Trachemys scripta elegans (red-eared slider): 117888814
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Entry
117888814 CDS
T07347
Symbol
SMARCD1
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
117888814 (SMARCD1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tst03021
]
117888814 (SMARCD1)
03036 Chromosome and associated proteins [BR:
tst03036
]
117888814 (SMARCD1)
Transcription machinery [BR:
tst03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
117888814 (SMARCD1)
Chromosome and associated proteins [BR:
tst03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
117888814 (SMARCD1)
PBAF complex
117888814 (SMARCD1)
GBAF(ncBAF) complex
117888814 (SMARCD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
DivIC
Motif
Other DBs
NCBI-GeneID:
117888814
NCBI-ProteinID:
XP_034648459
LinkDB
All DBs
Position
16:11500889..11512570
Genome browser
AA seq
508 aa
AA seq
DB search
MAARAGFQSVTPSGGGGGAGALGPGPPGPPVRMGPAPGQGLYRSPLPGAAYPRPGMLPGS
RMTPQGPSMGPPGYGGSPSVRPGMAQSGMDQSRKRPAPQQIQQVQQQAVQNRNHNAKKKK
MADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKRKLRIFIS
NTFNPAKSDAEDGEGTVASWELRVEGRLLEDAALSKYDATKQKRKFSSFFKSLVIELDKD
LYGPDNHLVEWHRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQPPQFKLDPRLARLLGI
HTQTRPVIIQALWQYIKTHKLQDPHEREYVICDKYLQQIFESQRMKFSEIPQRLHALLMP
PEPIIINHVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIAALDNKIHET
IETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMTDVVGNPEEERRAEFYFQPWA
QEAVCRYFYSKVQQRRQELEQALGIRNT
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgcgggcgggtttccagtcggtgactccgagcggcggcggcgggggagccgga
gcactggggccgggccccccggggccccccgtccgcatgggcccggctcccggccaaggc
ctctaccgctcccccctgccgggcgccgcctacccgcgccctggtatgttgccaggcagc
cgcatgacacctcagggaccctccatgggtcccccaggatatggtgggagtccctcagtc
cggcctggaatggcccagtctggtatggatcagtcccgcaagaggccagctcctcagcaa
atccagcaggtccagcagcaagcggtccagaatcgtaatcacaatgctaagaaaaagaaa
atggctgacaaaattctacctcagaggattcgtgaactggtaccagagtctcaggcctac
atggatctgttggcatttgaaaggaaactggaccagacaatcatgaggaaacgtctggat
atccaggaggccttgaaacgacccattaagcaaaagcgaaagctgcgcatttttatctcc
aacaccttcaatccagccaagtcggacgcggaagatggcgaagggactgttgcctcgtgg
gagctccgggtggaagggcggctgctcgaggacgctgctctgtccaaatatgatgccacc
aaacagaaaaggaaattctcatccttcttcaagtctctggtgatcgagctggacaaggac
ctgtatggcccagacaatcacctggtggagtggcacagaactgctactacccaggagaca
gatggcttccaggtgaagaggcctggggacgtgaatgtgcgctgtactgtcctcctgatg
ctggactatcagccaccacagttcaaactggacccccgcctggctcgtctcttggggatt
catacccagacccgcccagtgatcatccaggcactgtggcagtacatcaagacccacaag
ctacaggatccccatgagcgggagtatgtcatctgcgacaagtatctccagcagatattt
gagtctcagcggatgaagttctctgagattcctcaaaggctgcatgctttgctcatgccc
ccagaaccaatcatcattaaccatgtgatcagtgttgacccaaacgaccagaaaaaaacc
gcctgctatgacatcgatgtggaagtggatgatactcttaaaactcagatgaattctttc
ttgctgtccacagccagccagcaggaaatcgctgccctggataacaagatccatgagaca
atagaaaccattaatcagctgaagacacaacgcgagttcatgctgagttttgcccgtgac
ccccaaggcttcatcaatgactggctccagtcacagtgccgagatctaaagaccatgact
gatgttgttgggaatccagaagaggaacgtagagctgaattctacttccagccctgggct
caggaagccgtgtgcagatacttctactccaaggtgcagcagagacggcaggagctggag
caggcactgggaatccgcaacacataa
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integrated database retrieval system
