Trachemys scripta elegans (red-eared slider): 117888388
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Entry
117888388 CDS
T07347
Symbol
LRRC4B
Name
(RefSeq) leucine-rich repeat-containing protein 4B
KO
K16360
netrin-G3 ligand
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst04514
Cell adhesion molecule (CAM) interaction
tst04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
117888388 (LRRC4B)
04517 IgSF CAM signaling
117888388 (LRRC4B)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
tst04515
]
117888388 (LRRC4B)
Cell adhesion molecules [BR:
tst04515
]
Immunoglobulin superfamily
NGL family
117888388 (LRRC4B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
I-set
Ig_3
LRR_1
LRR_14
LRR_9
ig
V-set
Ig_2
LRRNT
LRR_At5g56370
LRR_EndoS
LRR_RPS2
DUF7617
Insulin_TMD
Motif
Other DBs
NCBI-GeneID:
117888388
NCBI-ProteinID:
XP_034647606
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Position
16:complement(6927765..6929816)
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AA seq
645 aa
AA seq
DB search
MAAPRCCSRRGPPPPRPSRMFWKPVLLLGFWLPSLAWAGASPTSCPAACSCSNQASRVIC
TRRELVEVPESISINTRYLNLQENNIQLIKTDTFKHLRHLEILQLSKNLIRKIEVGAFNG
LPNLNTLELFDNRLATVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGEL
KKLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDMIRPGSFQGL
TSLRKLWLMHAQVSTIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHNP
WHCNCDVLWLSWWLKETVPNNTTCCARCHAPANLKGRYIGELDQSHFTCYAPVIVEPPTD
LNVTEGMAAELKCRTGTSMTSVNWLTPNGTLMTHGSYRVRISVLHDGTLNFTNVTVQDTG
QYTCMVTNSAGNTTASATLNVSAVDPAATGYTYFTTVTVETLETAQEDALPTKKEPGPTP
AVGWDVTYSTTSLTPRSTRSTEKPYTVPITDAAEGGMKDLDDVMKTTKIIIGCFVAITFM
AAVMLIVFYKLRKQHQFHKHHGPTRTIEIINVEDELPAAAGAPGDSHLALPALEHDHLNH
YAAFKAHYNNNAGALACAKNPLLNSIHEPLLFKSSSKENVQETQI
NT seq
1938 nt
NT seq
+upstream
nt +downstream
nt
atggctgccccccgttgctgctcccggagggggccgccacctccccgtccctctaggatg
ttctggaagccggtcctgctgctggggttttggctgccctcgctggcgtgggccggagct
tcgcccacttcctgcccggccgcctgctcctgcagcaaccaggccagccgggtgatctgc
acgcgccgggagctggtggaggtgccggagagcatctccatcaacacgcggtacctcaac
ctgcaggagaacaacatccaactcatcaagaccgacaccttcaagcacctgcggcacctg
gagatcctgcagctgagcaagaacttgatccgcaagatcgaggtgggcgccttcaacggc
ctgcccaacctcaacacgctggagctcttcgacaaccgcctggccacggtgcccacccag
gccttcgagtacctctccaagctgcgggagctctggctgcggaacaaccccatcgagagc
atcccgtcctacgccttcaatcgggtgccctccctgcgccgcctggacctgggcgagctc
aagaagctggagtatatctccgaggcggccttcgaagggctggtgaacctgcggtacctg
aacctgggcatgtgcaacctcaaggacatccccaacctgacggcgctggtgcggctggag
gagctggagctgtcgggcaaccggctggacatgatccgccccggctccttccagggcctc
accagcttgcgcaagttgtggctgatgcacgcccaggtgtccaccatcgagcgcaacgcc
ttcgacgacctgaagtcgctggaggagctgaacctgtcccacaacaacctcatgtcgctg
ccccacgacctcttcacccccttgcaccggctggagcgggtgcacctcaaccacaacccc
tggcattgcaactgtgacgtcctctggctcagctggtggctgaaggagacggtgcccaac
aacaccacctgctgcgcccgctgccacgccccggccaacctcaaggggcgttacatcggc
gagctggaccagagccacttcacctgctacgcgccggtcatcgtggagccgcccaccgac
ctcaacgtgacggaggggatggcggcggagctgaagtgccggacgggcacctccatgacc
tcggtcaactggctgacgcccaacgggacgctgatgacgcacggctcgtaccgggtgcgg
atttccgtcttgcacgacggcacgctcaacttcaccaacgtgacggtgcaggacacgggg
cagtacacctgcatggtgaccaactcggccggcaacaccacggcgtcggccaccctcaac
gtctcggccgtggacccggccgccaccggctacacctacttcaccaccgtcaccgtggag
acgctggagacggcccaggaggacgcgctgcccaccaagaaggagccgggccccacgccc
gccgtgggctgggacgtgacctactccaccacctccttgacgccccgctccacccgctcc
acggagaagccctacaccgtgcccatcaccgacgcggccgagggcggcatgaaggacctg
gacgacgtgatgaagaccaccaagatcatcatcggctgcttcgtggccatcaccttcatg
gcggccgtcatgctgatcgtcttctacaagctgcgcaagcagcaccagtttcacaagcac
cacggccccacccgcaccatcgagatcatcaacgtggaggacgagctgccggccgcggcc
ggcgcccccggcgacagccacctggccctgccggccctggagcacgaccacctcaaccac
tacgcggccttcaaggcccactacaacaacaacgcgggggccctggcctgcgccaagaac
ccgctcctgaactctatccacgaacctctgcttttcaagagcagctcaaaggagaacgtg
caggagacgcagatctga
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integrated database retrieval system
