Trachemys scripta elegans (red-eared slider): 117888808
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Entry
117888808 CDS
T07347
Symbol
SYMPK
Name
(RefSeq) symplekin isoform X1
KO
K06100
symplekin
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst03015
mRNA surveillance pathway
tst04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
117888808 (SYMPK)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
117888808 (SYMPK)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tst03021
]
117888808 (SYMPK)
03019 Messenger RNA biogenesis [BR:
tst03019
]
117888808 (SYMPK)
Transcription machinery [BR:
tst03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
117888808 (SYMPK)
Messenger RNA biogenesis [BR:
tst03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
117888808 (SYMPK)
U7-dependent histone pre-mRNA processing factors
117888808 (SYMPK)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
PDS5
Cnd1
Adaptin_N
Cohesin_HEAT
Motif
Other DBs
NCBI-GeneID:
117888808
NCBI-ProteinID:
XP_034648448
LinkDB
All DBs
Position
16:complement(5584535..5604656)
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AA seq
1285 aa
AA seq
DB search
MASRAGEGSNARMSIASQFFTQEEGSGTDSMTTSERVVDLLNQAALISNDSKINLLKQVQ
ELIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLLKLIANLNMLLK
DENVNVVKKAILAMTQLYKVALQWMVKSKVINDLQEACWEMVSAMASDIILLLDSDNDGI
RTHAIKFVEGLIITLSPRMPDSDVPKRHENDISLDRIPKDHPYIKHNVLWEEGKAALEQL
LKFMVHPAISSINLTAALGSLASIARQRPMFMAEVIQAYETLHANLPPTLAKSQVSSVRK
NLKLHLLSVLKHPSSFEFQAQITTLLVDLGTQQAEITRSMPSLKEPRKRPRDESDPALKK
MKMEPALGEDDEDKDLEQAAAPPPKPSAQTSTHSDTDITAEFLQPLLTPDNVANLVLISM
VYLPDTMPASFQATYTPVESAGTDAQIKHLARLMATQMTAAGLGPGSSPRPPGVEHTKLL
KEEPKEEKLVKPESVLIKRRLSSLSQGQAISVLGAQGCVTILLEQEAPQAKRRPEPIIPA
TQPRLAGAGGRKKVFRLSDAIKPLTDVQMEKLKLGAVKRILCSERAVACSGAAQARVKIL
SSLVTHFDMPLKSEVLAFILDDIRNRLDLAFAWLYQEYNAYLSAYPSGSLDSYDECLIGL
LSGLQEKPDQKDGIFTKVVLEAPLITESALEVIRKYCEDESRTYLGMSTLRDLIFKRPSR
QFQYLHVLLDLSSHEKDKVRQQAILFIKRMYEKDQLREYVEKFALNYLQLLVHPNPPSVL
FGADKDTEVAAPWTEETVKQCLYLYLALLPQNHKLIHELASVYTEAIADIKRTVLRVIEQ
PIRGMGMNSPELLLLVENCPKGAETLVTRCLHSLTDKVPPSPELVKRVRDLYHKRLPDVR
FLIPVLNGLEKKEVIQALPKLIKLNPIVVKEVFNRLLGTQHGEGNSAVSPLNPGELLIAL
HNIDSAKCDMKSIIKATNLCFGERNVYTSEVLAVVMQQLMEQSPLPMLLMRTVIQSLTMY
PRLGGFVMNVLSRLIMKQVWKYPKVWEGFIKCCQRTKPQSFQVILQLPPQQLSAVFEKCP
ELREPLLAHVRSFTPHQQAHVPNSTMTILEASSKQEVEVKDSQPLVEEELEPVPLLPRMS
QDMIALRLAQEKALKRQLEEEQKLKQPASQPRPAHALAPLPAEEPMDFREEGPEVETPTI
FISMQEEEEGSGGDGSLLDSSVEGPLPVKAAKSKEAGASSTADEGAESKPESLTPEELVP
GGPQPVSQPEELPEPGAEQEQKAES
NT seq
3858 nt
NT seq
+upstream
nt +downstream
nt
atggccagtcgcgcaggggagggcagcaacgcccgcatgagcatcgcctcccagttcttc
acccaggaggagggcagcggcacagacagcatgaccacctcggagagggtggtggatctg
ttaaaccaagctgccctgatcagcaacgactctaaaatcaacctcctcaaacaggtccag
gagctaattataaacaaggaccccacgctgctggataacttcctggatgagatcatcgcc
ttccaggcagacaaatccatcgaggtgcggaagtttgtcatcggcttcatagaagaggcc
tgcaaacgggacatcgagctgctgctgaagctcatcgccaacctgaacatgctgctgaag
gacgagaatgtcaacgtggtgaagaaggccatcctcgccatgacccagctctacaaggtg
gcgctgcagtggatggtgaagtccaaggtcatcaacgacctgcaggaggcctgctgggag
atggtgtcggccatggccagcgacatcatcctactgctggactcggacaacgacggcatc
cgcacccacgccatcaagttcgtggaggggctaatcatcacgctgtcgccccgcatgccc
gactcggacgtgcccaagcgccacgagaacgacatcagcctcgaccgcatccccaaggac
cacccctacatcaaacacaatgtgctgtgggaggagggcaaggcagccctggagcagctg
ctgaagttcatggtgcacccggccatctccagcatcaacctcacagcagcgctgggctcc
ctggcctccatcgcccgccagcggcccatgttcatggccgaggtgatccaggcctacgag
accctgcacgccaacctgccgccgacactggctaagtcccaggtgagcagcgtccgcaag
aacctgaagctgcacctgctgagcgtgctgaagcacccctcgtccttcgagttccaggcg
cagatcaccaccctgctggtggacctgggcacccagcaggccgagatcacccgcagcatg
cccagcctgaaggagccgcgcaagcgcccgcgggacgagagcgacccggccctgaagaag
atgaagatggagccagctctcggggaggatgacgaggataaggacctggagcaagcggcc
gcgccaccgcccaagccctctgcccagaccagcacccattcggacacggacatcacggcc
gagttcctgcagcccctgctgacgccggacaacgtggccaatctggtgctgatcagcatg
gtgtacctgcccgacaccatgcccgcctccttccaagccacctacacccccgtggagtca
gctggcacagacgcccagatcaagcatctcgcccgcctgatggccacccagatgacggcc
gcagggcttgggccaggctcctctccccgtcccccaggcgtggagcacaccaagctgctg
aaggaggagccgaaggaggagaagctggtgaagcccgagagcgtgctgatcaaacggcgc
ctgtcctcgctatcccagggccaggccatctccgtgctgggggcacagggctgcgtcact
atcctcctggagcaagaggccccccaagccaagcggcgtccggagcccatcatcccggcc
acccagcccaggctggcaggcgccggcgggcgcaagaaggtttttcgcctgagtgacgcg
atcaagccgctgacggacgtgcagatggagaagctgaagctgggagctgtgaagcggatc
ctgtgctcagagagagccgtcgcctgcagcggggcggcccaggcccgtgtcaagatcctc
tcgtccctggtgacccacttcgacatgcccctgaagagcgaggtcttggccttcatcctg
gacgacatccgcaaccggctggacctggccttcgcctggctgtaccaggagtacaacgcc
tacctgagcgcatacccgtccggctccctggacagctacgacgagtgcctcatcggcctg
ctctccggcctgcaggagaagccagaccagaaggatgggatcttcaccaaggtggtgctg
gaagccccactcatcacagagagcgccctggaggtgatccgcaagtactgcgaggatgag
agccgcacctacctggggatgtccaccctccgggacctgatcttcaagcgcccgtccagg
cagttccagtatctgcacgtgctgctggacctcagctcccatgagaaggacaaggtccgc
cagcaggcgatcctcttcatcaagcgtatgtatgagaaggaccagctgcgggagtacgtg
gagaagtttgcgctgaactacctacagcttctggtgcaccccaaccccccgtctgtgctc
ttcggtgccgacaaggacacagaggtggctgctccctggaccgaggagacggtgaagcag
tgtctgtacctgtacctggccctgctgccgcagaaccacaagctgatccacgagctggcg
tcggtctacacggaggccatcgctgacatcaagcgcaccgtgctgcgggtcatcgagcag
ccgatccgtgggatggggatgaactccccggagctgctgctgctggtggagaactgcccc
aaaggggctgagaccctggtgactcggtgcctgcacagcctgacggataaagtgcccccg
tctcccgagctggtgaagcgagttcgcgatctctaccacaagcgactcccggacgtccgg
ttcctcatccccgtcctcaacggcctggagaagaaagaggtgatccaggctctgcccaag
ctcatcaagttgaaccccatcgtggtgaaggaggtgttcaaccgcctcttggggacgcag
catggcgaagggaattcggccgtgtcccccctgaaccctggggagctgctcatcgccctg
cacaacatcgactccgctaagtgcgacatgaaatccataatcaaagccaccaacctgtgt
ttcggggagaggaacgtctacacgtcggaggtgctggccgtggtgatgcagcagctgatg
gagcagagccccctgcccatgctgctcatgaggacggtcatccagtcgctgaccatgtac
ccacgcctgggcggcttcgtcatgaacgtcctgtcccgcctcatcatgaaacaggtttgg
aagtaccctaaagtgtgggagggcttcatcaaatgctgccagcgcaccaagccccagtcc
ttccaggtcatcctgcagctccctccgcagcagctcagcgccgtcttcgagaagtgcccc
gagctgcgggagcccctgctggcccacgtccgctccttcaccccgcaccagcaagcgcac
gtccccaactccaccatgaccatcctggaagccagcagcaagcaggaggtggaggtgaaa
gactcccagccgctggtggaggaggagctggaaccggtgcccctcctcccacgcatgtcc
caagacatgatcgctctgcggctggcccaggagaaggcgctcaaacgccagctggaggag
gagcagaaactgaagcagccggccagccagccgcgccctgcccacgccctggcaccgctg
cccgccgaggagcccatggacttccgggaggagggtcccgaggtggaaacgcccaccatc
ttcatcagcatgcaggaggaagaggaggggtcaggcggagacggatccctgttggactcc
agcgtggaggggcccctacctgtgaaggcagcgaagagcaaggaggcgggagccagcagc
accgctgacgagggagccgagagcaagccagagagcctcacgccggaggagctggtgccc
ggcggcccccagcccgtcagccagccggaggagctgccagagcctggggcggagcaggag
cagaaagcagagagctga
DBGET
integrated database retrieval system
