Trachemys scripta elegans (red-eared slider): 117888755
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Entry
117888755 CDS
T07347
Symbol
XAB2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117888755 (XAB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tst03019
]
117888755 (XAB2)
03041 Spliceosome [BR:
tst03041
]
117888755 (XAB2)
Messenger RNA biogenesis [BR:
tst03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
117888755 (XAB2)
Spliceosome [BR:
tst03041
]
Complex B
Other components
Prp19-related factors
117888755 (XAB2)
Complex C
117888755 (XAB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_2
TPR_12
TPR_8
TPR_19
TPR_15
ARM_TT21
ARM_TT21_C
TPR_16
RPN7
TPR_1
LTN1_E3_ligase_6th
NRDE-2
ATG1-like_MIT2
Motif
Other DBs
NCBI-GeneID:
117888755
NCBI-ProteinID:
XP_034648344
LinkDB
All DBs
Position
16:28291332..28307253
Genome browser
AA seq
857 aa
AA seq
DB search
MPELEETPVAAGEGKPDLFFEEEDLQYEEEILRNPFSVKCWIRYIEFKQNAPRHVLNLIY
ERALKELPGSYKLWYNYLKQRRKQVKNRCVTDPGHEEVNNCHERALVFMHKMPRIWLDYC
QFLMDQCRITRTRRTFDRALRALPITQHHRIWPLYLKFVRLYPLPETAVRVYRRYLKLSP
ENAEEYIEYLRSIDRLDEAALRLATVVNDERFVSKEGKSNYQLWHELCDLISQNPDKVKS
LNVGAIIRGGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIQTVMTVRDFTQVFD
SYAQFEESMIAAKMETTSELGQEEEDDVDLELRLARFEQLITRRPLLLNSVLLRQNPHNV
HEWHKRVKLYEGKPREIINTYTEAVQTVDPFKATGKTHTLWVSFAKFYEDNGQIEDARTI
FEKATKVNFKQVDDLACVWCEYGEMELRHENYDQALRILRKATAIPAKKAEYFDASEPVQ
NRVYKSLKVWSMLADLEESLGTFKSTKAVYDRILDLRIATPQIIINYALFLEEHTYFEES
FKAYERGISLFRWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPQKYAKTIYL
LYAKLEEEFGLARHAMAVYERATRAVQPSEQYEMYNIYIKRAAEIYGVTHTRSIYEKAIE
VLSDEHAREMCQRFADMECKLGEIDRARAIYSYCSQICDPRTTGSFWQTWKDFEIRHGNE
DTIREMLRIKRSVQATYNTQVNFMASQMLKVSSNATGTVSDLAPGQSGMDDMKLLEQRAE
QLAAEAERDKPRAKEKILFVRSDASRSELAALSRQANPDEIDIDEEDGGESEENEPDEVQ
LEQQSVPSAVFGGLKTD
NT seq
2574 nt
NT seq
+upstream
nt +downstream
nt
atgccggagctggaggagacgccggtggccgccggcgaggggaagccggacctcttcttc
gaggaggaggatctgcagtacgaggaagaaatcctgcgcaaccccttttctgtcaagtgc
tggatccgctacattgagttcaagcagaacgctccccggcatgtgctgaacctgatctac
gagagagccctcaaggagctgccaggcagttacaagctgtggtacaactaccttaagcag
cgccggaagcaggtgaagaacaggtgtgtgactgaccccggccatgaggaggtgaacaac
tgccatgaacgtgccctcgtcttcatgcacaagatgcctcggatctggctagattactgc
cagttcctcatggaccagtgccggatcacccgcacgcgcaggacctttgaccgggcgctc
cgggcgctgcccatcacacagcaccatcgcatctggcccctctacctgaagtttgtgcgc
ttgtaccccctgcccgagacggctgtgcgagtctaccgcaggtacctgaagctgagcccc
gagaacgccgaggagtacattgaatacctgcgctccattgaccggctggacgaggctgcc
ctccgccttgccaccgtggtcaatgacgagaggttcgtctcaaaggaggggaaatccaac
taccagctgtggcacgagctgtgtgacctcatctcccagaaccctgacaaggtgaagtcc
ctcaatgttggggccatcattcgcggaggcctgacccgcttcaccgaccagctgggcaag
ctttggtgctccctggccgactattacatccgcagcgggcactttgagaaggcccgggac
gtgtacgaggaggccatccagacggtgatgacggtgcgagatttcacccaggtgtttgac
agctatgcccagttcgaggagagcatgattgcagccaagatggagaccacctctgagctg
gggcaggaggaggaggatgatgtggacctggaactgcgcctggctcgctttgagcagctg
atcacacggcgccccctgctgctcaacagcgtgctgctgcgccagaacccccacaacgtc
cacgagtggcacaagcgcgtgaagctctacgagggcaaaccccgagagatcatcaacacc
tacacggaggccgtgcagaccgtggaccccttcaaggccaccggcaagacacacacactc
tgggtctccttcgccaagttctatgaggataatgggcagattgaggacgccaggaccata
tttgagaaagccaccaaggtgaacttcaagcaggtggacgacctggcctgcgtgtggtgc
gagtacggggagatggagctgcgccatgagaactatgaccaggccctgcgcatcctccgg
aaagccacggccatcccagccaagaaagcagagtacttcgatgcctcggagcccgtccag
aaccgtgtgtacaagtccctcaaggtctggtccatgctggccgacctggaagagagcctg
ggcaccttcaagtccaccaaagcggtgtacgaccgcatcctggacctgcgcatcgccacg
ccccagatcatcatcaactatgccctcttcctggaggagcacacctacttcgaggagagc
ttcaaggcctacgagaggggcatctccctgttccgctggcccaacgtgtacgacatttgg
aacacctacctgaccaagttcatcgaccgctatggcggcaagaagctggagcgtgcccgc
gacctcttcgagcaggcactggatggctgcccccagaaatatgccaagaccatctacctg
ttgtatgccaagctggaggaggagttcgggctggcgcggcatgccatggcggtgtatgag
cgggccacgcgggccgtgcagccctcggagcagtacgagatgtacaacatctacatcaag
cgggcggccgagatctacggggtcacccacacccgcagcatctatgagaaggccattgag
gtgctgtcagacgagcacgcccgcgagatgtgccagcgctttgctgacatggaatgcaag
ctgggtgagattgaccgggcccgggccatctactcctactgctcgcagatctgtgacccc
cggaccacaggctccttctggcagacgtggaaggactttgagatccggcacgggaacgaa
gacacgatccgggagatgctgcgcatcaaacgcagcgtccaggccacctacaacacccag
gtcaacttcatggcctcgcagatgctcaaagtctccagcaatgccacgggcaccgtgtca
gacctggcgccggggcagagtggcatggatgacatgaagctgctggagcagcgggcagag
cagctggcagccgaggcagagcgggacaaaccccgggccaaggagaagatcctctttgtc
aggagcgatgcgtcacgcagcgagctggccgcactctccaggcaagcgaaccctgacgag
atcgacattgacgaggaggacgggggtgagagcgaggagaatgagcctgatgaggtgcag
ctggagcagcagagtgtcccctcagctgtgttcggggggctgaagaccgactga
DBGET
integrated database retrieval system
