Trachemys scripta elegans (red-eared slider): 117888775
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Entry
117888775 CDS
T07347
Symbol
SMARCC2
Name
(RefSeq) SWI/SNF complex subunit SMARCC2 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
117888775 (SMARCC2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tst03021
]
117888775 (SMARCC2)
03036 Chromosome and associated proteins [BR:
tst03036
]
117888775 (SMARCC2)
Transcription machinery [BR:
tst03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
117888775 (SMARCC2)
Chromosome and associated proteins [BR:
tst03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
117888775 (SMARCC2)
PBAF complex
117888775 (SMARCC2)
GBAF(ncBAF) complex
117888775 (SMARCC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM
SWIRM-assoc_1
Myb_DNA-binding
Myb_DNA-bind_6
Chromo
CD99L2
Motif
Other DBs
NCBI-GeneID:
117888775
NCBI-ProteinID:
XP_034648372
LinkDB
All DBs
Position
16:complement(13466439..13488339)
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AA seq
1294 aa
AA seq
DB search
MAVRKKDGGPNVKYYEAADTVSQFDSARLWLGKNYKKYIQAEPPTNKSLSSLVVQLLQFQ
EEVFGKHVSNAPLTKLPIKCFLDFKAGGSLCHILAAAYKFKSDQGWRRFDFQNPSRMDRN
VEMFMTIEKSLVQNNCLARPNIFLHQEIEPKLLGKLKDIIKRHQGTVTEDRNNASHVVCP
VPSNLEEEEWVRPVMKRDKQVLLHWGYFPDSYDTWIPASEIEASVEDAPTPEKPRKVHAK
WILDTDTFNEWMNEEDYEVTDEKSPVSRRKKISAKTLTDEVNSPDSDRRDKKGGNYKKRK
RSPSPSPTPEAKKKNAKKGPSTPYTKSKRGHREEEQEDLTKDMDEPSPVPNVEEVTLPKT
VNTKKDSESAPVKGGTMTDLDEQEDESMETAGKDEEENSAGNKGEQAKNPDLHEDNVTEQ
THHIIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEY
LTSTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDAESRPTPMGPPPTSHFHVLADTPSG
LVPLQPKTPQGRQSDGDAKAGRKSKEIEDLVPEAVKAKPELTSASQQMLSFPDKGKEKPT
DLQNFGLRTDMYTKKNVPSKSKAAASATREWTEQETLLLLEALEMYKDDWNKVSEHVGSR
TQDECILHFLRLPIEDPYLEDSEASLGPLAYQPIPFSQSGNPVMSTVAFLASVVDPRVAS
AAAKSALEEFSKMKEEVPTALVEAHVRKVEEAAKVTGKADPAFGLESSGIAGTTSDEPER
IGEGGERGSFRALAREAPAISPPSDAAPGAASRKGNERRGEEPQETRPGLASGLELTLNR
LAQEESGADETRVDPQPAEEKKELKEPREGGAEEEAKEKLGEAPKKEEEKGKEGDSEKES
EKGDGDSMAEKEKEPKDGQEEVPKDLAEAEGERKTKVERDIGEGNLSTAAAAALAAAAVK
AKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREREALEYQRQQLLADRQ
AFHMEQLKYAEMRARQQHFQQMHQQQQQQPPPPLPPGSQPIPSSGAPLAPAAHSMPMAQA
PGAPTAASLVPQPSLAQTEQIGQAVPAAPGAPHTVPAQQGQTPAGPHAQPPFPGQQPSSQ
MLPGTVGVSSHPGVPGNLPAALPFGMPPSIPFSMASNVADSISINLPANTPAHPMHGNLP
CGMLAGGALAPPNLPVTVSSAMHPSMLTTNGPPLAAPALPPVSGLASAAAQSPAIVAAMQ
GSLLPNAALAPDQGPPLQTDPIAPSTATPVPPTQ
NT seq
3885 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcggaagaaggacggcggccccaacgtcaagtactacgaggccgcggacacc
gtcagccagttcgacagcgcgcggctctggctgggcaagaactacaagaagtacatccag
gcagagcctcccaccaacaagtccctttccagcctggtggtgcagctgctgcagttccag
gaggaggttttcggcaaacatgtcagcaacgccccgctcaccaagctgccgataaaatgc
ttcttggatttcaaagcaggaggatccctgtgccacatcctcgctgcagcctataaattc
aagagcgaccaaggatggcggcgtttcgatttccagaacccttcgcggatggatcgcaac
gtggagatgttcatgaccatcgagaaatccttggtgcagaacaactgcctggcccggcct
aacatctttctgcaccaggagatcgaacccaagctgctgggcaagctaaaggacattatc
aagcggcaccaggggacggtcaccgaggatcggaacaacgcctcccatgttgtctgcccg
gtccccagcaacctggaggaggaagaatgggttcgacctgtcatgaagagagacaagcag
gtccttctgcactggggctacttcccggacagctacgacacctggatccccgcgagtgaa
atcgaagcttctgtcgaggacgcgcccaccccggagaagccccggaaggtccacgccaag
tggatccttgacacggacaccttcaacgagtggatgaatgaggaagactacgaggtgacc
gatgagaagagccccgtctcccgcaggaagaaaatctccgccaaaacgctcactgacgaa
gtgaacagccccgactcggaccggcgcgacaagaagggtgggaactacaaaaagagaaag
cgctcaccctcgccgtccccgaccccagaagccaagaagaagaacgccaagaaaggcccg
tcgaccccgtacaccaagtccaagcgcgggcaccgcgaggaggaacaggaggacctgacg
aaggacatggacgagccctcccccgtccccaatgtggaggaggtcacgctgcccaaaaca
gtgaacaccaagaaggactcggagtctgcacccgtgaaggggggcaccatgaccgacctg
gacgagcaggaggatgagagcatggagactgccggcaaggatgaggaggaaaacagtgcg
gggaacaaaggggagcaggccaagaacccggacctgcacgaggacaatgtgacggagcag
actcaccatattatcatccccagctacgccgcctggttcgactacaacagcgtccacgct
atcgagcgcagagccctgcccgaattcttcaacggcaagaacaaatccaagacccccgaa
atatacctggcttatcgcaacttcatgatcgacacctaccggctgaacccccaggagtac
ctgacctccaccgcctgccgccggaacctggctggggacgtctgtgccatcatgcgggtc
cacgccttcctggagcagtgggggctgatcaactaccaggtggacgcagagagccggcca
acccccatgggacctccccctacatcgcatttccatgtcctggccgacaccccttcggga
ctggtgccgctgcagcccaagacgccccagggtcgccagagcgacggtgacgcaaaggcc
ggccgcaagagcaaagaaatcgaagatctagtcccggaggcggtgaaagcgaagcccgag
ctgacctcggcctcccaacagatgctcagcttccccgacaagggcaaggagaagccgacg
gacctgcagaacttcggcctgcgcacggacatgtacaccaaaaagaacgtcccttccaag
agcaaagccgccgccagcgccactcgggagtggacggagcaggagacgctgctgctgctg
gaggccctggagatgtacaaggacgactggaacaaggtgtcggagcacgtgggcagccgc
acgcaggacgagtgtatcctccacttcctgcgcctgcccatcgaggacccctacctggag
gactcggaggcgtcgctcgggcccctggcctaccagcccatccccttcagccagtcgggc
aaccccgtcatgagcaccgtggccttcctggcatccgtcgtggacccccgcgtggcctcc
gcggcggccaagtccgctctcgaggagttctccaagatgaaggaggaggtgcccacggcg
cttgtggaagctcacgtccgcaaggtggaggaggcggccaaagttacgggcaaggccgac
ccggccttcgggctggagagcagcgggatcgcggggaccacgtccgacgagccagagaga
ataggtgaggggggcgagcgaggctccttccgcgccttggcccgtgaggcgcccgccatc
tcgcctccgtcggacgctgctccgggcgcggcgagtaggaagggtaatgagcgaagaggg
gaggagccacaggagaccagacctggcctggcctccggtctggagctcaccctcaatcgg
ctggctcaggaggagagtggcgctgacgagacgcgggttgaccctcagccggcggaagag
aagaaggagctgaaggagccccgggaaggaggcgcggaggaggaagcgaaggagaagctg
ggcgaagcacccaagaaagaggaggagaaaggcaaagagggggacagcgagaaggagtcg
gagaagggtgacggtgacagcatggccgagaaggagaaggagccgaaggacggccaggag
gaggtgcccaaggacctggccgaggcagaaggtgagaggaagaccaaggtggagcgagac
attggtgaagggaacctttccaccgcggccgccgctgccctggctgctgctgccgtgaag
gccaagcacctggccgcagtggaggagcgcaagatcaagtccctggtggccctgctggtg
gagacccagatgaagaagctggagatcaagctgcgacactttgaggagctggagaccatc
atggaccgggagcgcgaggcactggagtaccagaggcagcagctcctggcagaccgacag
gccttccacatggagcagctcaaatacgccgagatgcgcgcccggcagcagcacttccag
cagatgcaccagcagcagcagcagcagccgcctccgcccctcccgcccggctcccagccc
atcccgtcctccggggctcccttagcgccagccgcccactccatgcccatggcccaggcc
ccaggggcaccgaccgcggccagcctggtgccccagcccagcctggctcaaacggaacag
atcggccaggcggtgccggccgcgccgggggctccgcacacagtaccagctcagcaggga
cagacccctgccggccctcatgcccagcctccgttccccggccagcagccttcctctcag
atgctccccgggacggttggagtgagctctcaccccggcgtgcccggtaatctcccggcg
gctctgcctttcggaatgcctccatccatcccatttagcatggctagtaatgtagcagac
tccatcagtattaacctccccgctaacacgcccgctcatccaatgcatggtaacctcccg
tgcggcatgctggccgggggcgccctggccccacctaacctgcccgtcaccgtgtctagc
gcgatgcaccctagcatgctgacgaccaacggaccgccgctcgccgcgcccgccttgcct
cctgtctcgggactggcctcggccgcggcccaaagcccggccattgtggcagccatgcag
ggcagtctccttccaaacgccgccctggcaccagaccagggcccccctctgcagacggac
cccatcgcacccagcacagccaccccggtcccgcccacgcagtga
DBGET
integrated database retrieval system
