Trachemys scripta elegans (red-eared slider): 117886580
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Entry
117886580 CDS
T07347
Symbol
KATNB1
Name
(RefSeq) katanin p80 WD40 repeat-containing subunit B1
KO
K18643
katanin p80 WD40 repeat-containing subunit B1
Organism
tst
Trachemys scripta elegans (red-eared slider)
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
tst04812
]
117886580 (KATNB1)
Cytoskeleton proteins [BR:
tst04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Microtubule severing proteins
117886580 (KATNB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
Katanin_con80
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_WDR90_POC16_2nd
WDR55
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
Beta-prop_DCAF4
Beta-prop_SCAP
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
NBCH_WD40
Beta-prop_SPT8
Beta-prop_IFT122_1st
WD40_RFWD3
Beta-prop_Vps41
Beta-prop_IFT140_1st
Beta-prop_RIG_2nd
Beta-prop_EIPR1
WDR90_beta-prop_4th
Beta-prop_HPS5
eIF2A
Beta-prop_RIG_1st
PROPPIN
RMC1_N
Beta-prop_WDR19_1st
WDR54
VPS8_N
Beta-prop_LRRK2
Beta-prop_IP5PC_F
Beta-prop_VPS8
WD_LRWD1
Beta-prop_WDR35_TULP_N
Ge1_WD40
Motif
Other DBs
NCBI-GeneID:
117886580
NCBI-ProteinID:
XP_034644424
LinkDB
All DBs
Position
13:41810869..41839088
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AA seq
657 aa
AA seq
DB search
MAASVATKTSWKLQEITAHSSNVSSLVLGKSSGRLLATGGEDCRVNIWSVNKPNCIISLT
GHTTPVESVRINTNEELIVAGSQSGSIRVWDLEAAKILRTLMGHKANICSLDFHPFGSFV
ASGSLDTNIKLWDVRRKGCVFRYKGHTQAVRCLRFSPDGKWLASASDDHTVKLWDLAAGK
IMFEFTGHTGPVNVVEFHPNEYLLASGSADRTVRFWDLEKFQVVSCIEEEATPVRCVLFN
PDGCCLYSGYQDSLRVYGWEPERCFDVVLVTWGKVADLSICNNQLIGVSVSQSTVSSFVV
DLSRVTKSGSGLHGPIKDDRPLAQPTLTGSSLRRIYDRPSTTCSKPQRVKHNSESERRSP
SSEDDRDEKESKAEIQNPEDYKEIFQPKNSITRTPPRKSEPFPAPPEDEPVIVKEAAKPS
QVVDIQTPLPNQENPDLVQRPPIASSTPVTRAEPSVILAARNAPIGLKASDFLPAVKNQS
QCEIVDEEAMSQIRKGHETMCVVLTSRHKNLDTVRAVWSTGDIKTSVDSAVAINDLSVIV
DLLNIVNQKASLWKLDLCTIILPQIEKLLQSKYESYVQTGCTSLKLILQRFLPLITDILA
APPSVGVDITREERLHKCKLCYKQLKNISNIIKNKSGLSGRHGSAFRELHLLMAVFE
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
atggcagcttctgttgccaccaagacatcttggaagctgcaagagatcacagctcacagc
agcaatgtgtcctcgctggttctgggcaaaagttcaggtcggctgctggcaactggcgga
gaggactgtcgagtcaatatatggtctgttaacaagcccaactgcatcataagtctgaca
ggccacacaacaccagtggagagcgtgaggatcaatacaaatgaagagctcattgtcgca
ggatcccaatcagggtccattcgagtttgggacctggaagctgccaaaattcttcgtacg
ttaatgggccacaaagcaaatatctgcagccttgatttccatccttttggaagctttgta
gcttcagggtccctggacactaacatcaagctctgggatgtaagaagaaaaggctgtgtc
ttcaggtacaagggtcacacgcaagcagtgaggtgtctccgatttagtcctgatgggaag
tggttagcgtccgcttcagatgatcacactgtaaagctgtgggatctggcagctgggaag
ataatgttcgagtttacaggacatacaggcccagtaaatgttgttgagtttcatcccaat
gaatacctcttggcctccggcagcgctgacaggacagtcagattctgggacttggagaag
tttcaagtggtgagctgcattgaagaagaggccactcctgtcaggtgtgttcttttcaac
ccagatggctgctgcttgtacagtggctaccaggattcgctgcgtgtgtatggctgggag
cctgagcgctgctttgatgtggtcttggtgacctggggaaaagtggctgacttatcgatc
tgcaacaaccagctgataggggtttccgtctctcagagtacagtctcctcgttcgttgtg
gacctcagcagagtcacaaagtctggttctggtcttcatggaccaatcaaagatgatagg
cccctggctcagcccaccctcacagggtcctcccttcgacgcatctatgacaggccatcg
actacctgtagcaagccccagagagtgaagcacaactcggagagcgagcggcgcagtccc
agcagtgaagatgaccgggatgagaaggaatcaaaggctgagatccagaatccagaggat
tacaaggagatcttccagcccaagaattccatcactcgaactccaccacgaaagagtgag
cccttcccagcccctcccgaggatgagcctgtcatcgtaaaggaagcagcaaagcccagc
caagttgtggacattcagaccccactgccaaaccaagaaaatcctgacctggttcagagg
ccaccaatagcctcctcaacccctgtgaccagagcagagccatcagtgattcttgcagcc
aggaatgcacccatcgggctgaaggcctctgattttctgccagctgtgaaaaaccaaagc
caatgcgagatagtggatgaggaagccatgtcgcagatccgtaagggccatgagactatg
tgtgtggtgctcaccagccgccacaagaacttggacacggtgcgagcggtgtggagcact
ggtgacatcaagacatctgtggactctgctgtggctatcaatgatctctctgttatagtg
gacctactgaacattgtcaaccagaaggcgtctctttggaaactggatctgtgtactata
atcctgcctcagatagagaagctccttcaaagcaaatatgaaagttacgtacagactggc
tgcacctccttaaagctgattctccagagattcctgccactgatcaccgacattcttgct
gcgccgccgtctgttggggtggacatcacaagagaagagaggctccataagtgcaaactg
tgttacaagcagctgaagaatatcagcaatatcataaagaacaagtctggactgagtggc
cgccatggcagtgccttccgtgagcttcacctcctcatggctgtctttgaatga
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