Trachemys scripta elegans (red-eared slider): 117887113
Help
Entry
117887113 CDS
T07347
Symbol
BOC
Name
(RefSeq) LOW QUALITY PROTEIN: brother of CDO
KO
K20020
brother of CDO
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
117887113 (BOC)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
tst04515
]
117887113 (BOC)
Cell adhesion molecules [BR:
tst04515
]
Immunoglobulin superfamily
Other
117887113 (BOC)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ig_3
I-set
Ig_2
fn3
ig
FN3_DSCAM-DSCAML_C
ISET-FN3_linker
Pur_ac_phosph_N
V-set
C2-set_2
Ig_4
Ig_5
Fn3_VIN3
C1-set
Y_Y_Y
DUF7042
Motif
Other DBs
NCBI-GeneID:
117887113
NCBI-ProteinID:
XP_034645249
LinkDB
All DBs
Position
1:complement(149645752..149728301)
Genome browser
AA seq
1099 aa
AA seq
DB search
MTMTPGRKRPMAAVACLILAAAGCFANLGESLQVTVQPASTVQKYGGLVSLGCVVEPPKV
NVTWRLNGKELVGSDEALGIHIELGKLIIMALNNHTVGRYQCIARMPEGVVASVPATVTL
AKIKDFKFDGQHVIEVDEGNTAVIACDLPESHPKAQVRYSVKQEWLEASRDNYLIMPSGN
LQIVNASQEDEGTYKCAAYNPVTQEVKTSVSSDRLRVRRSTAEAARIIYPPEAQTIIVIK
GQSLILECVASGIPPPRVTWAKNGSSISGYNKTRFLLSNLLIDATSEEDSGTYSCMADNG
VGEAGAVFIFYNVQVFEPPEVTMELSQQIIPWGQSAKFTCEVRGNPLPSVMWLRNAVPLS
SNHRFRLSRKALRVMSVGPEDDGIYQCVAENEVGSAQAMVHLRTAQPGSTMKPWQDSRLG
SAQSPTPPSSDKALKEKAMLQRPKPTALEASLQCMTNRVHVSPAEAPIILSSPRTSKTDC
YELVWRPRHDGRAPILYYTVKHRKIMNSSANWTVRDIPATQHRLTLSRLDPGSLYEVEMA
AYNCAGEGQTAMVTFRTGRRPKPDIVASKEQQIQRDDPGTSTQSSSHLDNSRLSPPEAPD
RPTISTASETSVYVTWIPRGNGGFPIQSFRVEYKKLKKLGDWVLATSDIPPSRLSVEITG
LEKGTSYKFRVRALNILGESDPSAASKPYVVSGYSNRVYERPVTGPYITFTDAINETTIM
LKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDVVEGDRYWHSISHLQPETSYDIKM
QCFNEGGESEFSNVMICETKARKSLGLPGRLPPSTVPPQQHPPLSGGHSGLGTGAMVARS
SDLPYLIVGVVLGSIVLIIVAFIPFCLWRAWSKQKQTIDLGFSGTGLLVSSCQYTMVPLR
GVPTPRANGQPYANGQPYANGVLNGGCPSGGTGYPSTKSRDYSPDEVHQDETNTLLQGRV
LQNGTVQEHYPTSRLSDARPEDSSFLYSLPDDSTNQLLQPHDDCCHLQEQLVGLHHPVTG
CKMGGPSLEALRDLTFHRGTPCCLGLVPVEEVERLDCCQLRGERCPQNPAITCLGQDPTR
HLSSSPPRHMPFETPPPTS
NT seq
3300 nt
NT seq
+upstream
nt +downstream
nt
atgacaatgaccccgggaaggaagagaccaatggctgccgtcgcctgcctgatcctagca
gctgctggctgctttgctaatttgggtgaatctcttcaggtcaccgtccaacctgcttcc
accgtccaaaagtatggtggcttggtgagcctggggtgtgtggtagagcccccgaaagtc
aacgttacctggaggctgaatgggaaggagctggtggggtcggatgaggcgctggggatc
cacattgagctggggaagctcatcatcatggctctcaacaaccacactgtgggccggtac
cagtgcatcgcccgcatgccggagggagttgttgccagcgtcccagccacagtgacttta
gccaagatcaaagacttcaaatttgatggccagcatgtgattgaagtggatgaagggaac
acagctgtgattgcatgtgacctgcctgaaagccaccccaaagcccaagtgcgctatagt
gtgaaacaggagtggctggaggcctccagagacaactacctgatcatgccgtctgggaac
cttcagatagtcaatgccagccaggaggatgaaggaacgtacaaatgtgctgcctacaac
cccgtgacccaggaagtgaaaacctccgtctccagtgacagactccgcgtgcgacgctcc
acagcagaggcggcacggataatctatcccccggaggctcagaccatcatcgtcatcaaa
ggtcaaagcctcatcctggaatgtgtggctagcgggatcccgcctccccgggtcacctgg
gccaagaacggctccagtatttctggctacaacaagacccgcttcctgctcagcaacctg
ctgatcgacgccaccagcgaggaagactccggcacctacagctgcatggctgacaatggg
gtgggcgaggctggagccgtgttcatattctataacgttcaggtgtttgaacctcctgag
gtcaccatggagctgtcccagcagatcatcccctggggtcagagtgcaaagttcacctgc
gaggtgcgagggaaccccctgccctcggtcatgtggctgcgcaatgccgtgcctctctcc
tccaaccaccggttccggctgtcccgtaaggccctgcgggtgatgagtgtggggcctgag
gatgacgggatatatcagtgcgtggcagagaatgaagttggcagtgcacaagccatggtg
caccttaggaccgcccagcctggatcaactatgaagccatggcaagactccaggttgggc
tcagctcagtcccccacgccaccgtccagcgacaaggctctgaaggagaaagccatgctg
caaaggcctaagcctactgcgctggaagcatctctccagtgcatgactaacagagtgcat
gtgtctccggccgaggcgcccatcatcctcagttctcccaggacgtccaagacggactgc
tacgagctggtgtggagaccacgacatgatggcagggcccccatcctttactacactgtg
aagcatcgcaagattatgaactcttcagccaactggacggtcagggacatccctgcgact
caacaccgcctgaccctgagcagactggatcctgggagcttgtatgaggtggagatggca
gcttataactgtgcaggggagggacagacggccatggtgaccttcaggactggccgacga
ccaaaacccgacattgtcgccagtaaagagcagcagatccaaagggacgacccaggcact
agcactcagagcagcagtcatctggacaacagccgcctctcccctcccgaggcaccagac
cgccctaccatctccacagcatcggagacatctgtctatgtgacctggatcccccgcggg
aatggagggttccccatccagtctttccgagtggagtacaagaaactgaagaagttagga
gactgggtgctggccaccagcgacatccccccctctcggctctcagtggaaatcacaggc
ctggagaaaggcacttcctataagttccgtgtccgggcgctgaacatactgggggagagc
gaccccagcgccgcatctaagccgtacgttgtgtcgggatacagtaaccgagtatacgag
cgccccgtcaccgggccttacataaccttcaccgatgccatcaatgagaccaccatcatg
ctgaaatggatgtacatcccagccagtaacaacaacacccccatccatggcttttacatc
tactaccgccccaccgacagcgacaacgacagtgactacaagaaggacgtggtggaaggg
gaccggtactggcactccatcagccacctgcagccagagacctcctacgacatcaagatg
cagtgcttcaacgagggcggcgagagcgagttcagcaatgtgatgatctgtgaaaccaaa
gctcggaagtctcttgggctgcctgggcgccttccaccctcaacagtgcccccacagcag
catccaccgctcagtggtgggcacagcgggctggggactggtgccatggtggcccgctcc
agtgatctgccctacctgattgtaggggtagtgctgggctctatcgtcctcatcattgtg
gccttcatccccttctgtctgtggagagcctggtccaagcagaaacagaccatagacctg
ggcttctctggaacggggctgctggtgtcctcctgccagtacaccatggtgcccctgcga
ggggtccccactcctcgagccaacgggcagccctatgccaacgggcagccctatgccaat
ggtgtgctgaacggcggctgcccctcaggtgggacaggctacccaagcacaaagtcccga
gactacagtccggatgaagttcaccaggatgagaccaacaccttactgcaggggagggtg
ctgcaaaatgggactgtccaagaacactatccaacctcccggctctctgatgctagacca
gaagacagttccttcctctatagcctcccagatgactccaccaaccagctgctccagcca
catgatgactgctgtcatcttcaggaacaacttgttggcctacatcacccagtgacagga
tgcaagatgggaggccccagcctggaagccctgcgagatctcacgttccacagaggtacc
ccttgctgccttggcctggtgccagttgaagaagtagagaggctagattgctgccagctc
agaggagaacggtgtccccagaacccagccatcacctgtttggggcaggacccaacgagg
catctgagcagcagccctccacggcacatgccctttgagactcctcctcctaccagttag
DBGET
integrated database retrieval system
