Trachemys scripta elegans (red-eared slider): 117886690
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Entry
117886690 CDS
T07347
Symbol
NLRC5
Name
(RefSeq) protein NLRC5 isoform X1
KO
K22615
NLR family CARD domain containing 5
Organism
tst
Trachemys scripta elegans (red-eared slider)
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
tst04054
]
117886690 (NLRC5)
Pattern recognition receptors [BR:
tst04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
117886690 (NLRC5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
Atypical_Card
LRR_6
NLRC4_HD2
LRR_4
LRR_8
NPHP3_N
LRR_NXF1-5
AAA_16
NOD2_WH
AAA
AAA_22
nSTAND3
ATPase_2
DnaB_C
AAA_7
RNA_helicase
Mg_chelatase
AAA_25
AAA_33
AAA_19
Motif
Other DBs
NCBI-GeneID:
117886690
NCBI-ProteinID:
XP_034644598
LinkDB
All DBs
Position
13:36821383..36906389
Genome browser
AA seq
1859 aa
AA seq
DB search
MQPQMEDMDLQRAIANAQPQLVESLSHAPDWLLLKAKCFLPHMDLSPVDGITDRKEKVLL
LLDTLENAGPIIWKRFIQCVCMECNLPMDLEILLMSASGEGNLNQKQEDFAEASTQSPSQ
PTGLERRRHGSSSHPNGKGSKQQRLDSAERYRHLIIASMCQRYENKRAAGAAVLGQAQPP
AFSQAFVNLVIRRSKASRLKERADKSREDSAGMQEAEECVDTAVKVSDLFESVVSSGTTR
VILLFGKPGMGKTMLMHRLCQKWAEGALQQFLFTFLFEFRQLNLISRKLTLKELLFDLVL
QPEDRPDAVFQHLLENAQRMLFIFDGLDEFVGNIGQPSSPCVSPALHRPMSISELFANFC
FGKLLPGCTVLVTSRPKKLPDFLLNRADLLAEIWGFDHEKVEEYASHYFHQHSFKEQAIA
HLKNNSKLLSMCLIPALCCIVCVCLEYLLRKRLSKVELPQTMTQFYIKMLLIFISKQQTE
GTVSEDTQLNHHRTAILGLCDLALKGLEEKKIVFYVDDIPEHVKEFASLHGLLTVFEVKR
SDSLPEAGHAFVHLSLQEFFAALNLMIKNTIDGSYLKKKFSLKSKWTLKNEARTEFMENF
HIFLSGLSSKECRTFLTLLAEQNQAWVRDKQAAILQSLKKLAATNLTGPKIIELCHCTYE
TQDLELAQHVGSQLNLKYEFRNFRLTPLDVSALVFIINCGRDLTHLDFAGCPMELDCLEV
LASCKSIEHLSFRSRKYGDEFAAALSKSLPKIKSLKKLELTGGSITALGLTGLAEVFPNC
FQLEEINLQDNRLRDQDMGKVIEMLSRVEKLKMIDLSHNDISVKSVLTLAKGATTCPNVT
ELHIRRDTVMIYFSGQSRKVLRSNLRRREDKKENAAQIRNVKLRLQDCSLNSQHAGEIAA
LLRGCAHFSEVDLSGNQLGDEGCRQLAESLPEVHISKQLDVSNNQISVDGVCCLLNAVNT
CLNVVEFEASLHHQTAILKFIGDKEFASTHSRDTSHSGDQSGGGESQKSVVSRKIRLTDS
GFPTRDLDKLCTVLKECSSISDLDLSNNSLGDQGVGKLVGLLPELKAVSSLKLSGNQISL
SAVFGLAQCLSALEHIKSIDISLGNAQSVHLTFWESVRNIRTRSAGKFPAHPQHLENDHC
FRLRECTVSPEDMDTLCQILGKCTGLTELELSRNALSDQSIERLLMSLPRLHSLKLLSIR
NNKFSPNCTLLLASSLNLCERIREVEVRSSENAFLHLAGRIESQETSCRLTDCSIGQNEV
EELCRILEQCGRLAELDLSGNHLGNEGLRRLLDRLLQMHVSRLLNLSHNKISQDGVLHLI
NTLSTCRNVTEVQVSLCSKATSLIKFTREDEPRKILRLTECNFQPEHLPKLFSLLQKCTN
LTEYISTNNNMTIRAVEDLLQALRKSLGTLRISIEEQWVRNESITSLLQMAVQPHGNVTE
ITISKDKGLLRVGVGFPCRTEKMESVVSRLNQCGLEAKHIHFLQRVIEKCTQLQELSWSH
IDLNNAEEAMLANMLLTLPTLRKFELTSSSVTPSGMGHLVAGLQQCHAMEELNLGSLGLD
DTAILMLVPGLHKMPLLKRLLLNNNNVGSEGCSHLAEALTNAPHMEEINLSHNKIEHAGL
EKIAMLLPELQNLKRVDLSSNSIGPAGGELLVEALARCRHVEELLLARNHVGDKTAARLS
LSLPSMCHLKILHLQSNNIGSLGGTPLAKGLVECQQLEEISLSENSFGEGAIRTLSEGLP
RFTRLRKIELKLCGISDGVSKHLALGFSRCPVIEEIILSWNSLGDEGALELATVLPQMAR
LRMLDLDNNRIAARGATKLAEELAKCYGIQVIRLWNNPVPKNIEESLTKQDARLHFSFF
NT seq
5580 nt
NT seq
+upstream
nt +downstream
nt
atgcagccccagatggaggatatggatctccagagggccatagcaaacgctcagccacag
ctggtggagtccctgagtcatgccccggattggctgcttctgaaagccaaatgtttcctc
cctcacatggacctgagtcccgtggatgggatcactgaccgcaaagaaaaggtcttgttg
ctccttgacacgcttgagaatgcaggaccgatcatttggaagcggtttatccagtgcgtc
tgcatggaatgcaacctccccatggacctggagatactgctcatgagtgcctcaggagaa
ggtaatttaaaccagaaacaagaagactttgcagaagcaagtactcagtctccttctcaa
cctacaggacttgaaaggcgtcgtcatggaagcagttctcatcccaatggtaaagggtct
aaacagcaacgattagattcagctgaaaggtaccggcatctcatcattgcttcaatgtgc
caaaggtatgaaaataaacgagcagcaggagcagctgtcctgggacaagcacagccacca
gccttcagccaagccttcgtcaacctggtcatccggcggagtaaagcttccagactaaag
gagagagcagataaatccagggaggactcggcaggcatgcaggaagctgaggaatgtgtg
gacacggctgtgaaagtctcagacctgtttgaaagtgtcgttagctcgggtaccacccgg
gttatccttttgtttggcaaaccggggatgggaaagaccatgctgatgcatcggctttgc
cagaaatgggcagaaggagctttgcagcaatttctgtttacttttctctttgagtttagg
cagctgaatctgatcagcagaaagctgacattgaaggagctgttgtttgatttggtcctt
cagccagaagataggcctgatgcagtatttcagcacctcctggagaatgcccagcgcatg
ttgttcatctttgatgggctggatgaatttgtggggaacataggccagccatcctcgccg
tgtgtaagccctgccctccacaggcctatgtccatatctgagctgtttgccaatttctgc
tttggaaaacttctccctgggtgcacggtgctggtcaccagtcggcctaagaaattaccc
gactttctgttaaacagagcagatctgctggcagaaatttggggatttgaccatgagaag
gttgaagagtatgccagccactatttccaccagcattccttcaaagagcaggccatcgct
cacctgaaaaacaacagcaagcttctgagtatgtgcttgatccctgccttgtgctgcatc
gtctgcgtctgtttggaatatttgctgaggaagcgtttgtcgaaggtggagcttcctcag
accatgacccaattttatatcaaaatgctcctcatctttataagtaaacagcagacggag
ggcactgtgagtgaagacacgcagctgaatcaccacaggacggccattttgggcctgtgt
gaccttgcactgaaaggcctggaagagaagaagatagtgttttacgttgatgatatccca
gagcatgtgaaagagttcgcttccctacatgggttgctgactgtctttgaggtgaagagg
agtgacagcctcccagaggccggccatgcctttgtgcacttaagtcttcaggagttcttt
gctgcgctgaacctgatgataaaaaacacaatcgacggaagctacctgaagaaaaagttc
tctctgaagtcaaagtggactttaaaaaatgaagccaggactgagttcatggagaatttt
cacatctttctctcaggcctctcgtcgaaagagtgtcggacgttcctcaccctgttagct
gaacaaaatcaggcatgggtgcgggacaagcaagccgccatcttgcagtcgctgaagaag
ctggcagctactaatctaacggggcccaagataattgaactgtgccattgcacttacgaa
acacaagaccttgaattagcccagcatgtcgggagccagttaaatttaaagtatgaattt
agaaactttagattgacccctctagatgtttcagctttggttttcatcattaactgtggc
cgggatttgactcacttggattttgcaggctgccccatggaattagattgtttggaggtt
ctcgccagctgtaaaagtatagagcatctgagctttaggagcaggaagtatggtgacgaa
tttgcagctgctctttccaaaagcttaccgaagatcaagagtctgaagaaactagagtta
actggtggtagtatcactgccctggggctaactggcctggcagaagtctttccaaactgc
tttcaacttgaagaaataaacttgcaggacaatcgactgagggaccaagacatggggaag
gtgattgaaatgctttccagagtggaaaagttaaagatgattgatttaagccataatgat
atttcggtgaagtctgttcttactttggcgaagggagccaccacttgtccaaatgttact
gaactacatataaggagggacaccgtcatgatatatttttctggccagtccagaaaagtc
ctaagatcaaatttgaggagaagggaagataaaaaggaaaatgctgctcaaataagaaat
gtgaaattacggttacaggattgcagcctcaattcacaacatgcaggggagatcgctgct
cttctcaggggctgcgcccacttctcggaagtggatttatcaggtaaccaacttggtgat
gaaggctgcagacagctggcagagagtctccctgaagtacatatttccaagcagttggat
gtcagtaacaaccagatatctgtggacggtgtttgctgtctgttgaatgccgtgaacacc
tgcttgaatgtggtggagtttgaagccagccttcatcatcagactgcaatcctgaagttt
ataggtgataaagaatttgcctctacccattccagggatacctctcatagtggggaccag
tcaggtggaggtgagagccagaagtctgtggtctcaaggaaaataaggctgacagacagt
ggttttcccaccagagatctggacaagttgtgcactgtattgaaggaatgtagcagcata
tcagacctcgatttgtcaaataattctctgggtgaccagggcgtcgggaagctggttgga
ctccttccggagctgaaggcagtgagttccctaaagctaagtggcaatcagatctccttg
agtgctgtgtttggcttagctcagtgcttatcggccctggaacacattaaatcaatagac
atcagcctgggaaacgctcagtcggtccatttaaccttctgggaaagtgtcaggaacatc
aggaccagatctgcaggaaagttcccggctcatccacaacatttagagaacgaccattgc
tttcgtcttagggaatgcaccgtgagtcccgaggacatggacacgctctgccagatcctt
ggaaaatgcactggactgacagaacttgaattatctagaaatgcgctgagtgatcaaagc
attgaaaggctgctaatgtccctaccacgtttgcacagtctgaagctactgagtattagg
aataacaagttttccccaaattgcactctcttactggccagctctctcaacctgtgtgag
cgaatcagagaagtagaagtcaggtcaagtgaaaatgcttttttgcatttagcggggagg
atagaaagccaagaaacatcctgcaggttaactgactgcagcatcggtcagaacgaggtg
gaggaactctgccgaatccttgaacaatgtggtcgtcttgcggaactggatctctctggg
aatcacctcggcaacgaggggctgagacgcctcttggatcgcttgctccaaatgcacgtt
tcccgcttgctgaacctcagccataacaaaatatctcaggatggagtgctgcatctaatt
aacaccctctccacatgcagaaatgtaaccgaagttcaagtcagtttgtgctccaaggca
acatcactcatcaagttcacaagagaagatgaaccaaggaagattttgagactaacggag
tgcaactttcaaccagaacacctgccaaagctgttctcgctactgcaaaagtgcaccaac
ctgacggagtacatatcaacaaacaacaacatgacaatcagggcggtggaagatctattg
caggcactgaggaaaagtctgggaacactgagaataagcattgaagagcaatgggtgcgg
aatgaaagtatcactagccttctgcagatggctgtccaaccccacgggaatgttacagag
atcacgatatcaaaagacaaaggtctccttcgagtgggcgtggggttcccctgtcgaaca
gagaagatggagtctgtggttagcaggttgaatcagtgtgggctggaagcgaagcacatt
cactttctccagagggttattgagaaatgcacgcagcttcaggaactgagctggtctcat
attgatctcaacaatgctgaagaggcgatgctagccaacatgcttctgactcttccaacg
ctgaggaagtttgagttgacgtccagcagtgttacgccaagcggaatgggacacctggtt
gcggggttgcagcaatgccatgctatggaagaacttaacctcggctccctgggactcgat
gacacggccattctcatgctggtgccaggacttcacaaaatgcctttactgaaaagactc
ctcttgaacaataacaatgtcggtagtgaaggctgctcccacctggccgaagctctgacg
aatgctcctcatatggaagaaatcaatttaagccataacaagattgaacatgctggtctg
gaaaaaatagccatgctcctgccggaattgcaaaatctaaagagagtcgacctgtcgtcg
aacagcattggcccagctggaggggagttgctggtggaggctctggctcgctgcaggcat
gtcgaggagttactattagccaggaaccatgtcggagacaagacggcagcgagactctcc
ctctctctgcctagcatgtgccacttgaagatccttcatctgcagtccaataacattggt
tcacttggaggaacaccgctggccaaaggcctggttgaatgccagcagctagaagagata
agtttgtcagagaacagctttggggaaggcgccatccgcaccctgtcagaggggcttcca
cgattcacccggctcaggaagattgaactgaaactgtgtggaatcagcgatggcgtttcc
aaacatcttgcccttggcttcagtcgttgtcccgtcattgaagagatcatattgtcgtgg
aacagtcttggtgatgaaggtgccctggagctggccacggttctcccacaaatggcaagg
ctgaggatgctagatctggacaataaccgcattgcagctcggggtgccacaaagctagcg
gaggagctcgccaagtgttatggaattcaagtcatacggctttggaacaatccagtaccc
aagaacattgaagaaagtcttacgaagcaagatgcaagattgcatttctcattcttttaa
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integrated database retrieval system
