Trachemys scripta elegans (red-eared slider): 117886564
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Entry
117886564 CDS
T07347
Symbol
CTCF
Name
(RefSeq) transcriptional repressor CTCF isoform X1
KO
K23195
transcriptional repressor CTCF
Organism
tst
Trachemys scripta elegans (red-eared slider)
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tst03000
]
117886564 (CTCF)
03036 Chromosome and associated proteins [BR:
tst03036
]
117886564 (CTCF)
Transcription factors [BR:
tst03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
117886564 (CTCF)
Chromosome and associated proteins [BR:
tst03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
117886564 (CTCF)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-H2C2_2
zf-C2H2
zf-C2H2_4
zf-C2H2_16
zf-H2C2_5
zf-C2H2_jaz
zf-C2H2_REST
zf-C2H2_ZN142
Zf-C2H2_ZNF451_C
zf-C2H2_7th_ZNF462
zf-met
zf-C2HE
zf-C2H2_6
Zf-C2H2_ZNF451
zf-C2H2_15
A24_N_bact
zf-WIZ
Motif
Other DBs
NCBI-GeneID:
117886564
NCBI-ProteinID:
XP_034644390
LinkDB
All DBs
Position
13:complement(39149944..39196631)
Genome browser
AA seq
698 aa
AA seq
DB search
MESETIEAIGEESETFIKGKERKTYQRRREGGQEEDACHIPPNQADGGEVVQDVNSGVQM
VMMEQLDPALLQMKTEVMEGTVAQEAEATVDDTQIITLQVVNMEEQPINLGELQLVQVPV
PVTVPVATTSVEELQGAYENEVSKGGLQEGEPMICHTLPLPEGFQVVKVGANGEVETLEQ
GELQPQEDPNWQKDPDYQPPAKKTKKTKKSKLRYTEEGKDVDVSVYDFEEEQQEGLLSEV
NAEKVVGNMKPPKPTKIKKKGVKKTFQCELCSYTCPRRSNLDRHMKSHTDERPHKCHLCG
RAFRTVTLLRNHLNTHTGTRPHKCPDCDMAFVTSGELVRHRRYKHTHEKPFKCSMCDYAS
VEVSKLKRHIRSHTGERPFQCSLCSYASRDTYKLKRHMRTHSGEKPYECYICHARFTQSG
TMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYIEQGKKCRYCDAVFHERY
ALIQHQKSHKNEKRFKCDQCDYACRQERHMIMHKRTHTGEKPYACSHCDKTFRQKQLLDM
HFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCSGPDGVEGENGGEPKKGKRGRKR
KMRSKKEDSSDSEENAEPDLDDNEDEEETAVEIEAEPEVEPVAPAPPPAKKRRGRPPGKA
NQPKQPQRKLLPDLQSSIQCDQLHIWISVHFPKAFHST
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
atggaaagcgagacaatcgaagctattggggaggagtcggaaactttcattaaggggaaa
gaaagaaagacctatcaaagacgccgtgaaggtgggcaggaggaggatgcttgccatata
ccaccgaaccaagcagatgggggtgaagtagtgcaggatgtcaacagtggcgtgcaaatg
gtaatgatggaacagctggatccagcgctgcttcaaatgaagactgaagtaatggaaggc
acagtggctcaggaagcagaggctacagtagatgacacacagataataacacttcaggtt
gttaatatggaagaacagcctataaaccttggtgagcttcagcttgtccaagtacctgtt
ccagtgactgtacctgttgccactacgtctgtggaagaacttcagggagcctatgaaaat
gaagtttccaaaggaggcctgcaggagggagagcctatgatctgtcacacgctcccttta
ccagaagggttccaggtagtgaaagtaggtgcaaatggtgaggtggagacactggaacaa
ggtgaacttcagccacaggaagatcccaattggcagaaagatccagactatcagccacca
gccaaaaaaacaaagaaaaccaaaaagagcaagctccggtacactgaggaaggcaaagat
gtggatgtttctgtgtatgactttgaagaggagcagcaggagggtttgctgtctgaggtt
aatgcagaaaaggtggtgggcaacatgaagccccctaaaccaacaaaaatcaaaaagaaa
ggtgtaaagaagacattccagtgcgagctgtgcagttatacttgtccacgtcgttctaac
ttggaccgccacatgaaaagccacactgatgaaagaccacacaagtgccatctctgtggt
agagctttccggacagtcacgctgctgaggaaccacctcaatactcacacaggtactcgc
cctcacaagtgcccagactgcgatatggcctttgtgaccagtggagagttggttcggcat
cgccgttacaaacatactcatgagaaaccattcaaatgttcgatgtgcgactatgctagt
gtagaggtcagcaagttgaaacgccacattcgctctcatactggagagcgcccattccag
tgcagcttgtgcagttatgccagcagagatacttacaaactgaagaggcacatgagaact
cactctggagagaagccttatgaatgttacatctgtcatgctcgctttacccagagtggc
accatgaaaatgcacattttacagaagcacacagagaatgtggccaaatttcactgcccc
cactgcgacactgtcatagcaagaaagagtgatttaggtgttcatttacgaaagcagcat
tcctacattgagcagggcaagaagtgccgttactgtgatgctgtgttccacgagcgatac
gctctcatccagcatcagaaatctcacaagaatgagaagcgcttcaagtgtgaccagtgt
gattatgcatgcagacaggagcggcacatgatcatgcacaaacgtacccatactggagaa
aagccttatgcctgtagccattgtgataaaaccttccgtcagaaacagctcctcgatatg
cacttcaaacgttaccatgaccccaactttgtccctgctgcctttgtctgttcaaagtgt
gggaaaacattcactcgcaggaacaccatggctagacatgcagataattgttctggccca
gatggtgtagaaggagagaatggaggggagcctaagaagggaaaacgtgggagaaagaga
aagatgcgttctaaaaaagaagattcctctgatagtgaggaaaatgctgaaccagatctg
gatgacaatgaagatgaggaggagacagcagtagaaattgaggctgaaccggaagtggag
ccagtggctcccgcaccacctcctgctaagaaacgaagaggaaggccgccaggcaaagcc
aaccaaccaaaacaaccccagcgtaagttactgcctgaccttcagagtagcatccagtgt
gatcagctccacatatggatctctgtgcactttcctaaggcttttcattccacttga
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integrated database retrieval system
