Trachemys scripta elegans (red-eared slider): 117888621
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Entry
117888621 CDS
T07347
Name
(RefSeq) neurogenic locus notch homolog protein 2-like isoform X1
KO
K20995
Notch 3
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst04330
Notch signaling pathway
tst04371
Apelin signaling pathway
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
117888621
04371 Apelin signaling pathway
117888621
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Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF
hEGF
EGF_CA
EGF_2
EGF_3
Ank_2
Ank
Notch
NODP
NOD
Ank_3
Ank_4
Ank_5
cEGF
DL-JAG_EGF-like
DUF4381
Motif
Other DBs
NCBI-GeneID:
117888621
NCBI-ProteinID:
XP_034648073
LinkDB
All DBs
Position
16:complement(28393552..28443417)
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AA seq
2416 aa
AA seq
DB search
MGSGAGSRVLLGGSLLGIALLAQLGAGAAVQCLEGSMPCENGGQCILYSNGKAACVCQPG
LIGERCQFQDPCHQSPCANGGVCESSLKDGTVQYQCTCPKGFRGQDCSLGDACANNPCAN
GARCTNWNSRYNCTCPPGYQGRNCRTDVDECRAPGVCRHGGTCFNTPGSFRCQCPAGFTG
QLCESIYTPCAPSQCLNGGTCRQTGELSYECACLPGFEGQNCEINIDDCPGHKCLNGGTC
VDGVNTYNCQCPPEWTGQFCTEDVDECQLQPNACHNGGTCFNTNGGHTCVCVNGWTGESC
SENIDDCATAVCFNGATCHDRVASFYCACPMGKTGLLCHLDDACVSNPCHEDAICDTNPV
NGRAICTCPPGFTGGACDQDVDECSIGANPCEHFGRCVNTQGSFQCQCGRGYTGPRCETD
INECLSMPCQNDATCLDRIGEFTCICMAGFSGTFCEINVDECDSNPCVNGGVCRDGVNGF
TCTCPSGFSGSMCQIDIDECASTPCQNGAKCVDRPNAYECRCTEGFEGMLCEKNIDDCSP
DPCHHGTCLDGIASFTCSCAAGYTGYRCENQLNECHSSPCQHGGKCIDRINKYQCNCLPG
TSGVNCEVNFDDCASNPCDYGVCRDGINRYDCICKPGFTGPLCNVEIDECASSPCQNGGT
CLDGENGFTCLCPEGFHDPHCYSEVDECSSSPCVHGACRDDINGYKCECEPGWAGTNCDL
NKNECESNPCQFGGTCTDYVNGYRCKCKEGFQGTYCQTNINDCLSSPCLNKGTCIDAIAS
YTCLCDLPYTGRNCENVLTPCSPNPCENGGVCDHTPDYEGFTCSCPPGWQGQRCHVDVNE
CDRTPCWNRGTCTNLHGGYSCACRPGYTGTNCETDIDDCAPNPCLNGGSCQDGISSFVCT
CLPGFTGPRCASETNECLSSPCRNGATCPDYVNSFTCTCAPGWAGLHCEHNVQECTDSSC
FNGGTCLDGLNSYTCRCRAGFTGTHCQHEIDECQSKPCLNGGICLDGVESYRCTCPQGYT
GAQCQTLVDWCRRSPCQNGGRCVQTGTALTCECPGGWTGRYCDIPNVSCEVVAAHRGVSK
EQVCHYRGQCVDAGNTHYCLCKEGYTGSYCESELNPCQPNPCQHGASCHSFIGSYDCECP
PGFEGKNCEYDIDECQSHPCQNGGSCIDLIGRYICSCPPGTLGVLCEINEDDCAASPGSR
APKCLNNGTCVDRVGGYRCNCPPGYTGERCEGDINECLAKPCLPQRTLDCVQGANDFHCL
CKPGYTGRRCQNIVNTCESQPCQNGGQCKMTVNTPLGYTCRCPPNYSGPNCERSVLSCRE
LACFNGGSCQHTALGARCSCLPGFTGPDCRLRANSSCTGASCLSGGTCIEMSWPPHFQCL
CPSGFSGLHCEQKLTLELQCLQEECAAKAGDSYCDKECNSPACKWDGGDCSLLVGDPWQQ
CEERQCWQLFNNSQCDEDCNTAACLYDNFDCKSRDRSCNPVYEKYCSDHFADGQCDQGCN
NEECGWDGLDCAREMPEHLASGVLVITVLLPPDELRRTSTTFLQKLSAILRTSLRFRLDR
DGNYMIEPFYRPSRLRRRELGREVIGSVVTLEIDNRLCVQASDKCFPDARSAADYLAALA
AVERLEFPYPIKAVHSDKLQPKPPDSMPLVPLVVVAAAVILLVILVLGVLVARRKREHST
LWFPEGFSLKKENSNKNRREPVGQDALGMKNISKGESLMGEHPDDWMDAECPEAKRLKVE
EPGGDSEDPVDCRQWTQHHLVAADIRMPPSMALTPPQGEFDTDCMDVNVRGPDGFTPLML
ASFCGGGVETDLAEEDEADDSSANIISDLICQGANLSAQTDRTGETALHLAARYARADAA
KRLLDAGADTNAQDNTGRTPLHAAVTADAQGVFQILIRNRSTDLDARMVDGSTALILAAR
LAVEGMVEELIACHADVNAVDELGKSALHWAAAVNNVEATIALLKNGANKDMQDSKEETP
LFLAAREGSYEAAKILLDHFANREITDHMDRLPRDIAQERMHHDIVRLLDEYNTVRSPQG
ALPPGHTMSPLMCPPNSFLPSLKPTPQGKKSRRPSAKNTAGAGNSASLAKEAKGRSKKLS
LECQGSLLESSVTLSPVDSLDSPYVANPTSPVLASPGVFHPASSSMSVGSTPMVHGLMDG
PFAVSLARLSDLGEVASAQSTILSMNRVSMPSLPRQPGCVGLSLGMVSPVAVPFDWHTRV
PTSQCNPVIGVVHPAASHPNLHQAAQPFPQGLLLPNHLAMVHSSQVLAAPSPAKEQPPPA
PTPGQPMPPPAPAAPALGRASQPISPKEGQGGARPGPPPPPQYYKAPGGQGAEDYPTPPS
QHSYTPGQDGTPKHYLHLRSEHPYLTPSPESPEQWASPSPHSLSDWSESTPSPAVLGPPQ
TLSHLPDQSTKMQVFA
NT seq
7251 nt
NT seq
+upstream
nt +downstream
nt
atgggctcgggggccgggtcccgggtgctgctgggcggcagcctcctgggcatcgcgctg
ctggcgcagctgggagccggagcagccgtgcagtgtctggaaggctccatgccctgtgag
aatggcggccagtgcatcctctactccaacgggaaggcagcctgcgtgtgccagcctggg
ctgattggcgagcgttgccagttccaggacccctgccaccagtcgccctgtgccaatggg
ggcgtgtgtgaaagctccctcaaggatggcaccgtgcagtaccagtgcacctgtcccaaa
ggcttccgaggtcaggactgctccctgggtgatgcctgcgccaacaacccctgcgccaac
ggggcccgttgcaccaactggaacagccgctacaactgcacctgcccgccaggctaccag
ggccgcaactgccgcacggacgtggacgagtgccgggcaccgggcgtctgccgccatggg
ggcacctgcttcaatacgccgggctccttccgctgccagtgcccggccggctttacggga
cagctgtgcgagagcatctacacaccctgtgcgccctcacagtgcctcaatgggggcacg
tgtcgccagaccggggagctgagctacgagtgtgcctgcctgccgggctttgaagggcaa
aactgtgagatcaacattgatgactgcccgggccacaaatgtctgaatggaggcacctgt
gtggacggggtcaacacctacaactgccagtgcccgcccgaatggacaggccagttctgc
acagaggacgtagatgagtgccagctgcagcccaatgcctgccacaatgggggcacctgc
ttcaacaccaacggtgggcacacctgcgtgtgcgtcaacggctggacgggcgagagctgc
agtgaaaacattgacgactgcgccacggccgtctgcttcaatggggccacctgccacgac
cgcgtggcctccttctactgcgcctgccccatgggcaagacaggtctcctgtgccacctg
gatgatgcctgcgtcagcaacccctgccatgaggatgccatctgcgacaccaaccctgtg
aacggccgggccatctgcacctgccccccaggcttcactgggggggcctgtgaccaggat
gtggatgagtgctctattggtgccaacccatgcgagcactttggccgctgtgtgaacacg
cagggctccttccagtgccagtgcgggcgcggctatacgggtccccgctgtgagactgac
atcaacgagtgcctgtccatgccctgccagaacgatgccacctgcctcgaccgcatcggg
gagttcacctgcatctgcatggcggggttcagcggcacattctgcgagatcaatgttgac
gagtgcgacagcaacccctgtgtcaatggcggggtctgccgggacggcgtcaatggcttc
acctgcacctgcccctctggtttctccggttccatgtgccaaatcgacattgatgagtgc
gccagcacgccctgccagaatggtgccaagtgcgtggaccggcccaacgcctatgagtgc
cgctgcactgagggttttgagggcatgctgtgcgagaagaacattgacgactgctcgccc
gacccctgccaccacggcacctgcctggacggcatcgccagcttcacctgctcctgtgcc
gccggctacaccggctaccgctgcgagaaccagctcaacgagtgccacagcagcccctgc
cagcacgggggcaagtgcatcgaccgcatcaacaagtaccagtgcaactgcctgccgggc
acctcaggcgtgaactgcgaggtgaactttgatgactgcgccagcaacccctgcgactac
ggcgtctgccgcgacggcatcaaccgctacgactgcatctgcaagcctggcttcacagga
cccctgtgcaacgtggagatcgacgagtgtgcgtccagcccctgccagaacggcggcacc
tgcctggacggcgagaacggcttcacctgcctctgccccgagggcttccacgacccccac
tgctactccgaggtggacgagtgcagcagcagcccctgcgtgcacggagcctgccgcgac
gacatcaacgggtacaaatgcgagtgtgagccgggctgggctggcaccaactgcgacctg
aacaagaatgagtgtgagtccaacccctgccagttcgggggcacctgtaccgactacgtc
aacggctaccgctgcaagtgcaaggagggcttccaggggacctactgccagacaaacatc
aacgactgcctctccagcccctgcctcaacaagggcacctgcattgacgccatcgccagc
tacacctgcctctgtgacctgccctacacaggccgcaactgcgagaacgtgctgacaccc
tgctcccctaacccctgtgagaatggaggggtctgcgaccacacgcccgactacgagggc
ttcacctgcagctgccccccaggctggcaaggtcagagatgccacgtggatgtgaacgag
tgtgaccggaccccctgctggaaccggggcacctgcaccaacctgcacggcgggtacagc
tgtgcctgccggccggggtacacaggcaccaactgcgagacagacattgacgactgcgcc
cccaacccctgcctgaatggtggctcttgccaggatggcatcagctccttcgtgtgcacc
tgcctgccgggcttcacgggcccgcgctgtgccagcgagaccaacgagtgtctgagcagc
ccctgccgcaacggcgccacctgccccgactacgtcaacagcttcacctgcacctgtgcc
ccaggctgggccggcctgcactgcgagcacaacgtgcaggagtgcaccgacagctcctgc
ttcaacggcggcacctgcctggacgggctgaactcctacacgtgccgctgccgcgccggc
ttcacgggcacccactgccagcatgagatcgatgagtgccagtccaagccctgcctcaat
gggggcatctgcctggacggtgtggagtcctaccgctgcacctgcccccagggctacacg
ggtgcccagtgccagaccctggtggactggtgcaggcgctcgccctgccagaacgggggc
cgctgtgtgcagacgggcacggccctgacctgtgagtgcccggggggctggaccggccgc
tactgtgacattcccaacgtttcctgcgaggtggtggcagctcatcgaggggtctccaag
gaacaggtgtgtcactaccggggccagtgcgtcgacgctggcaacacccactactgcctg
tgcaaggaaggctacacgggcagctactgtgagagcgagctcaacccctgccagcccaac
ccctgccagcacggtgcctcctgccacagcttcataggcagctacgactgtgagtgccca
ccggggttcgagggcaagaactgcgagtacgacatcgacgagtgccagtcccacccctgc
cagaatggaggctcctgcatcgacctcatcgggcgctacatctgctcctgcccaccggga
accctgggcgtcctgtgcgagatcaacgaggacgactgcgccgcgagccctggcagccgg
gcacccaagtgcctgaacaatgggacgtgcgtggaccgggtgggtggctaccgctgcaac
tgccccccgggctacacaggcgagcgctgcgagggcgacatcaacgagtgcctggccaag
ccctgcctgccccaacgcacgctggactgtgtgcagggcgccaacgacttccactgcctg
tgcaagccaggctacacgggccggcgctgccagaacatcgtgaacacatgcgagtcccag
ccctgccagaatggtggtcagtgcaagatgacggtgaacacgccgctgggctacacctgc
cgctgccccccgaactattccgggcccaactgtgagcgaagcgtgctgtcatgtcgggag
ctcgcctgcttcaacgggggcagctgccagcacacagcactgggtgcccgctgctcctgc
ctgccgggcttcactggccccgactgccgcctgcgggccaacagcagctgcaccggtgca
tcctgcctcagcgggggcacgtgcatagagatgtcctggcctccccacttccagtgcctc
tgccccagtggcttctccggcctgcactgcgagcagaagctcaccctggagctgcagtgc
ctgcaggaggagtgcgctgccaaggccggagattcctactgcgacaaggagtgcaacagc
cctgcctgcaaatgggacgggggcgactgctccctgctggtgggtgacccctggcagcag
tgtgaggagcgccagtgctggcagttgttcaacaacagccagtgcgacgaggactgcaac
acggccgcgtgcctctacgacaacttcgactgcaagagccgcgaccgcagctgcaacccc
gtgtatgagaagtactgctcggaccacttcgccgacgggcagtgcgaccagggctgcaac
aatgaggagtgtggctgggacgggctggactgcgcccgcgagatgccggagcacctggcc
agtggcgtgctggtcatcaccgtgctgctgccccccgacgagctgcgcaggaccagcacc
accttcctgcagaagctgagcgccatcctgcgcacctcgttgcgcttccgcctcgacagg
gacggcaactatatgattgagcccttctaccggcccagccgtctgcgccgtcgtgagctg
ggccgggaggtcattggctccgtggtcactctggagattgacaaccgcctctgcgtccag
gcctcagacaagtgcttccctgatgcgcgcagcgcggccgactacctggctgcactggcc
gctgtcgagcgcctggagttcccctaccccatcaaggctgtgcacagtgacaagctgcag
ccgaagcccccggactctatgcccctggtgcccctggtggtggtagcagcggccgtgatc
ctgctggtgatcctggtgctgggggtgctggtggcgcggcggaagcgggagcacagcacg
ctctggttcccagagggcttcagcctgaagaaggagaacagcaacaagaaccggcgggag
cctgtgggccaggacgccttgggcatgaagaacatcagcaaaggggaaagcctgatgggg
gaacacccagatgactggatggatgcagagtgcccggaggccaagagactcaaggtggag
gagccgggcggggactcagaggaccctgtggactgccgccagtggacacagcatcacctg
gtggcggccgacattcgcatgccgccatccatggccctgacaccaccccagggcgagttc
gacaccgactgcatggatgtcaatgtcagggggccagatggcttcactccgctcatgctg
gcctcgttctgcgggggtggtgtggagaccgatctggccgaggaggatgaggctgacgac
tcctcagccaacatcatctcggacctcatctgccagggcgccaacttgagcgcccagaca
gaccgcacgggtgagactgcgctgcacttggctgctcgctacgcccgggccgacgctgcc
aagcgcctgctggacgccggcgctgacaccaacgcccaggacaacacgggccgcacgcca
ctgcacgccgcggtgaccgccgacgcccagggcgtcttccagatcctgatccggaaccgc
tccacggacctggatgcccgcatggtggatggctccacggcactgatcctggctgcccgg
ctggccgtggaggggatggtggaggagctcattgcctgccatgcagatgtcaacgccgtg
gacgagctgggtaaatctgcactgcactgggctgcggctgtgaacaacgtggaggccacg
atcgcgctgctgaagaacggggccaacaaggacatgcaggacagcaaggaggagaccccg
ctgttcctggccgctcgggagggcagctacgaggcagccaagatcctgctggatcacttt
gccaaccgggagatcacagaccacatggaccggctgccgcgggacatagcccaggagcgg
atgcaccacgacattgtccgcctgctggacgagtacaacacggtgcgcagcccgcagggg
gcgctgccccctggccacaccatgtccccgcttatgtgcccacccaacagcttcctgccc
agcctcaagcccaccccgcagggcaagaagagccggcggcccagcgccaagaacacggca
ggggcaggcaacagcgccagcctggccaaggaggccaaggggcggagcaagaagctgagc
ttggagtgccagggctccctgctggagagctcagtcaccctgtcgcccgtcgactcgctg
gactctccctatgtggccaaccccacctcgcccgtcctggcctcgcccggcgtcttccac
ccagccagctcctccatgtcggtgggctccacgcccatggtgcatggcctgatggatggg
ccctttgccgtcagcctggcgcggctcagcgacctgggcgaggtggcatcggcccaaagc
accatcctctccatgaaccgggtctccatgccttcgctaccgcgccagcccggctgtgtg
gggctcagcctgggcatggtgagcccagtggcggtgcccttcgactggcacacccgtgtc
cccacctcccagtgcaacccagtcatcggggtggtgcatccggctgcctcccaccccaac
ctgcaccaagcggcccagcccttcccgcaggggctgctactgcccaaccacctggccatg
gtgcacagctcccaggtgctggccgcccccagccctgccaaggagcagcccccgccggcg
cccacccctgggcagcccatgcccccaccagcccctgcagcacccgccctgggccgcgcc
agccagcccatctcgcccaaggaggggcaggggggtgcgcgccccggccccccaccacct
ccccagtattacaaggcacccggcgggcagggggcagaagattaccccacacccccctca
cagcacagctacacccccggccaggacggcacccccaagcactacctgcacctgcgcagt
gagcacccctacctgacgccctcgcccgagtcccccgagcagtgggccagcccctcaccc
cactcgctgtccgactggtccgagtccacccccagcccggccgtgctggggcccccccag
accctctcccatctgcccgaccagtccaccaagatgcaggtgtttgcgtga
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