Trachemys scripta elegans (red-eared slider): 117887929
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Entry
117887929 CDS
T07347
Symbol
CLTCL1
Name
(RefSeq) clathrin heavy chain 2 isoform X1
KO
K04646
clathrin heavy chain
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst04142
Lysosome
tst04144
Endocytosis
tst05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
117887929 (CLTCL1)
04142 Lysosome
117887929 (CLTCL1)
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
117887929 (CLTCL1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tst04131
]
117887929 (CLTCL1)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
tst04147
]
117887929 (CLTCL1)
Membrane trafficking [BR:
tst04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
117887929 (CLTCL1)
Exosome [BR:
tst04147
]
Exosomal proteins
Proteins found in most exosomes
117887929 (CLTCL1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
Clathrin_propel
Clathrin_H_link
Clathrin-link
TPR_COPA_B
TPR_PEP5_VPS11
TPR_Vps41
Gp18_dom_I
capSnatchArena
Motif
Other DBs
NCBI-GeneID:
117887929
NCBI-ProteinID:
XP_034646624
LinkDB
All DBs
Position
15:18552635..18607822
Genome browser
AA seq
1685 aa
AA seq
DB search
MKSDTAGAKPGCQKADFEKLQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDM
SDPTTPIRRPISAESAIMNPASKVIALKDAGKTLQIFNIEMKSKMKAHTMAEEVIFWKWI
SVNTVALVTETAVFHWSMEGESQPQKMFDRHASLAGCQIINYRTDEHQKWLLLIGISAQQ
NRVVGAMQLYSVDRKVSQPIEGHAAAFAEFKIEGNSKPSTLFCFAVRSPAGGKLHIIEVG
QPATGNQPFVKKAVDVFFPPEAQTDFPVAMQIGTKHGVIYLITKYGYIHMYDLESGVCIY
MNRISADTIFVTAPHEPSSGIIGVNKKGQVLSVCVEEDNIVNYATNVLQNPDLGLRMAIR
SNLAGAEELFARKFNTLFAQGSYAEAAKVAASAPKGILRTSDTIRKFQSVPAQPGQASPL
LQYFGILLDQGQLNKFESLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKTADPTL
ALSVYLRANVPNKVIQCFAETGQFQKIVLYAKKVGYTPDWIFLLRSVMRVSPEQGLQFSQ
MLVQDEEPLANINQIVDVFMENSLIQQCTSFLLDALKNNRPAEGHLQTRLLEMNLIHAPQ
VADAILGNQMFTLYDRAHIAQLCEKAGLLQRALEHYTDLYDIKRAVVHTHLLNPEWLVNF
FGSLSVEDSVECLRAMLSANIRQNLQLCVQVASKYHEQLGTQSLVELFESFKSYEGLFYF
LGSIVNFSQDPDVHFKYIQAACKTGQIKEVERICRESNCYNPERVKNFLKEAKLTDQLPL
IIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRIPAVIGGLLDVDCSEDVIKNLIM
VVRGQFSTDELVAEVEKRNRLKLLLPWLESRIHEGCEEPATHNALAKIYIDSNNNPERFL
RENPYYDSCVVGKYCEKRDPHLACVAYERGQCDLELIKVCNENSLFKSEARYLVRRKDPE
LWANVLEENSPFRRQLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLD
NSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELYEEAFAIFRK
FDVNTSAIQVLIEHIGNLDRAYEFAERCNEPAVWSQLARAQLQKDLVKEAIDSYIKADDP
SAYMEVVQAASRNSNWEDLVKFLQMARKKARESYVETELIFALAKTNRLSELEEFVSGPN
NAHIQQVGDRCYEEGMYDAAKLLYNNVSNFARLASTLVHLGEYQAAVDSGRKANSTRTWK
EVCFACVDGKEFRLAQICGLHIVIHADELEELISYYQDRGYFEELIALLEAALGLERAHM
GMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWGELVFLYDKYEEYDNA
IITMMNHPTDAWKEGQFKDIIAKVANVELYYKALQFYLDYKPLLINDLLLVLSPRLDHTR
TVSFFSKVNQLPLVKPYLRSVQNHNNKGVNEALNNLLTEEEDYQGLRASIDAYDNFDNIT
LAQRLEKHELIEFRRIAAYLYKGNNRWKQSVELCKKDRLYKDAMQYAAESKDAELAEKLL
QWFLEEGKQECFAASLFACYDLLHPDVVLELAWRHNIMDFAMPYFIQVMREYLTKVDGLF
NKVDKLDASESLRKEEEQVAEPTPIVFGQQLMLTAGPSAVPPQANFQYGYTAPGFTQPPV
YGFNM
NT seq
5058 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagtgatactgcgggggcaaaacctggatgtcagaaagctgactttgaaaaactc
caaaacctgggaattaacccagcgaacattggattcagcaccctaacaatggaatctgat
aaattcatttgcatcagagagaaagtaggggaacaagcacaggtcgtgataattgatatg
agtgatccaactacacccatcagacgtccaatttctgcagaaagtgccatcatgaatcct
gcttctaaagtcattgctctgaaagatgcagggaagacacttcagatctttaacattgag
atgaaaagtaaaatgaaagcccatactatggcagaggaagtgatcttctggaagtggata
tcagtaaacacagttgccttggtgacagagacagcagtctttcattggagcatggaggga
gaatctcagccccaaaagatgtttgacaggcatgctagtcttgcaggctgccaaatcatc
aactacaggacagatgaacaccaaaaatggctactcctaataggaatttcagcccagcaa
aatcgtgtggttggtgcaatgcagttgtactcagttgataggaaggtttcccaacctata
gagggtcatgcagcagcctttgcagaattcaaaattgaaggaaactccaagccttccacg
ctcttctgttttgctgtacggagccctgcaggaggcaagctgcatataatagaagtaggt
caacctgctactggaaaccagccctttgtaaagaaagctgttgatgtgtttttccctcct
gaggctcagacagacttccctgtggcaatgcagattggaactaagcatggcgttatctac
ctgattacgaagtatggatacattcacatgtatgacttggaatctggagtgtgtatttac
atgaaccgtattagtgctgacacaatctttgtaactgctcctcatgaaccttcctctggc
attattggtgtgaataaaaaaggacaggtgctttcagtttgtgttgaagaagataacatt
gtgaactatgctactaacgttctccagaatccagacctgggtctgcgtatggctatccgc
agtaacctggctggggccgaggaactgtttgccagaaagttcaatacactctttgcacaa
ggaagctatgcagaagctgctaaagtggcagcatctgcaccaaagggaatcctgcgtacc
agtgatactatcaggaagttccagagtgtaccagcccagcccgggcaggcctctcccttg
ctgcagtactttggtatcttgcttgatcaaggacaacttaacaaatttgaatctttagaa
ctctgccgtcctgtcctgcaacaaggacgcaagcagctcctggagaaatggctgaaggaa
gataagctggagtgctctgaggaactaggagacctggtgaagaccgctgatccaaccctt
gcactcagtgtttaccttcgtgctaatgtgccaaacaaagtcattcagtgctttgcagaa
actggtcaattccagaaaatagtgctctatgccaaaaaggttggatatacgccagactgg
atcttcttgttgagaagcgtgatgagagtcagcccagaacagggactacagttctctcaa
atgttggtgcaggatgaggagcccctggctaatattaaccagatcgtagatgtattcatg
gagaacagtctcattcagcagtgcacttccttcttgttggatgctttgaagaataatcgc
cctgctgaaggacaccttcagacacgtctgttggaaatgaatctgattcatgcaccacag
gttgcagatgccatccttggaaaccagatgtttacactctatgatcgtgctcatattgcc
cagttatgtgaaaaggcaggcttgctacagagagcattggagcactacactgatctctat
gatataaagcgagctgtagttcacactcacctcttaaaccctgagtggcttgtaaacttc
tttggctctctgtcagttgaggactctgtggaatgtctgcgtgctatgctatcggccaac
atccgacaaaacctacagctgtgtgtgcaagtagcttctaaataccatgagcagcttggc
acccagtctcttgtggagctttttgaatcttttaaaagttatgaaggattgttttatttc
ctgggttctattgtgaacttcagccaggatccagatgtccacttcaaatatatccaggca
gcctgcaagacgggtcaaattaaggaggtagaaaggatctgccgtgaaagtaactgctat
aaccctgaacgagtgaagaattttctcaaggaggccaagctcacagaccagcttcctctg
atcattgtttgtgatagatttgactttgttcatgacctggttctctacttataccgcaac
aacctgcagaagtacatagagatctatgttcagaaggtgaatccaagtcgtataccagca
gtgattggagggcttcttgatgtggattgttctgaagatgttattaagaacttgatcatg
gtggttcgaggccagttctcaactgatgagctggtggctgaagtggaaaaaagaaatagg
cttaagttgctgctgccatggctggaatctagaattcatgaaggctgtgaagaacctgcc
acccacaatgctctggctaaaatctacattgacagtaacaataatcctgagcggtttctc
cgggagaacccatactatgacagctgtgttgtaggcaaatactgtgaaaaaagggaccct
catttggcctgtgttgcttatgagagggggcagtgtgaccttgaactcatcaaggtttgc
aatgagaactccttgttcaagagtgaggctcgctatttggtacgcagaaaggatccagaa
ctttgggcaaatgtccttgaggaaaacagtccattcaggcgacagctcattgatcaggtt
gtccagacagccttatctgaaacgcaggatcctgaagaggtttctgttactgtgaaagct
ttcatgactgctgatctgcccaatgaactaattgagcttcttgagaagatagtcttggac
aactctgtgttcagcgagcataggaacctgcagaatcttctgatcctgactgccattaaa
gctgaccgcactcgtgtaatggagtatatcaatcgtctggataactatgatgccccagat
attgccaacatagccatcagtaatgagctatatgaagaagcctttgctatcttcaggaaa
tttgatgttaatacttctgcaatacaggtgctgatagagcacattggcaacctggaccga
gcctatgaatttgcagagagatgtaatgaaccagctgtatggagccaactggctagagca
cagctccagaaggacttggtgaaggaagccattgactcctatatcaaggctgatgatccc
tctgcttacatggaagttgttcaagcagctagtagaaacagtaactgggaggatctggtt
aaattcttgcaaatggccagaaaaaaggccagagagtcctatgtagagacagaacttatc
tttgctttggcaaaaaccaaccgcctctcagagctggaagagtttgtgagtggccctaac
aatgcccacattcagcaggttggagatcgctgctatgaggagggaatgtatgatgcagca
aagctgctctacaacaatgtatctaacttcgcccgcctggcatctaccttggtgcatctt
ggagagtaccaggcagcagtagacagtggccgcaaagccaacagcaccaggacctggaag
gaggtgtgctttgcctgtgtggatggaaaggagttccgccttgcacagatatgcggcttg
cacatagtaatccatgcagatgaacttgaagagctgattagctattatcaggatcgtggc
tactttgaagaactaattgccctcttggaagctgctttgggcctggagcgtgctcacatg
ggcatgttcacagaactggctatcttgtactccaaattcaaacctcagaagatgagggaa
catctggagctcttctggtccagagtcaacattccaaaggtgctcagagctgcagaacaa
gctcacctctggggagaactggtcttcctttatgacaagtatgaagagtatgacaatgca
ataattacaatgatgaaccatcccactgatgcctggaaagaagggcagttcaaagacata
attgctaaggtggccaatgtggagctgtattacaaagccctgcagttttatttggactac
aaacctctgttgatcaatgatcttctgctggtattatctccacggctggatcataccagg
acagtcagctttttctcaaaggttaatcagctgcctctagttaagccttacctgcgttca
gtccagaaccacaacaacaaaggagtcaatgaggctctaaacaatctcctgacagaggag
gaggattaccagggcttgagagcatctattgatgcatatgataactttgataacatcaca
ctggctcagcgcttggagaaacatgaattgattgaatttaggcgtattgcagcctacttg
tacaaaggtaataatcgttggaaacagagtgtggagctctgcaagaaggatcgtctctac
aaggatgccatgcagtatgctgcggagtccaaagatgccgaactggcagagaaactgctc
cagtggttcctggaggaaggcaaacaggagtgttttgcagcatctctctttgcatgctat
gacttgctgcacccagatgtggtccttgagctggcatggaggcataacatcatggacttt
gcaatgccttatttcatccaggtgatgagggagtaccttaccaaagttgatgggctgttt
aataaggtggataaacttgatgcttctgaaagcctaaggaaagaagaggaacaagtagct
gaacccactccaatagtatttggccagcagctaatgttaacagcaggccccagtgcagta
cctccccaggccaacttccagtatggatacacagctccaggattcacccagccgcctgtt
tatggtttcaatatgtaa
DBGET
integrated database retrieval system
