Trachemys scripta elegans (red-eared slider): 117887048
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Entry
117887048 CDS
T07347
Symbol
TRIM28
Name
(RefSeq) transcription intermediary factor 1-beta
KO
K08882
tripartite motif-containing protein 28 [EC:
2.3.2.27
]
Organism
tst
Trachemys scripta elegans (red-eared slider)
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
tst01001
]
117887048 (TRIM28)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
tst04121
]
117887048 (TRIM28)
Enzymes [BR:
tst01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
117887048 (TRIM28)
Protein kinases [BR:
tst01001
]
Serine/threonine kinases: Other
TIF1 family [OT]
117887048 (TRIM28)
Ubiquitin system [BR:
tst04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
117887048 (TRIM28)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-B_box
ANCHR-like_BBOX
zf-RING_5
zf-RING_UBOX
PHD
zf-RING_2
zf-C3HC4
YaaC
Motif
Other DBs
NCBI-GeneID:
117887048
NCBI-ProteinID:
XP_034645173
LinkDB
All DBs
Position
14:41767093..41824495
Genome browser
AA seq
836 aa
AA seq
DB search
MSGSAASAEAGGPGGEKRPEALEVLEKCGVCRERLRAEREPRLLPCLHSVCRECLRAEPA
PAADGEAANNKEGQVVDCPVCKHQCYLKDIVENYFLRDSGAEAATDSKDANQCCTSCDDN
APATSYCVECSEPLCETCVEAHQRVKYTKDHTVRSTGPSKSKEGERTVYCSVHKHEPLVL
FCDTCDTLTCRDCQLNAHKDHQYQFLEDAVRNQRKMLAALVKRLGDKHANLQKSTKEVRT
SIRQVTDVQKRVQVDVKMAILQIMKELNKRGKVLVNDAQKVTEGQQEKLERQHWAMTKLQ
RHQEHILRFASWALESDNNTALLLSKKLIYFQLHRALKMIVDPVEPQGDMKFQWDLNAWT
KSAETFGTIVSERSGTLQAAAPNAQIQRANATGPAAAGGGVKQVSGTPQGVQQVSMQSTI
VSKGQLAPGALLQPIVSSNSQADCFISEGSALASSAVQPMDTQEEGIGDLDSTEAHVSGM
KRPRPSDGNVMRKVPRVSLERLDLDLTADSQPPVFKVFPGNSNEDYNLIVIERGAQQAAA
QPPSSILPGAIVKEEQMEAAIDYPAEDPRDTKPVVLPQDVLAAEGSVSRLISPSGSIGSS
LDVTPGQSQEGAMEAANAAHCRVCRKAGSVVMCNQCEQCYHLDCHLPVLQEIPSQEWKCL
LCQELPAPGEEDGTNFSASEDEGPNKLSPLEQRKCERVLLELLCHEPCRPLHRLSTATEG
QDTIDLTLIRARLQEKLSPPYGSSEEFAQDVWRMIKQFNKLTEDKEDVQSIIGLQRFFEA
KWSAAFGDRKFSSALVEPIPLDEQRSESGSSFTHRSSPAGSLGEAPAASAGAGEEE
NT seq
2511 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggctcggcggcctcggccgaggcgggcggccccggcggggagaagcggcccgag
gcgctggaggtgctggagaagtgcggcgtgtgccgcgagcggctgcgggccgagcgggag
ccccgcctgctgccctgcctccactccgtctgccgggagtgcctgcgggccgagccggcc
cccgccgccgacggggaggccgccaacaacaaagagggacaagtggtggactgccctgtg
tgcaaacaccagtgttacctcaaggacatcgtggagaactacttcctgagagacagcggg
gcggaggcagccacagacagcaaggatgccaaccagtgctgcaccagctgtgatgacaac
gcccctgctaccagctactgtgtggagtgctcagagccgctgtgcgagacgtgtgtggaa
gcccaccagagggtgaagtataccaaggaccacacggtcagatccacaggcccgtcaaag
tcaaaggagggtgagcgcacagtctactgctccgtgcacaagcatgagcccctggtgctg
ttctgtgatacctgtgacactctgacctgtagggactgccagctcaacgcccacaaggat
caccaataccagttcttggaggatgctgtcaggaatcagcgcaagatgctggctgcactg
gtgaagcgcctgggggacaagcatgccaacctgcagaaatccaccaaggaagtgcgcacc
tcgatccggcaggtgacggatgtgcagaagcgggtgcaggtggacgtgaagatggccatc
ctgcaaatcatgaaggaactcaacaagcggggcaaggtgctcgtcaatgacgcacagaaa
gtgactgaggggcagcaggagaagctggagcgccagcactgggccatgaccaagctgcag
cgccatcaggagcacatcctgcgtttcgcctcctgggccctggagagtgacaacaacact
gccctgctgctttccaagaaactgatctacttccagctgcatcgtgccctcaagatgatc
gtagaccccgtggagccccagggggacatgaagttccagtgggatcttaacgcctggacc
aagagtgcggagaccttcggaacaatagtctcagagcggagcggcaccctgcaggccgcg
gcccccaacgcgcagatccagcgtgccaatgccaccggcccggcagcggcaggaggaggg
gtgaaacaggtctccggcactccccagggtgtgcagcaagtctcgatgcagtccaccatc
gtcagcaagggacagctggccccaggagccctactgcagcccatcgtttcttccaacagc
caggcagactgcttcatcagtgagggtagcgccctggcatcctccgctgtgcagcccatg
gacacccaggaggaaggcattggagatctggacagcaccgaggcccacgtatcgggaatg
aagaggcccagaccctcggacggcaatgtcatgcgcaaggtgccgcgggtgagcctggag
cggctggacctggacctgacagccgacagccagccgcctgtcttcaaggtcttccctggc
aacagtaacgaggactacaacctgatcgtcattgagcgtggggcccagcaggctgccgcc
caaccccccagcagcatcttgcctggagccatagtcaaggaggagcagatggaggcagca
atcgattatccggcagaggatcccagagacaccaagcccgttgttctaccccaggacgtc
ctggccgccgagggctccgtgtctcgcctcatctcccccagcggcagcatcggctccagt
ctggacgtgacaccaggccagagccaggagggggccatggaggcagccaatgctgcccac
tgcagagtgtgccgtaaggcaggctccgttgtgatgtgtaaccagtgtgagcagtgctac
catttggactgccacctcccggtgctgcaggagatccccagtcaggagtggaagtgtctg
ctgtgccaggaactgccagcgcccggtgaggaggacggcaccaacttctccgcctcggaa
gatgagggccccaataaactctcccccttggagcagaggaagtgtgagcgtgtcctgctg
gagctgttgtgccatgagccttgccggcctctccaccggctttcgaccgccacggagggt
caggacaccatcgatctgaccctgatccgagccaggctgcaggagaagctctccccaccc
tacggctcctccgaggagtttgcccaggatgtctggcggatgatcaagcaattcaacaag
ctgacggaggacaaggaggatgtccagtccatcattgggctgcagcgcttcttcgaggcc
aagtggagcgccgccttcggcgaccggaagttctcctcggcgctggtggagcccatcccg
ctagatgagcagcggagcgagagtggcagcagcttcacccaccgcagctcccctgctggc
tccctgggcgaggcccccgctgcctcggcaggcgctggggaggaggagtga
DBGET
integrated database retrieval system
