Trachemys scripta elegans (red-eared slider): 117887292
Help
Entry
117887292 CDS
T07347
Symbol
TNRC6C
Name
(RefSeq) trinucleotide repeat-containing gene 6C protein isoform X1
KO
K18412
trinucleotide repeat-containing gene 6 protein
Organism
tst
Trachemys scripta elegans (red-eared slider)
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tst03019
]
117887292 (TNRC6C)
03036 Chromosome and associated proteins [BR:
tst03036
]
117887292 (TNRC6C)
Messenger RNA biogenesis [BR:
tst03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
117887292 (TNRC6C)
Chromosome and associated proteins [BR:
tst03036
]
Eukaryotic type
Gene silencing
piRNA pathway
117887292 (TNRC6C)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TNRC6-PABC_bdg
M_domain
Ago_hook
UBA_7
UBA
RRM_1
RRM_occluded
UBA_NBR1_C
DUF4718
Motif
Other DBs
NCBI-GeneID:
117887292
NCBI-ProteinID:
XP_034645619
LinkDB
All DBs
Position
14:17210780..17822225
Genome browser
AA seq
2054 aa
AA seq
DB search
MALCGKISTEVSVVLPGQDMDAACEFKTKDNQDLGEKEKQRINHPINSCQKTAFEGVKSR
EKEQEIQEEEHLMEEKKKKKQEEKKKKEGAQKKAAEQKTKVPEPIKTSLSQPQPAGTGTS
TSTSTITNSSNGKRASANGQQPAASRYLPREVPPRFRQQEQKQLLKRGQPLPTGTLTGAS
PPQGTGQAGASPPPQLGAGGQHHPSKTQTQTDLSHSSLGDHYENSHWGQQPTFRSEVNCS
WDKVIIDRTDKEAWPSITGTETESASECTTETDSASNCGSENSSMATGSAQGNFTGHTKK
TNGNNGTNGALIQSTSNQSALGAGGANGNGNSARVWGVATGSNSGLAHCSASGGDGKMDN
MIADGRSQNCWGASNSNAGINLNLNPNANPAAWPVLGHEGTVGAGNPSSICSPVSAIGQN
MGNQNGNPTGTLGAWGNLLPQESTEPQTSTSQNVSFSVQPQNLNTDGPNNTNPMNSSPNP
INAMQTNGLPNWGMAVGMGAIISPHLQGLPGANGTSVSQVSGGNGEGMGSSVWGISPGNP
ATGNSNSGFSQGNGDTVNSALSAKQNGSSSAVQKEGNGASAWDSGPPAGPGVLAWGRGSG
NSSVGSMHSGAWGHPNRNTSNGVNGEWGKPPNQHSNSDISGKGSAGWDSPSVTSQNPAMQ
QGNEQINSWAKAAASVTTASEESNDSGGGQNEGNTGREGAGEARRRDKGVIDQGQVQLPR
NDLDPRVLSNTGWGQTPVKQNTAWEFEESPRSERKNDNGTEAWGCTASQSSNSGGKNDGS
IMNSTNTSSVSGWVNSPPSSVPTNTGWGDNNNKAPNGPGGWGESASSTAVNAAAAATAAK
SGHAWSGTANQEDKSPTWGEPQKPKSQNWGDGQKSNPGWTSGGGDWTESSSVPGHLAEGK
KNGSGWDADNRSGSGWNDTTRSGTSGWGNGTNTKANTGTSWGESLKPSPQQNWASKPQDN
SVSNWGGAASVKQTGSGWVGGPVPPKQKDSSEATGWEEPSPPSIRRKMEIDDGTSAWGDP
NYNNNKTVNMWDRNNPVIQSSTTTNTTTTTTIINTNMVEPQPSHQSSAQPNRSPLLGPAG
WGEMPTVHAKTESSWGEPSSPSAAVDNGTSAWGKPPSSGTGWGDNSAESAGTYGRANAPA
AAPALCKPASKSMQEGWGSGGDEVNLSTSQWEDEEGDMWNNTASQESNSSCNSWGNAPKK
GLQKGMKTSSKQDEAWIMNRLIKQLTDMGFPREPAEEALKSNNMNLDQAMSALLEKKVEM
DKRGMGVTDYNGMVTKPLGCRPPSISKESSMDRPTFLDKDGGLVEEPTTSPFLPSPSLKL
PLSNSALPNQTLGGIASGLGMQNLNSSRQIPSGNLGMFGNSGAAQARTMQQPQQPPVQPL
NSSQPSLRAQVPQFLSPQVQAQLLQFAAKNIGLNPALLTSPINPQHMTMLNQLYQLQLAY
QRLQIQQQMLQAQRNVSGPMRQQEQQVARTINNMQQQIQQHQRQLAQALLMKQQPPPPHL
SLHPSAGKSAMDSFSPHPQAPGLPDLQTKEQQSSPNTFAPYPLAGLNPNMNVNSMDITGG
LSVKDTSQSQSRLPQWTHPNSMDNLSSAASSLDQNSSKHGAIPGGLSIGPPGKSSIDDSY
GRYDLIQNSDSPASPPVAVPHSWSRAKTDSDKISNGSSINWPPEFHPGVPWKGLQNIDPE
NDPDVTPGSVPTGPTINTTIQDVNRYLLKSGDSEYIEGTEGQLWLRIPSMPSGLEGSILH
GSIVQPQLLSRGFRLNGKRAWSSPTSSQNATLPSSSAWPLSASGYSSSFSSIASAPSIAG
KLSDIKSTWSSGPISHTQASLSHELWKVPRNTTAPTRPPPGLTNTKPSSTWGASPLGWTS
SYSSGSAWSTDSSGRTSSWLVLRNLTPQIDGSTLRTLCLQHGPLITFHLNLTQGNAVVRY
SSKEEAAKAQKSLHMCVLGNTTILAEFAGEEEVNRFLAQGQPLPPTSSWQSNTGTNQTRM
GSTSSSHGLVRNDAGHWNTPCLAGKGSSDLLWGGVPQYSSSLWGPPSTDDGRVIGSPTPL
NTLLPGDLLSGESI
NT seq
6165 nt
NT seq
+upstream
nt +downstream
nt
atggcgctgtgtggaaagatcagcaccgaagtgtctgtagtccttcccggtcaggacatg
gatgctgcttgtgaatttaaaaccaaagataatcaagatcttggagagaaagagaagcaa
agaataaatcatccaataaattcttgccagaaaaccgcctttgaaggagtcaagagcagg
gagaaagaacaagaaattcaagaagaggaacatttgatggaagaaaagaaaaagaaaaag
caggaagaaaagaaaaagaaggaaggtgctcagaaaaaggctgctgaacaaaaaaccaaa
gtgccagaacctattaagaccagtttaagccagccccagcctgccggtaccggtaccagt
acttccaccagcactattaccaacagcagcaatggcaagcgtgcatctgctaatggacag
cagccagctgcatcccgttacctgcctcgtgaggtgcctccacgcttccgccagcaagaa
cagaagcagctcttaaagagaggtcagccactgcctaccgggactctgactggcgcaagc
ccaccacaaggtacaggacaagcaggggcaagtcctcctccacagctaggagcaggtgga
cagcatcatcccagtaagacccaaacccaaacagatcttagtcacagtagtttgggagac
cattatgaaaattcccactggggacagcagcccactttcagaagtgaagtcaactgcagc
tgggataaagtgataatagacaggactgacaaggaagcgtggccttccattacaggaact
gagactgaatctgcttcagaatgtactacagaaactgactctgcctccaactgtggctca
gagaacagtagcatggctacagggagtgcccaaggcaacttcactggacatacaaagaaa
actaatggcaataatggcaccaatggagcactcatccaaagcacttctaaccagagtgcc
cttggagctggtggagcaaatggtaatggaaactcagccagagtgtggggtgtggccaca
ggctccaactctggcttagctcactgctctgccagtggtggggatggaaagatggacaac
atgattgcagatggtagaagtcaaaactgctggggtgcttccaactcaaatgctggcatt
aatcttaaccttaaccctaatgccaatccagctgcctggcctgtactcggacatgaagga
actgtgggagcaggcaacccttccagtatttgtagtccagtcagtgccataggtcagaat
atgggcaaccagaatggtaacccaacaggcaccttaggtgcttggggaaacttgctgccg
caagagagcacagaaccacaaacgtccacttctcagaatgtgtctttcagcgtacaacct
cagaaccttaacactgatggaccaaataacactaaccccatgaactcttcaccaaaccct
atcaatgcaatgcagactaatggactgccaaactgggggatggctgttggtatgggggcc
atcatctcgccccacctgcaaggccttcctggtgctaatggaacatcagtttctcaagtc
agtgggggcaatggtgaaggaatgggtagttcagtatggggaatatccccaggtaatcct
gccacaggaaacagcaattctgggttcagtcaggggaatggagacactgtgaactcagca
ttaagtgctaaacagaatggatccagcagtgctgtgcaaaaggaaggaaatggagcaagt
gcatgggattcaggacctcctgctggtcctggggtactagcatggggcaggggcagtggc
aacagtagcgttggtagcatgcattctggagcttggggccaccccaaccgtaacaccagt
aatggtgttaatggtgaatggggcaagcccccaaatcagcattccaatagtgacatcagt
ggtaaaggatcagcagggtgggatagccctagtgttaccagccagaatcctgccatgcag
cagggcaatgaacaaataaactcttgggccaaagctgcagcatctgtcaccacagctagt
gaagaaagtaatgacagtggtggaggtcaaaatgagggcaacactgggagagaaggagca
ggagaggccagaaggagagacaaaggggtgatagaccaagggcaagtccagttgccaagg
aatgaccttgacccaagagtcctgtccaataccggttggggacagactcctgtaaagcaa
aacactgcctgggaatttgaagaatccccaaggtctgaacgaaagaatgacaatggaacg
gaggcctggggttgtacagcttctcagtcttcaaactcaggggggaagaatgatgggtcc
atcatgaacagtacaaatacctcttcagtatctgggtgggtcaactctccaccctcatct
gttccaacaaatacaggttggggagacaacaacaacaaagcgccaaacggcccaggggga
tggggagaatcagctagctctactgctgtcaatgctgctgctgctgctactgctgccaaa
agtggccacgcttggagtgggaccgcaaatcaggaggacaaatcacctacatggggtgaa
cctcagaaacccaaatctcaaaattggggagatggacagaaatcaaatccaggctggact
tcaggaggtggagattggactgagtcatcatctgtacctggacacttggctgaggggaag
aagaatggatctggatgggatgctgacaatagatcagggtcaggttggaatgatactaca
aggtctgggaccagtggatggggaaatggcacaaacaccaaggctaatacaggtacaagt
tggggagaatctctaaaacctagccctcaacagaattgggctagtaaaccccaggacaac
agtgtgagcaactggggaggagcagcttctgttaaacagactgggtcaggatgggttggt
gggccagtgccacccaaacaaaaagatagcagtgaggcaactggctgggaagagccttct
ccaccatccattcgccgtaagatggaaattgatgatggtacctcagcttggggcgatcca
aactacaacaacaacaagactgtaaacatgtgggatagaaacaaccctgtaattcagagc
agtaccacaaccaacaccaccactactaccaccattatcaacacaaatatggttgaacct
cagccatcgcaccagtcaagtgcccagccgaaccggtccccgctgcttggtccagcaggc
tggggagaaatgcctactgtccacgcaaagactgaatcttcttggggagagccttcatcc
ccttctgctgcagttgataatggcacttcagcatgggggaaaccccccagcagtggtaca
gggtggggagataattctgccgagtcagcagggacctacggaagagcgaatgctccagct
gctgccccagcactgtgcaagccagcttctaaatctatgcaagaaggctggggcagtggt
ggggatgaagtgaacctcagtactagtcagtgggaagatgaagaaggagatatgtggaat
aatactgcttcacaagagagtaactcctcctgtaattcatgggggaatgccccaaagaaa
ggacttcaaaagggcatgaagacatctagtaagcaagatgaggcctggatcatgaaccgt
ctgataaaacagctcacagacatgggcttcccaagagagccagcagaagaggccttgaag
agcaacaatatgaatctcgatcaggccatgagtgctctgctggaaaagaaggtggaaatg
gacaagcgtggaatgggagtgaccgactataatggaatggtcaccaaaccccttggctgc
cgcccaccatcaatctccaaagagtcttccatggaccgccccaccttcctcgacaaggat
ggcggcctagtggaagagcccactacttcaccatttttgccttcaccaagcctgaagctc
cccctttcaaacagtgcactccctaatcagaccctgggcgggattgcctcagggctgggc
atgcaaaacttgaattcttctagacagataccgagtggcaatctgggtatgtttggcaat
agcggagcagcacaagccaggaccatgcaacagccgcagcaaccgccagtgcaacctctt
aactcatcccagcctagtcttcgtgctcaagtgcctcagtttctatcccctcaggttcaa
gcacagcttttgcagtttgcagcaaaaaacattggtctcaaccctgcactattaacctcg
ccaattaatcctcagcatatgacgatgttgaaccagctctatcagctgcagctggcgtac
caacgtttacaaatccagcagcagatgttacaggctcagcgtaatgtttccggacctatg
agacaacaggagcagcaagttgcacgtacaatcaataacatgcagcagcagatccagcag
caccagcgccagctggcccaggccctgcttatgaagcagcagcctccccctccacatcta
tctttgcacccctctgcaggcaaatcagccatggatagcttttcaccccatccccaggct
cccggcctacctgacctgcagaccaaagagcaacagtcttcaccgaacacctttgctcct
taccctcttgctggactgaatccgaacatgaatgtaaacagcatggacattactggtggt
ttgtcagtgaaggatacttctcagtctcagtctcgccttcctcagtggacacaccccaac
tcaatggataatctatctagtgctgcttcttcacttgaccagaattctagcaagcacggt
gctattcctggaggtctaagtattggtcctccaggaaagtcctccattgatgactcttat
ggacggtacgatctgatccaaaacagcgattcaccagccagtccacctgtagctgttcct
cacagctggtcacgtgccaaaactgatagtgataaaatctccaatggttccagtattaac
tggccaccagaatttcatcctggagtgccgtggaaaggactgcagaatattgaccctgag
aatgacccagatgtcactcctggaagtgttccgactgggcctaccattaataccaccata
caagatgttaatcgctatcttctcaagagtggagattctgaatacatagaaggaactgag
ggacagttatggctgaggatcccttccatgccttcaggtcttgaaggttcaattctgcat
ggaagcattgtgcaaccccagctgctttcgagagggttccgactcaatggcaagagagca
tggtcatccccaacatcatctcagaatgccacgctgccttcatcgagtgcctggccgctt
agtgcctccggctacagtagctctttcagcagcattgcatccgcacctagcattgcaggt
aaattgtcagacatcaagtctacgtggtcctctggcccaatctctcacacacaagcctct
ctatcccatgaactatggaaggtacccagaaacactactgctcctacgagaccacctcca
ggtttaacaaacaccaagccatcatctacctggggtgccagcccactgggttggaccagc
tcttattcctctggttctgcctggagtactgacagctcaggaagaacaagcagctggctg
gttctgcgtaacctcacaccccagattgatggttctacactgcggacactgtgtttgcaa
catggccctctaattacattccacctgaacctgactcaagggaatgctgtggtccgctac
agttccaaggaagaagcagccaaggcccagaagtctctgcatatgtgtgttttgggaaac
actaccatcttggctgagtttgctggtgaagaagaagtaaaccgtttcttagcacaaggc
cagccactgccacccacctccagttggcagtccaacactggaaccaatcagactcgcatg
ggctccacgagcagctctcatggattggtgcggaatgatgcaggccactggaatactccc
tgcctggctggcaaagggagcagcgatttgctctggggtggggtccctcagtactcaagc
agcctttgggggccccccagcaccgatgatggcagggttattggcagcccaacacctttg
aatactctgctcccaggtgatcttctcagtggggagtccatctag
DBGET
integrated database retrieval system
