Trachemys scripta elegans (red-eared slider): 117887275
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Entry
117887275 CDS
T07347
Symbol
HELZ
Name
(RefSeq) probable helicase with zinc finger domain isoform X1
KO
K25168
helicase with zinc finger domain [EC:5.6.2.-]
Organism
tst
Trachemys scripta elegans (red-eared slider)
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tst03019
]
117887275 (HELZ)
Messenger RNA biogenesis [BR:
tst03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
Other 5'-3' decay factors
117887275 (HELZ)
3'-5' decay
Other 3'-5' decay factors
117887275 (HELZ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
zf-CCCH
AAA_19
UvrD-helicase
AAA_30
ResIII
PhoH
PAM2
zf_CCCH_4
Mov-10_helical
AAA_22
zf-CCCH_4
AAA_7
AAA_16
Bac_DnaA
AAA_5
Motif
Other DBs
NCBI-GeneID:
117887275
NCBI-ProteinID:
XP_034645577
LinkDB
All DBs
Position
14:27503056..27642497
Genome browser
AA seq
1944 aa
AA seq
DB search
MADRRPEKSCEQACESLKQQDYEVAVKHCTEALLSLSQYPPAHFPEACQAEIDRIKIESL
LYRIASFLQLKNYGQADEDCRHVLGEGLAKGDGSFRAVLCCMHLKGKLQVVSNVLSKSLM
GESLNGMVTKDLTRLKMLLAETEASASKVPSGYHGEDLEDGSQDGWQFRPPPRGVTSSEE
YTLCKRFLEQGICRYGAQCTSAHSQEELTEWQKRYASRLIRLKQQKENKQCSGSYMETLI
EKWMNSLSPEKVLSECVEGVRVEHNPELSVTVTTKKSQQTWTFVLTCKPARMLYRVALLY
DAHRPHFNIVAISAGDSTTQVSQEVPENCQEWIGGKMAQNGIDHYIYKVSIAFNTEIFGT
FRQTVVFDFGLEPVLMQRVMIDAASTEDLEYLMHARQQLLTTAKRWDSTSKTIVDFEPNE
TTELEKSLLIRYQIPLSADQLFTQSVLDKSLTKTNYQSRLHDLLYIEEIAQYKEVSKFNI
KVQLQIVASFMLTGVSGGAKYAQNGQLFGRFKLTETLSEDTLAGRLVMTKVNAVYLLPVT
KEKSVQTQGTKEKVYEAAIEEKTKDYIFLRVSRECCEELNLRADCEMQVELQFQLNRLPL
CEMHYALDRIKDNSILFPDVRMTPTIPWSPNRQWDEQLDPRLNAKQKEAVLAITTPLSIQ
LPPVLIIGPYGTGKTFTLAQAVKHILQQQDTSRILICTHSNSAADLYIKDYLHPYVEAGN
PQARPLRVYFRNRWVKTVHPVVHQYCLISSTHSTFQMPQKEDILRQRVVVVTLNTSQYLC
QLDLEPGFFTHILLDEAAQAMECETIMPLALANKNTRIVLAGDHMQLSPFVYSEFARERN
LHVSLLDRLYEHYPAEFPCRILLCENYRSHEAIINYTSDLFYEGKLMASGKQPAHKDFYP
LTFFTARGEDVQEKNSTAFYNNAEVFEIVERVEELRRKWPVAWGKLDDGSIGVVTPYADQ
VFRIRAELRKKRLSDVSVERVLNVQGKQFRVLFLSTVRTRHTCKHKQTPIKRKEQLLEDS
TEDLDYGFLSNYKLLNTAITRAQSLVAVVGDPIALCSIGRCRKFWERFIALCHENESLHG
ITFEQIKAQLEALELKKTYVLNPLAPEFIPRALRQQHSANTNKQQQSPPKGKGHHHNQND
HFQTDGIVQPNPSVLIGNPIRAYTPPPPPPPLGPHPNLGKSPSPVQRIDPHTGTSILYVP
AVYGGNMVMSVPLPVPWTGYQGRFAVDPRIITHQAAMAYNMNLLQAHGRGSPIPYGLGHH
SPVSIGQQQLQHQEKEQHEQNRNGKTENSAGPEINKIRTPEKKPVESKQVDVEGNSQNRS
PESRSSVGYPNSKFHRKDNLNPRQLNLHLTPPHTQYAVPSRHYQHLSQIPRQPYPVQQQQ
NLLSQQQNHLPEQQNQIPPQQSQVVQQHNHVNQQPPQPSQLSPAYQMGPNQSFFNNPIPH
RPHSPAVDAVISEHHPPPMLQEVSNPLRPIIAQHNPMLPSHLNNFIEENPAGMPIGETLD
RMHGNVALETLRQQQQARLQQWNEHNAYLSQGNLPYPHHHHPHLQHLPQQPIGLHQQPVR
ANWKLASNTEDETEATYSRFQDLLRELSHRDQSESRDLAEMPPPQSRLLQYRQVQPRSPP
ALPSPSCNSNHSGHFPNFTENNRDIEMSNNPAFQQHLPQIYNPPFSLPSEHITPPPLKYL
QPDGSWTYANLQQNHLMGQGFHYGIPPLPHRSQQNPFIQIQNHQHAVGQEPFHPLTSRAV
SASSLHSLEEYEPRGPGRPLYQRRISSSSVQACSEDFNTPQDNLGQCKELQDHSNQSSFN
YSSPELWVNSTSSAPYQNIPCNGSNRAVPPRELLAPPKTVKPPEDHLKAENIQLSNSFNY
NMLQHLGQFPPLMPNKQIVESNSNSQQNAGGNKPAMSYASALRAPPKPKPPPEQAKKNSD
PLSLFQELSLGSSSGSNGFYSYFK
NT seq
5835 nt
NT seq
+upstream
nt +downstream
nt
atggcagacagaagaccagagaagtcatgtgaacaagcatgtgaatcacttaaacagcag
gattatgaagtggctgtgaagcactgcacggaggcactcctttccctcagccagtacccc
ccagctcacttcccggaggcatgccaggctgaaatcgaccgcataaaaattgagagtctt
ctctatagaattgcttcttttttacaacttaaaaactatggacaagcagatgaagactgt
aggcatgtgctgggagagggactggccaagggagatggctctttccgtgcagtgctttgc
tgcatgcatcttaaagggaagctgcaagttgtatctaatgttctttccaaatcactgatg
ggtgaatcattgaacgggatggtaactaaagatttgacaagactaaaaatgcttcttgct
gaaacagaggcatcagctagcaaagtaccctcaggataccatggggaagatttggaagat
ggctctcaggatggttggcaattccgccccccacccaggggtgtcacaagtagtgaggag
tacacattgtgtaagagatttttagagcaagggatctgcaggtacggtgcacagtgtact
tcagcacattcccaggaagagctaacagaatggcaaaaacgatacgcttcccgcttgata
agattaaaacaacagaaggaaaacaaacaatgttcgggtagttatatggaaaccttgatt
gagaaatggatgaattcgttatctcctgagaaagtgcttagtgaatgtgtagaaggagtg
agagtagagcataatcctgaactatcggttactgtcaccaccaaaaagtctcaacaaacg
tggacatttgttctcacttgtaagcctgcaagaatgctgtatcgagtggcattgctttat
gatgcccatcgtcctcatttcaatatcgttgcaatatctgctggagacagcactacccag
gtatcacaagaagtcccagaaaactgtcaggaatggataggaggaaagatggcccaaaat
ggaatagatcattacatttacaaagtcagtatagcctttaacacggaaatctttggaaca
tttcgccaaaccgtagtgtttgattttgggttggaaccagtactcatgcaacgagtaatg
attgatgctgcttcaacagaagatcttgaatacctgatgcatgcacggcaacagttacta
actacagctaagcgttgggattctacttctaagactattgtagattttgagcctaatgaa
actactgaattggagaagagccttcttatcagataccaaattcctctatctgctgaccag
ctgtttacacagtctgtcctggacaaatcattgaccaagaccaactatcagtcacggttg
catgacctcctttatattgaggaaatagcacagtataaggaagtcagcaagttcaacata
aaagtgcaattgcagattgtagcaagcttcatgctcactggtgtatccggaggtgcaaag
tatgcccaaaacggacaactttttggccgctttaagctcactgaaacgctttctgaagac
actttggctggacggctggtgatgaccaaagtcaatgctgtttatttattgccagtcact
aaagagaagtcagtacagacccaaggaaccaaagagaaggtttatgaagcagctattgaa
gagaaaacaaaggattatatcttcttgagggtatccagggaatgctgtgaagaacttaat
cttcgagcagattgtgaaatgcaggttgaacttcagtttcagttaaatcgcttacccctc
tgtgaaatgcattatgccttggacaggatcaaggacaacagtattttgtttccagatgtc
cgcatgactcccaccataccctggagccccaacagacaatgggatgagcagttggaccct
cgactaaatgcaaagcagaaagaggctgttctggctatcacaactccactttcgatacaa
ctgcctcctgttcttatcatcggtccctatgggacaggcaaaacattcactctggctcag
gcagtcaagcacatactccaacagcaggatactagcaggattctcatttgcacccattct
aatagtgctgctgatctctacataaaggattatttacatccatatgtagaagcaggcaat
ccccaggcgagacctctcagggtatatttcagaaatcgctgggtaaagactgtccaccca
gtagtgcatcaatactgtttgatttcaagcacacattccacctttcagatgccacagaaa
gaagatattcttagacaacgagtagtagttgttactttgaatacttcacagtatctatgt
caactggatcttgaacctgggttttttacgcatattctattagatgaagctgcgcaggcc
atggagtgtgagacgatcatgcctctagcattagctaataaaaacacaagaatcgtcttg
gctggagaccatatgcaactcagtccttttgtctacagcgaatttgccagggagagaaat
cttcatgtttcattacttgatcggctctatgagcactaccctgcagagtttccatgcagg
atcttgctgtgtgagaactatcgctcccatgaagctatcatcaattacacatctgacctt
ttctatgagggcaaattgatggcaagtggaaagcagccagcacacaaagatttctaccct
ttgactttcttcacagcacgcggagaagatgtgcaggagaaaaacagtacagctttctac
aacaatgcagaggtatttgaaatagtagaacgtgttgaagaattgagaagaaaatggccg
gtagcttggggaaaattggatgatggcagtataggggttgtaacaccatatgctgatcaa
gtgttccgaattcgggcagaacttcgaaaaaagagattatctgacgtcagtgtagaaaga
gtgctaaatgttcagggaaagcagtttagagttttgtttctcagcacagtacgaacacgg
catacgtgcaaacacaagcaaacaccgatcaaaaggaaggagcaattattggaggattca
acagaggacttggattatggttttctgtccaattacaaacttctcaacactgccattaca
agagcacagtccctggtagctgtggtgggagacccaattgctttatgttccattggaaga
tgcaggaaattttgggagaggtttattgccttgtgtcacgagaatgagagcctccacggt
atcacgtttgaacagatcaaggctcagttggaggctttggagttaaagaaaacctatgtg
ttgaatccactggcacccgagtttatccctcgggctttgcgacagcagcattcagcaaat
accaacaaacagcaacaatcaccacccaagggcaagggccatcatcataatcagaatgac
cattttcaaacggatggaattgttcagcccaatccttctgtcctaattggaaatcctatc
agagcgtatactcctccccctcctcctcctcctcttggacctcatcccaacctggggaaa
tctccaagccctgttcaaaggatagatcctcacactgggacaagtattctttacgtacct
gctgtctatggaggaaatatggtcatgtctgtgcctttacctgtaccgtggacagggtat
cagggtaggtttgcagttgaccctcgaatcattacgcaccaagcagctatggcatataat
atgaacctgttacaggcgcatgggcgcgggtctcctataccttatggcctgggacatcat
tcaccagttagtatagggcagcagcaacttcaacatcaagaaaaggagcaacatgaacaa
aatcgaaatggtaaaactgaaaacagtgctggacctgaaattaataaaattcggacacct
gagaaaaaacctgtggaatccaaacaggttgacgtagaaggaaattcccaaaatagaagc
ccagagtcacgttccagcgttggttatcctaattctaaatttcatcgcaaagataatctc
aaccctaggcagctgaatctacatctcacccctccccatacacagtatgcagtccccagt
cgccactaccagcacctgtcccagatccccaggcagccataccctgtgcaacagcagcaa
aatcttttaagtcagcaacaaaatcatttgcctgaacagcaaaaccaaataccaccccag
cagagccaggtagtccagcagcataatcatgtaaatcagcagcctccacaaccttcacaa
ctttcccctgcttaccagatgggccccaaccagtctttttttaataacccgattccccac
cgaccacattctcctgcagtagatgctgtgatttcagaacatcatcccccacccatgttg
caagaagtcagtaaccctctgagacctattattgcacagcacaacccaatgctgccatct
cacttgaacaacttcattgaagagaatcccgcaggaatgcccataggggagacattagat
cgtatgcatggaaatgtagctttggaaacattgaggcagcagcagcaagcaagattacag
cagtggaatgagcataatgcctatctcagtcagggcaatcttccatatccgcaccatcac
caccctcacctacaacatcttccccagcagccaattggattgcaccaacagccagttagg
gcaaactggaaacttgcaagtaatacagaagacgaaacagaggctacatattcaaggttc
caggacttgctcagagaactgtcacaccgcgatcaaagtgaaagcagggacctagctgaa
atgccacctccccagtccagactgttgcaatacagacaagttcagcccagaagcccacca
gcgctcccctctccttcatgcaactcaaaccacagcggccactttcctaacttcactgaa
aacaacagagacattgaaatgtccaacaacccagcatttcagcagcatttgccccaaata
tacaatcccccattctcactgccatctgaacacataaccccacctcctttgaagtacctg
caacctgatggatcatggacctatgctaacctacagcagaatcacctaatggggcagggc
tttcattatggcatacctccattgccccatagatcacaacagaacccttttatacaaata
cagaatcatcagcatgcagtgggtcaggagccatttcatccgctcacatctcgagcagta
tctgcttcttcgctccacagcttagaagagtatgaaccaagaggaccaggcaggccgttg
taccaaagaagaatttcctctagttcagtccaggcttgttctgaagattttaacactcct
caagacaatcttggtcagtgtaaagagcttcaggaccatagtaaccagtcttctttcaac
tattcatcgcctgagttgtgggtaaactccacctcatctgccccatatcagaacattcca
tgcaacggatccaacagagcagtaccacccagagaactgttagctccaccgaagacagtc
aaacccccagaggatcacctgaaagctgaaaacatacagctgtccaattccttcaactac
aacatgcttcagcatctcggccagttcccaccccttatgcccaacaagcagatcgtcgaa
tcaaacagcaacagccagcagaatgctggcgggaacaagcctgccatgtcctacgcaagt
gctctgcgggctccgccaaagcccaaacctcctcctgagcaggcaaaaaagaatagtgac
cctttgtctttgtttcaggaacttagcctaggtagttcatcaggtagcaatggcttttac
tcctattttaaataa
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integrated database retrieval system
