Trachemys scripta elegans (red-eared slider): 117887324
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Entry
117887324 CDS
T07347
Symbol
COL8A1
Name
(RefSeq) collagen alpha-1(VIII) chain
KO
K23455
collagen type VIII alpha
Organism
tst
Trachemys scripta elegans (red-eared slider)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C1q
BclA_C
Motif
Other DBs
NCBI-GeneID:
117887324
NCBI-ProteinID:
XP_034645705
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Position
1:complement(151432988..151547832)
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AA seq
739 aa
AA seq
DB search
MAALLASVQLLAVAVTVYLELVRAIQGGIYYGIKQLPPQLPQYQALGQQVPHMPLGKEGI
PMQHMGKEVPHMQYGKEYPHLPQYMKEIPQLPMLGKEMVPKKDKEIPLASLRGEQGPPGE
PGPRGPPGTPGLPGHGVPGAKGKPGPQGYPGIGKPGMPGMPGKPGAMGLPGSRGEMGPKG
EIGPMGIPGPQGPLGPPGLPGIGKPGVQGLPGQQGVKGEPGMKGPPGLPGLQGPKGEKGI
GIPGLPGLKGPPGLPGPPGPVGLPGIGKPGMIGFPGPQGPIGKPGLPGEQGPQGLLGAPG
IQGPPGLPGVGKPGQDGIPGQPGFPGGKGEQGLPGLPGPPGLPGIGKPGFPGPKGDRGMG
GFPGALGPKGEKGHMGPPGMGGPPGEPGQPGLPGVMGPSGAVGFPGPKGEGGPVGPQGPI
GPKGEPGLQGFPGKPGFPGEVGPPGLRGLPGPMGPKGEAGHKGLPGLPGVPGQLGPKGEP
GIPGDQGHQGPSGIPGIAGPSGPIGPPGLPGPKGEPGVPGPPGFPGVGKPGVSGLQGPPG
KPGALGPPGQPGLQGPPGPPGPPGPPVIIPPTPPAIGQYLPEMGPGIDGVKTPPGYMGKK
GKHGGAVYEMPAFTAELTTPFPRVGVPVKFDKLLYNGRQNYNPLTGIFTCEIPGIYYFAY
HVHCKGASVWVALYKNNEPLMYTYDEYKKGFLDQASGSTVIQLMPGDKVYIQMPSEQAAG
LYAGQYVHSSFSGYLLYPM
NT seq
2220 nt
NT seq
+upstream
nt +downstream
nt
atggctgcgctgctagcctccgtgcagctgctggcagtggctgtaacagtttacctagag
ctagtgagagccattcaagggggcatctattatgggatcaagcagctgccaccccaactc
ccgcaatatcaggcccttggacaacaagtacctcacatgccactgggcaaagaaggcatt
ccaatgcagcacatgggcaaggaggtgccacacatgcaatatggaaaagaataccctcat
ctgcctcagtacatgaaagaaatcccccaactgcctatgctcggcaaggagatggtgcca
aaaaaagataaagaaattccattagccagtttgagaggtgagcaaggtccccctggtgag
cctggaccaagagggccaccagggaccccaggattaccaggtcatggagtgccaggagcc
aaaggaaaaccaggtccacaaggatatccaggaataggcaaaccaggtatgcctggaatg
cctggaaaaccaggagcaatggggctccctgggtcaagaggtgagatgggaccaaaggga
gagattggacctatgggaataccagggccacagggaccactagggcctcctggactgcct
ggaataggaaaaccaggtgttcaaggattaccaggacaacaaggagtaaagggtgaacca
ggaatgaaaggaccaccaggactcccagggcttcaagggcctaaaggagaaaaaggcatt
gggattccaggtttaccagggttaaaaggtccacctgggctacctggccctccaggtcca
gttggactcccagggataggcaaaccaggaatgattgggtttccaggaccacagggacct
ataggtaaaccaggacttccaggtgaacaagggccacaaggtcttcttggggcacctggg
attcaaggtccacctggccttccaggtgttggaaaaccaggtcaagatggaatcccaggc
cagcctggattcccaggtggaaagggggaacaaggcttgccgggtttaccagggccaccg
ggcctaccaggaattgggaaaccaggatttcctgggcctaaaggtgatcgtggcatgggt
ggtttccctggagcactggggcctaaaggtgagaaagggcacatgggtcctcctggcatg
ggtgggcctcccggggagccaggtcaaccaggattaccaggagtaatggggccatctggt
gctgttggtttcccaggaccaaaaggagaaggtggacctgtagggcctcaaggacctatt
ggtccaaaaggtgagcctggcctacaaggtttcccaggaaagccaggttttcctggggaa
gtaggacccccaggtcttagaggactacctggtccaatggggccaaagggagaagctggt
cacaaaggtttgccaggcctgcctggtgttcctgggcaattaggaccaaaaggggaacct
ggaatccctggtgatcaaggccatcaaggtccatctggaatcccaggtatcgcaggaccc
agtggcccaatcggaccacctggacttccaggacctaaaggagaaccaggtgtacctggt
ccaccaggctttccaggagtagggaaacctggtgtttcagggctgcaaggaccaccagga
aaacctggggcacttggtccacctggccagccgggtctccagggtcctccagggcctcca
ggtccacctggtcctccagtaataatcccacccaccccaccggccattggacaatatttg
ccagagatggggcctggcatcgatggagtgaagaccccacctggctatatgggcaagaaa
ggcaagcatggtggtgctgtctacgaaatgcctgcattcacagcagaactcaccacaccc
ttcccacgggtaggggtgcctgtgaaatttgacaagcttctctacaatggcaggcagaac
tataacccactgactggtatcttcacctgtgagatccctgggatttactactttgcctac
catgttcactgtaaaggggccagcgtctgggtagctttgtacaagaacaatgagccactg
atgtatacatacgatgaatataaaaagggtttcctggaccaagcttctggaagcaccgtc
attcagctgatgcctggagacaaagtttatattcagatgccatctgaacaggcagcggga
ctctatgctgggcaatatgttcactcatctttctcaggatatttattgtatcctatgtaa
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integrated database retrieval system
