Trachemys scripta elegans (red-eared slider): 117886642
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Entry
117886642 CDS
T07347
Name
(RefSeq) B-cadherin-like
KO
K06796
cadherin 3, type 1, P-cadherin
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
117886642
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
tst04515
]
117886642
Cell adhesion molecules [BR:
tst04515
]
Cadherins
Major cadherins
117886642
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
CADH_Y-type_LIR
Cadherin_pro
Cadherin_4
TM_ErbB1
Motif
Other DBs
NCBI-GeneID:
117886642
NCBI-ProteinID:
XP_034644527
LinkDB
All DBs
Position
13:complement(4162332..4174469)
Genome browser
AA seq
879 aa
AA seq
DB search
MGPPRGRLPGLCRLLLLLQVGWALGEPAEPCRAGFTLERFTFVVPRAQLLRGQVLGQVRF
EDCTSWKTALYDADDADFRVLADGTVLMRHHTQLHGRGKTFTVDAWDSTGKKFSASVTVK
TQSPHSAQESASDHQAEVLMFPQARPGLQRQKRDWVIPPIRVPENERGPFPKKLVQIKSN
KDKVTKIIYSITGQGADTPPNGVFTIEAKTGWMMVTQPLDREDIDKYHLFSHAVSENGKP
VEEPMEIIITVTDQNDNKPQFTQELFRGSVLEGALPGTSVMQVTATDADDAIETYNGVIA
YSILNQEPKEPHPQMFTIHRATGAISVIASGLDRERVREYTLTLQAADLDGEGLTTTASA
VIEITDTNDNAPVFDPRMYTVAVPENEAGREVQRLTVTDTDEVNTAAWQAVYTIVRGNEG
GFFTITTDRETNEGILQTAKGLDFEVRNQFVLYVAATNEEPFVVKLSTSTATVTVNVEDV
NEAPVFDPPIRTAQVSEDVPIGQKITSYTAQDPDKMQSQTIRYRIGNDPAGWLEIHPENG
IVTAKAQLDREAMFVKNNTYTAIVLAVDDGAPPATGTGTLRLTLLDVNDNGPEPDPREIT
VCNQNPVPQVLTIHDKDLPPNTSPFRAELIHGSGVSWAAEMDSKGETLTLKLLEPLKKDI
YQVYLRLFDNQNKDQLTVLKAEVCNCEGHAEKCPEERLPVLGVPIILAILGAILALLIIL
LLLLLFVRRRNVVKEPLLLPEDDTRDNVFYYGEEGGGEEDQDYDLSQLHRGLEARPEVIV
RNDVVPTLLPAPQYRPRPANPDEIGNFIDENLKAADTDPTAPPYDSLLVFDYEGSGSEAA
SLSSLNSSSSDQDQDYDYLNDWGGRFKKLADMYGGGEDE
NT seq
2640 nt
NT seq
+upstream
nt +downstream
nt
atggggccgccgcggggccgactgcccgggctctgccgcctcctcctcctcctgcaggtg
ggctgggcgctgggcgagccggcggagccgtgccgggccggctttaccttggagcggttc
acgttcgtggtgccccgtgcgcagctgctccggggccaggtcctaggccaagtgaggttt
gaggattgcacgagctggaagacagcgctgtatgatgcagatgatgctgacttccgtgtg
ctggcggatgggacggtcctgatgagacaccacacccagctgcatgggcgggggaagact
ttcaccgtggatgcctgggattccactggcaagaaattctctgcttcagtgactgtgaag
acccaaagccctcactcagcacaggaatctgcttcagaccatcaagcagaggtgctgatg
ttcccacaggccagacctggtctgcagagacagaagagggactgggtgatccctccgata
agagttcctgaaaatgagaggggcccattccctaaaaagctggttcagatcaaatccaat
aaggataaagtgaccaagattatctacagcatcacagggcagggtgcagacacccctccc
aatggcgtcttcaccatcgaggccaagaccggctggatgatggtgactcagcccttggac
agagaagacatcgacaaataccacctcttctctcacgccgtgtctgagaacggcaaaccc
gtggaggagcccatggagatcatcatcaccgtgacggatcagaatgacaacaaaccccag
ttcacccaggagctcttcagaggctcggtcctggaaggagcactgccagggacctctgtg
atgcaagtgactgccacggatgcagatgatgctatcgagacctacaatggggtcattgca
tactccatcctgaaccaagagcctaaggaaccccatccccagatgttcaccatccacaga
gccactggagccatcagcgtgattgcaagtggtctagacagagagagagtgagagaatac
acgctgacgctgcaggctgcagacttggatggggaaggcttaacaaccactgcatccgct
gtgatcgagatcacagacaccaacgacaatgctccagtgtttgaccccagaatgtacact
gtagcagtgccagagaacgaagcgggacgcgaggtccagaggctgaccgtgacggacaca
gacgaggtcaacacggcggcgtggcaggccgtgtacaccattgtgcgaggcaacgaagga
ggcttcttcaccatcaccacggatcgcgagaccaacgaaggcattctgcaaacagctaag
ggcttggacttcgaagtgagaaaccagtttgtcctctatgtggcagccaccaatgaggag
cccttcgtcgtgaagctctcaacctccacggccactgtcacggtgaacgtggaggatgtg
aatgaggcacctgtcttcgacccgcccatccggacagcccaggtctccgaggacgtgccg
attgggcagaaaatcacctcctacacggctcaggacccagacaaaatgcagagtcagacg
atccggtaccgcatcgggaatgaccccgcggggtggctggagattcacccggaaaatggc
attgtaacggcgaaggcccagctggacagggaggccatgtttgtgaagaacaacacctac
acggccattgtgctggcagtggacgatggcgcccctcccgccaccggcacaggcaccttg
cgtctgactcttctggatgtgaacgacaacgggccagagccagaccctcgtgagatcact
gtctgcaaccagaatccagtgccgcaggtcctgaccatccacgacaaggacctgcctccg
aacacctcccccttcagagcagaactcatccacggatctggtgtgagctgggctgcagaa
atggacagtaaaggggagactctcaccttgaagctgctggagccattgaagaaagacatc
taccaagtttacctgcggctctttgacaaccagaacaaagaccagctgactgtcctcaag
gcagaagtgtgcaactgtgaggggcatgcagagaagtgcccagaggaacggctgcctgtt
ctgggagtccccatcattctggccatcctgggggctattctggccctgctgatcatcctg
ctgctgctgctcctcttcgtacggcggaggaacgtggtgaaggagcccttgctgctccca
gaggacgacacccgggacaacgtcttctactacggcgaggagggaggcggcgaggaagac
caggactacgacctcagccagctgcatcgcggcctggaagctcgccccgaagtcatcgtc
cgcaacgacgtggtgccgaccctgctgccagctccccagtatcggcctcgacctgccaac
cccgatgagatcggcaacttcattgatgagaacctgaaggcggccgacactgaccccacc
gccccgccgtacgactccctgctggtgtttgactacgagggcagcggctccgaggcagcc
tcactcagctccctcaactcctcctcctccgaccaggaccaggactatgactacctgaac
gactggggcggccgcttcaagaagctggccgacatgtacggcgggggcgaggacgagtaa
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