Trachemys scripta elegans (red-eared slider): 117888050
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Entry
117888050 CDS
T07347
Symbol
DDX54
Name
(RefSeq) ATP-dependent RNA helicase DDX54 isoform X1
KO
K14808
ATP-dependent RNA helicase DDX54/DBP10 [EC:
5.6.2.7
]
Organism
tst
Trachemys scripta elegans (red-eared slider)
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
tst03009
]
117888050 (DDX54)
Enzymes [BR:
tst01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117888050 (DDX54)
Ribosome biogenesis [BR:
tst03009
]
Eukaryotic type
Pre-60S particles
Helicases
117888050 (DDX54)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DBP10CT
ResIII
DNA_pol3_chi
Motif
Other DBs
NCBI-GeneID:
117888050
NCBI-ProteinID:
XP_034646975
LinkDB
All DBs
Position
15:29522985..29547604
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AA seq
835 aa
AA seq
DB search
MAPRRRRPPRGREPEPRPGPTEGSPERPQASSKILPAFPTPDYSSDVEPDTREMVRAQNK
KKKKSGGFQSMGLSYPVFKGVMKKGYKVPTPIQRRTIPVILDGKDMVAMARTGSGKTACF
LIPMFEKLKAHSAQTGARALILSPTRELALQTMKFTKELGKFTGLKTALILGGERMEDQF
AALHENPDIIIGTPGRLMHVAVEMNLKLHSVEYVVFDEADRLFEMGFAEQLQEIIARLPE
SRQTLLFSATLPKLLVEFARAGLTEPVLIRLDVETKLSEQLKLAFFHVRADDKPAVLLHL
LRSVVRPQDQTVVFVATKHHAEYLKELLTAQGVNCTHIYSSLDQAARKINIAKFVHGQCA
VLIVTDVAARGIDIPMLDNVINYSFPAKPKLFLHRVGRVARAGRSGTAYSLVASDETPYV
FDLHLFLGRPLTLASPHEKPSAGDGVFGRVPQSVIDDEECLLFTDHESSLDLQSLRKVSE
NAHKQYLKSRPGPSPESVKRVKELDFSLLGIHPLFSSCFGEDELERLKFVDNIKTYRSKA
TIFEINATNKTLASDVMRAKRSRDRSLIDKYQRGQQERRAGAALGGQDPAVPAPEEEEAN
LQEVFSAVVGRKRKRHQVGEGLRKKQRHEAQRDEEFYIPYRPKDLESERGLSIGGEGSAF
EQQASGAMLDLLGDETHNMSKTKQLLKWDRKKKRFVGKTGQEDKKKICTESGRYISGSYK
NNLYEKWKKKYKVEEWDSEEEAGSEPRGGAHRRGRGGKQLAPAPGKHGSQQGRVHSELKN
KQQILKQRKRVAKQNFLQTGGLKRLKGKKRQRVQELRRMAFGRGAAKKGKMRKRM
NT seq
2508 nt
NT seq
+upstream
nt +downstream
nt
atggcgccgcgtcgccgccggccccctcggggccgcgagcccgagccccgcccggggcct
acggaggggagcccggagcggccgcaggcatccagtaagatcttacccgcctttccgacg
cctgattactcctctgacgtggagccagacactagagagatggtacgagcacagaacaaa
aagaagaagaaatctgggggcttccagtctatgggcttgagttatcctgtattcaaaggg
gtcatgaagaaaggctacaaagtgcctacgccaatccagcgaaggaccatccctgtgatc
ctggatgggaaagacatggtggccatggcaaggactggcagtgggaagacggcttgtttc
ctcatccccatgtttgagaagctgaaggcgcacagtgcccagacgggagcacgagccctc
atcctctcgccaacccgcgagcttgccttgcagactatgaaattcacaaaggagctgggc
aagttcacaggcctgaagactgcgttgattctgggaggagagaggatggaagaccagttt
gcagctctgcatgagaaccccgatataatcattggcaccccggggcgcctgatgcacgtg
gctgtggaaatgaacctgaaactgcacagtgtggagtacgtggtgtttgacgaagctgac
aggctctttgagatggggtttgcggagcagctgcaagagatcatcgcccggctccccgag
agccgccagaccctgcttttctctgccacgctccccaaactgctcgtggagtttgctcgg
gctggtctcactgagccagtcttgatccggttggacgtggagaccaagctcagtgagcag
ctcaagctggccttcttccatgtgcgcgcagatgacaagccggccgtgctgctgcacctg
ctgaggagcgtggtgaggccgcaggatcagaccgtcgtcttcgtggccaccaagcaccat
gcggagtacctcaaggagttgctgacagcgcagggcgtgaactgcacccatatctacagc
tccctggaccaggcagcccggaaaatcaacatcgccaagtttgtgcacggccagtgcgca
gtgctgattgttaccgacgtggctgcccgcggcattgatatccccatgctggacaatgtc
atcaactacagcttccctgccaagcccaagctgttcctgcaccgtgtcggccgcgtggcc
cgcgctggccgcagtggcaccgcctactccctggtggcatcggatgagaccccatatgtc
tttgacttgcacctgttcctggggcgcccgctcaccctcgccagcccccacgagaaaccc
tcagccggggatggggtgtttggcagagtcccccagagcgtcatcgacgacgaggagtgt
ctgctgttcactgaccacgagagctcgctggatctgcagagcctgcgcaaggtgtcggag
aacgcgcacaagcagtacctgaagtcccgtcctggcccctcgcccgagtctgtcaagagg
gtgaaggagctggacttctccctgctgggcatccacccgctcttcagttcttgctttggg
gaggatgagctggagagactgaagttcgtggacaacattaaaacctacagatccaaagca
accatctttgagatcaacgccaccaacaagaccctggccagcgatgtgatgcgagccaag
cggagccgcgaccgcagcctcattgacaagtaccagagggggcagcaggagagacgggct
ggggctgcgctggggggccaggacccagcagtccctgcccctgaggaggaggaagcaaac
ctccaggaagtgttctccgccgtggtgggcaggaagcggaagcggcaccaggtgggagag
ggcctcaggaagaaacagcggcatgaggcacagcgggatgaggagttctacattccctac
cggcccaaggacttggagagcgagcgggggctgagcattggcggggagggcagcgccttt
gagcagcaggcttctggcgccatgctcgacctcctgggagacgagacccacaacatgagc
aagaccaagcagctgctcaagtgggaccgcaagaagaagcggttcgtggggaaaactggc
caagaggacaagaagaaaatctgcacagagagtggcaggtacatcagcggctcctacaag
aacaacctctatgagaagtggaagaagaaatacaaagttgaggagtgggactccgaggag
gaggcggggagcgagccgagaggcggggcgcaccgcaggggcagaggaggcaagcagctg
gcgcccgcccctgggaaacacggctcccagcagggcagggtgcactcggagctgaagaac
aagcagcagatcttaaagcagaggaagcgggtggccaagcagaactttctgcagacgggc
ggcctgaagcggctgaaaggcaagaagcggcagcgggtgcaggagctgcgcaggatggcg
ttcggccggggtgctgccaagaaggggaaaatgaggaaaaggatgtaa
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