Trachemys scripta elegans (red-eared slider): 117886845
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Entry
117886845 CDS
T07347
Symbol
SF3B3
Name
(RefSeq) splicing factor 3B subunit 3
KO
K12830
splicing factor 3B subunit 3
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117886845 (SF3B3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tst03021
]
117886845 (SF3B3)
03041 Spliceosome [BR:
tst03041
]
117886845 (SF3B3)
03036 Chromosome and associated proteins [BR:
tst03036
]
117886845 (SF3B3)
Transcription machinery [BR:
tst03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
117886845 (SF3B3)
Spliceosome [BR:
tst03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
117886845 (SF3B3)
Complex B
117886845 (SF3B3)
Complex C
U2 SnRNP specific factors
117886845 (SF3B3)
Chromosome and associated proteins [BR:
tst03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
117886845 (SF3B3)
TFTC complex
117886845 (SF3B3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_BBS7
Motif
Other DBs
NCBI-GeneID:
117886845
NCBI-ProteinID:
XP_034644815
LinkDB
All DBs
Position
13:complement(41226780..41282172)
Genome browser
AA seq
1217 aa
AA seq
DB search
MFLYNLTLQRATGISYAIHGNFSGTKQQEIVVSRGKILELLRPDPNTGKVHTLLTVEVFG
VIRSLMAFRLTGGTKDYIVVGSDSGRIVILEYQPSKNMFEKIHQETFGKSGCRRIVPGQF
LAVDPKGRAVMISAIEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENP
MFACLEMDYEEADNDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEPLEEHGNFLITVPG
GSDGPSGVLICSENYITYKNFGDQPDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSMFF
FLAQTEQGDIFKITLETDEDMVTEIRLKYFDTVPGAAAMCVLKTGFLFVASEFGNHYLYQ
IAHLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDELDSLSPILFCQIADLANEDT
PQLYVACGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHIEDEFDAYIIVSFVN
ATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGDDALVQVYPDGIRHIRADKRVNEWKTPG
KKTIVKCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSADVVCMSLANVPPGEQ
RSRFLAVGLVDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGAEKQDELGERGSI
GFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQEAVLAMSSRSW
LSYSYQSRFHLTPLSYETLEFASGFASEQCPEGIVAISTNTLRILALEKLGAVFNQVAFP
LQYTPRRFVIHPESSNLIIIETDHNAYTEATKAQRKQQMAEEMVEAAGEDERELAAEMAA
AFLNENLPESIFGAPKAGNGQWASVVRVMNPIQGNTLDLVQLEQNEAAFSVAVCRFANAS
DDWHVLVGVAKDLILNPRSVAGGFIYTYKLVNNGEKLEFLHKTPVEEVPAAIAPFQGRVL
IGVGKLLRVYDLGKKKLLRKCENKHIANYISGIQTIGHRVIVSDVQESFIWVRYKRNENQ
LIIFADDTYPRWVTTATLLDYDTVAGADKFGNICVVRLPPNTNDEVDEDPTGNKALWDRG
LLNGASQKAEVIMNYHVGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDF
FQHVEMHLRSEHPPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSMEPNKQKNVSEELDRT
PPEVSKKLEDIRTRYAF
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgttcctttacaatttaacgttgcagcgagccactggcatcagctatgccatccatggc
aatttctcaggaaccaaacaacaggaaattgttgtttcccgggggaagatcctggagttg
ctccgccctgatccaaacacagggaaagtacacaccttgctgacagtggaagtgtttgga
gtcattcgttccctcatggccttcagactgacaggtggaaccaaagattatatcgtggtg
ggtagtgattcgggtcgcatcgttatcctggagtaccagccttccaagaacatgtttgag
aagattcaccaggaaacctttggcaagagtggctgtcgcagaatcgttcctggccagttc
ttggctgtggacccaaagggccgtgctgtcatgatcagtgccattgagaaacagaagctg
gtatacatcctgaacagagatgcagctgcccggctcaccatttcttccccactggaagcc
cacaaggccaacaccttggtctaccacgtggtgggagtagatgtggggtttgaaaaccca
atgtttgcttgtctggagatggactatgaggaagctgacaacgatccaacgggagaagca
gcagctaacacccaacagaccctgacattttatgagttagacctgggtttgaaccacgta
gttaggaaatacagtgaacctttggaggagcatggcaacttccttataacagttcctggt
ggctccgatggtcccagcggggtgctgatctgttctgaaaactacatcacctacaaaaac
ttcggtgaccagcctgatatcagatgtcccattcctaggagaaggaatgacttggatgac
ccagagaggggtatgatttttgtctgctctgctacacacaagaccaaatccatgttcttc
ttcctggcccagacagagcagggagatatcttcaaaatcaccctagagactgatgaagac
atggtgacagagatccgactgaagtattttgatactgttcctggggctgctgccatgtgt
gtgctgaaaacagggttcctctttgtggcatctgagtttggaaaccattacctgtaccag
atagcccatctgggagatgatgacgaggagccggagttctcctccgccatgcccctggag
gaaggagacactttctttttccagccacgaccactcaagaacctggtgttggtggatgag
ctggacagtctgtctcctatcttgttttgtcagatagcggatctggcgaacgaagatacg
ccccagttatatgtggcctgtggacggggacctcggtcatctctgagggtcctaaggcac
ggacttgaggtgtctgaaatggccgtctcagagctgcctggtaaccccaatgctgtttgg
actgtgaggagacacattgaagatgaatttgatgcctatattatcgtgtccttcgtaaat
gccacgctggtgctgtctatcggagagactgtagaggaagtgactgactctggattcctg
ggtaccacccccactttgtcctgttccttgttgggggatgatgctttggtacaggtttat
ccagacggcattcggcacatccgagcagacaaaagggttaatgaatggaagacaccagga
aagaaaaccatcgtaaagtgtgctgtgaaccagagacaagtggtgatagcactgactgga
ggagaattagtctactttgagatggacccatcaggacagctgaatgaatacacggagagg
aaggagatgtcggccgatgtggtgtgcatgagcttggccaacgttcctcctggggagcag
cgttcccgctttcttgctgtcgggttggtggacaacactgtcagaattatttcccttgac
ccttcggattgcttacagcccttgagtatgcaggccctccctgcacagccagaatcactg
tgtatcgtggagatgggtggggcagaaaaacaggatgagctgggcgagaggggctccatt
ggcttcctgtacctgaacattggattacagaacggtgtgctgctgcgaactgtcctggat
ccagtcactggagatctttctgataccagaaccaggtaccttggctcacgccccgtgaaa
ctcttcagagtccgaatgcaaggccaagaggcggtgctggccatgtccagtcgctcatgg
ctgagttattcttatcagtcccgctttcatctaacccccctgtcctatgagactctagag
tttgcatccggcttcgcttctgagcagtgtcctgagggcattgttgctatttccacaaac
acattgaggattttggcgttggaaaagctgggggcagtcttcaaccaggttgccttcccg
ctgcagtacacccccaggaggttcgtcattcaccctgagagcagcaacctgatcatcatc
gagacagaccacaatgcttacaccgaggccacgaaggcccagaggaagcagcagatggct
gaggaaatggtggaggctgcaggtgaggacgagagggaactggccgcagagatggcagcc
gcctttctgaatgagaaccttcccgagtccatcttcggtgctcccaaggcaggcaatggc
cagtgggcctctgttgtccgagtgatgaaccccatccagggcaatactttagatctggtc
caactagagcagaacgaagctgccttcagtgtggcagtgtgccgattcgccaacgccagt
gacgactggcatgtgctggtgggagtggccaaggacctgattctgaacccccggtcggtg
gctggtgggtttatctacacatacaagctggtgaataatggcgagaagctggagttccta
cacaagacccctgtggaggaggtacctgcagccattgccccattccaaggccgagtctta
attggagttggaaaacttttacgtgtatacgacctgggcaagaagaagctgcttcggaag
tgtgagaacaagcacattgccaactacatctccggcatccaaaccattgggcacagagtg
atcgtgtcggacgtccaggagagcttcatttgggtgcgctacaagaggaatgagaaccag
ctgatcatctttgccgatgacacctacccccggtgggtcaccaccgccaccctccttgac
tatgacactgtggccggagcagacaagtttggcaacatctgtgtggtgaggctgcctccc
aacacaaacgatgaggtagacgaggatccgacaggcaacaaggctttgtgggacagaggg
cttctcaatggagcgtcgcagaaggctgaagtgattatgaattaccacgtgggagagacg
gtgctgtcgttacagaagaccacgctgattcctggagggtctgagtctctcgtgtacacc
accttgtcagggggcattggtatcctggtccccttcacgtcccacgaggatcatgacttc
ttccagcacgtggagatgcatctgagatcggagcatccccctctctgtggacgggaccac
ttgagcttccgctcctactacttcccagttaagaacgtgattgacggggacctttgtgaa
cagttcaactccatggaacccaacaaacagaagaacgtctcggaagagctggacaggacc
ccccccgaggtgtccaagaagctggaggatatccgcacacgctacgccttctga
DBGET
integrated database retrieval system
