagccctct
ccgcaggctacacttattcctggttgtggcgttaagatgatgagtgctgccaacctgaag
agcagtcagtacattcccatccacagtaagcagatccggggactggccttcagtaatcga
acagatggcttgctgctgtctgctgctttggaccacacactcaaacttaccagtttgaca
acaaatactgtggtccagtcatacaatgccggccgccctgtgtggagctgctgctggtgc
cttgatgataccaattatatctatgctgggcttgtcaatggctctatcctggtgtatgat
ctaagggacacaagctctcatgtccaggaactagctcctcagaagtccaggtgtcctgtg
gtgtccctgtcctacctgccccgaatggcctccaccacactgccatacggtggagtagta
gctgggaccttagaaggaggctgcttttgggaacagaaggccagcaactcctaccggcct
caccatctacctctagagcccggaggctgcattgatattcagactgaaatcagcactcgg
cactgccttgcaacttacaggcctaataagagcaacaattgcctgcattgtgtggtgatg
gaactgtcctgtagccaactgatggatgcatctgtcgacatggtctgctcctgtcaccca
gttcagacattcagtgctgggcccacctgcaaactgctgaccaaaaatgccatctttcag
agtccagaggaggatggcagcatcttggtgtgcgctggcgatgaggcctcaaactctgct
atggtatgggatgctggaagtggctccttactgcagaagctacaaactgacctacctgtg
ctggacatctgccccttcacggtgaaccgcaataacttcctggccactctcactgagaag
atggtgaagttctacaagtgggagtga
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integrated database retrieval system
