Trachemys scripta elegans (red-eared slider): 117887374
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Entry
117887374 CDS
T07347
Symbol
DDX5
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117887374 (DDX5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tst03041
]
117887374 (DDX5)
03009 Ribosome biogenesis [BR:
tst03009
]
117887374 (DDX5)
Enzymes [BR:
tst01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117887374 (DDX5)
Spliceosome [BR:
tst03041
]
Complex A
U1 snRNP components
U1 related factors
117887374 (DDX5)
Complex B
117887374 (DDX5)
Ribosome biogenesis [BR:
tst03009
]
Eukaryotic type
Pre-60S particles
Helicases
117887374 (DDX5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
P68HR
ResIII
Helicase_C_2
Cas3-like_C_2
ERCC3_RAD25_C
BNIP2
Motif
Other DBs
NCBI-GeneID:
117887374
NCBI-ProteinID:
XP_034645819
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All DBs
Position
14:complement(26956401..26964442)
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AA seq
602 aa
AA seq
DB search
MPGYDMDRGFGGPRFGGSRGGPLSGKKFGNPGEKLTKKKWNLDELPKFEKNFYQEHPDVV
RRTVQEVEQYRASKEVTVKGHTCPKPLINFYEANFPANVMEVIQAQNFTEPTAIQAQGWP
VALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQV
AAEYSRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEAGKTNLRRCTYLV
LDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKEYVHINIGALE
LSANHNILQIVDVCHDVEKDDKLIRLMEEIMSEKENKTIVFVETKRRCDDLTRKMRRDGW
PAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYI
HRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAINPKLLQLIEDRGSGRSRGD
RRDRYSAGKRGGFGSFRERENFERTYGAVGKRDFGAKAQNGGYSAQTYSNGTPFGNGFAA
AGMQASFRAAGNPAGAYQNGYDQQYATNIATMHNGMNQQQYAYPATGAAPMIGYPMPAGY
TQ
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atgcctgggtacgacatggacagagggtttggtggtcctcgttttggaggaagcagaggt
ggacctctatctggaaagaaatttggaaaccctggagaaaaacttacaaaaaagaaatgg
aacctagatgaactgcccaaatttgagaagaatttttatcaagagcatcctgatgtagtt
agacgcactgtgcaagaggttgaacagtacagagcaagcaaagaagttacagtgaagggc
catacctgtccaaaaccacttataaatttctatgaagctaactttcctgcaaatgttatg
gaagtaattcaggcacagaatttcactgaaccaactgctattcaagcacaaggatggcct
gttgctttgagtggactggatatggttggagtagcacagactggatcaggaaaaaccctg
tcttacttgttgcctgccatagtgcatataaatcatcagccattcctagagcgaggagat
ggacctatttgtctggtgctggcaccaactcgagaactggctcaacaagtgcagcaagtg
gctgctgaatatagcagagcatgtcgtttgaagtctacttgtatttatggaggcgctcca
aagggaccacaaattcgtgatttagaaagaggtgtggaaatctgcattgcaacacctgga
agactcatagactttttagaagctggaaagaccaatctcaggagatgtacttaccttgta
cttgatgaagctgacagaatgcttgacatgggatttgagcctcagatcagaaaaatagta
gatcagataaggcctgacaggcaaactctaatgtggagtgcaacatggcccaaagaagtt
cgacaacttgctgaagatttcttgaaagaatatgtacacatcaacattggggcattggaa
ctaagtgcgaaccacaacattcttcaaattgtggatgtctgtcatgatgtagagaaggat
gacaaacttattcggttgatggaagaaattatgagtgagaaagaaaacaaaaccattgtg
ttcgtggaaaccaaaagacgatgtgatgatcttaccagaaaaatgagaagagatgggtgg
ccagcaatgggtatccacggtgacaaaagccagcaggagcgagactgggttctaaatgaa
ttcaaacatggaaaagctcctatcctgattgctacagatgttgcatccagaggtctagat
gtggaagatgtgaaatttgtcatcaattatgactaccctaactcctcagaggactatatc
caccgaattggacgaactgcccgcagtaccaaaacaggcacagcctacacattctttact
cctaacaatataaagcaagtaagcgacctcatctctgtgcttcgggaggctaatcaagct
atcaaccccaaattgcttcagttgattgaagacagaggttcaggtcgttcccgaggtgat
cgacgtgacagatattctgcgggcaaaaggggtggatttggtagttttagagagagagag
aattttgagagaacttacggtgcagtaggaaagagagactttggagcaaaagcccaaaac
ggtggctacagtgctcaaacctacagtaatggaactccatttggaaatggctttgcagct
gctggcatgcaggctagcttcagagctgctggtaatcctgcaggagcttaccagaatggt
tatgatcaacagtatgcaactaacattgcgactatgcacaatggtatgaaccaacagcag
tatgcatatcctgccactggtgctgctcctatgataggttacccaatgccagcaggttat
actcaataa
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integrated database retrieval system
